FInal Exam Flashcards

1
Q

Streptococcus pyogenes (start of prelim 2)

A

Gram +, aerobic, cocci (circle shaped), chain forming, Strep throat

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2
Q

Virulence factor

A

characteristic or structure that contributes to the ability of a microbe to cause disease

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3
Q

Streptolysin

A

a hemolytic (red blood cell killing) enzyme, produced by streptococci

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4
Q

Exotoxin

A

a toxin released by a living bacterial cell into its surroundings.

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5
Q

Adhesin

A

general term for any microbial factor that promotes attachment

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6
Q

Innate Immunity

A

Immunity that is present before exposure and effective from birth. First line of defense, non specific. -Anatomical barriers (skin, hair, etc) - Inflammation -Complementation (antibodies)

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7
Q

Pathogen Associated Molecular Patterns (PAMPs)

A

The molecules recognized by pattern recognition receptors.

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8
Q

Toll like receptors

A

each recognize a specific “danger” molecule AND are embedded in cellular membranes.

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9
Q

Antigen

A

A protein that, when introduced in the blood, triggers the production of an antibody

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10
Q

Antibody

A

A protein that acts against a specific pathogen

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11
Q

Opsonization

A

coating antigen with antibody enhances phagocytosis

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12
Q

Proteolysis

A

the breakdown of proteins or peptides into amino acids by the action of enzymes

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13
Q

Cell-mediated Immunity

A

function of immune system mediated by cells

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14
Q

Humoral Immunity

A

the process of adaptive immunity manifested by the production of antibodies by B lymphocytes. made in bone marrow.

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15
Q

Adaptive Immunity

A

the ability to recognize and remember specific antigens and mount an attack on them

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16
Q

M protein

A

resists phagocytosis

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17
Q

Conjunctivitis

A

inflammation of the conjunctiva

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18
Q

Staphylococcus aureus

A

pink eye, not always pathogenic, gram positive, fac anaerobe, found on skin turns pathogenic when it goes in body

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19
Q

Coagulase

A

A bacterial enzyme that causes blood plasma to clot

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20
Q

Protein A

A

allows staph aureus to evade immune system

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21
Q

Apocrine glands

A

Sweat glands in the pubic and underarm areas that secrete thicker sweat, that produce odor when come in contact with bacteria on the skin

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22
Q

Cornyebacterium

A

body odor bacteria

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23
Q

Volatile organic compounds

A

Organic chemicals that evaporate readily and exist as gases in the air (smell)

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24
Q

Staphlyococcus epidermis

A

bacteria that result in smelly feet

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25
Q

Thioalcohols

A

smelly sulfur compounds

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26
Q

Endoflagella

A

flagella that spiral tightly around a cell instead of protruding

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27
Q

Treponema pallidum

A

causes syphilis

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28
Q

Spirochaete

A

an effective evader of the human immune system

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29
Q

Snuffles

A

Upper respiratory disease of rabbits

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30
Q

Chlamydia trachomatis

A

Chlamydia

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31
Q

Elemental body

A

is a tough, non-reproductive “spore-like” form, it forces host cell to engulf it, then within its own membrane-bound compartment it transforms to reticulate body

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32
Q

Reticulate body

A

takes over the host cell, assimilates nutrients and replicates

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33
Q

Obligate parasite

A

unable to grow outside of a living host

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34
Q

Reverse transcriptase

A

An enzyme encoded by some certain viruses (retroviruses) that uses RNA as a template for DNA synthesis.

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35
Q

Baltimore classification

A

a classification scheme that groups viruses into seven classes according to how the mRNA is produced during the replicative cycle of the virus

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36
Q

Papillomavirus

A

virus that causes warts and is associated with cancer

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37
Q

Herpes Simplex virus

A

a virus that normally causes cold sores near the lips but that can also cause brain damage

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38
Q

Basal cells

A

stem cells

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39
Q

Receptor mediated endocytosis

A

enables a cell to acquire bulk quantities of specific substances through absorbtion

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40
Q

Oncovirus

A

a virus that can cause cancer

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41
Q

Glycolipid envelope

A

Glycoproteins involved in cell reception

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42
Q

Varicella zoster virus

A

chicken pox and shingles

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43
Q

Shingles

A

viral disease that affects the peripheral nerves and causes blisters on the skin that follow the course of the affected nerves

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44
Q

Epstein-Barr virus

A

Herpes Virus

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45
Q

Human immunodeficiency virus

A

HIV, a virus that attacks the immune system, retrovirus

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46
Q

Retrovirus

A

An RNA virus that reproduces by transcribing its RNA into DNA and then inserting the DNA into a cellular chromosome; an important class of cancer-causing viruses.

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47
Q

Kaposi’s sarcoma

A

a disease in which cancer cells are found in the skin or mucous membranes that line the gastrointestinal (GI) tract, from mouth to anus, including the stomach and intestines

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48
Q

Integrase

A

the enzyme responsible for integrating viral DNA into the host cell’s DNA

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49
Q

CD4+ T lymphocytes

A

have surface receptors to which HIV can attach to promote entry into the cell

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50
Q

Gene therapy

A

The insertion of working copies of a gene into the cells of a person with a genetic disorder in an attempt to correct the disorder

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51
Q

Endogenous retrovirus

A

Integrated retroviruses derived from infection of the germline (egg or sperm) of an ancestral organism. All vertebrates are thought to carry numerous endogenous retroviruses.

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52
Q

Mpox

A

smallpox like virus

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53
Q

Smallpox

A

A highly contagious viral disease characterized by fever, weakness, and skin eruption with pustules that form scabs; responsible for killing Native Americans.

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54
Q

Antigenic drift

A

a mechanism for variation in viruses that involves the accumulation of mutations within the genes that code for antibody-binding sites.

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55
Q

Antigenic shift

A

changes in antigens that occur when viruses exchange genetic material with other strains

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56
Q

Hemagglutinin

A

One of the enzymes found on the surface of the Influenza virus. It is responsible for binding the virus to the cell that is being infected.

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57
Q

Neuraminidase

A

One of the enzymes found on the surface of the Influenza virus. It promotes the release of progeny viruses from infected cells.

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58
Q

Influenza virus

A

flu

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59
Q

SARS-CoV-2

A

COVID-19, ssRNA virus, enveloped virus, respiratory disease

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60
Q

MERS-CoV

A

Middle East Respiratory Syndrome Coronavirus, respiratory disease

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61
Q

COVID Variants

A
  • variant of covid that have mutated
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62
Q

T cells

A

Cells created in the thymus that produce substances that attack infected cells in the body.

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63
Q

B cells

A

produce antibodies

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64
Q

Immune memory

A

immune system remembers invaders it has destroyed before and kills them quickly the second time

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65
Q

Primary immune response

A

the primary is the first time the body has encountered the antigen, and it works with B and T cells to kill it off, and create memory T cells

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66
Q

Live attenuated vaccines

A

Live pathogen, but weakened. May cause minor illness in rare cases.

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67
Q

Inactivated vaccines

A

dead organisms injected into patient to build immunity

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68
Q

Subunit vaccines

A

use antigenic fragments to stimulate an immune response

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69
Q

Viral vector vaccines

A

use a modified version of a different virus as a vector to deliver protection

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70
Q

RNA vaccines

A

introducing RNA that encodes antigens

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71
Q

Sterilizing immunity

A

person who encounters the pathogen does not have a detectable infection

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72
Q

Measles

A

virus

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73
Q

Herd immunity

A

The resistance of a group to an attack by a disease to which a large proportion of the members of the group are immune

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74
Q

Antifreeze

A

a liquid added to the water in a cooling system to lower its freezing point

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75
Q

Conjugation

A

In bacteria, the direct transfer of DNA between two cells that are temporarily joined.

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76
Q

Transformation

A

(genetics) modification of a cell or bacterium by the uptake and incorporation of exogenous DNA

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77
Q

Transduction

A

the process by which DNA is transferred from one bacterium to another by a virus

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78
Q

Agrobacterium tumefaciens

A

a tumor-inducing bacteria in plants that has been altered by scientists to transfer traits (genes) from one plant to another.

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79
Q

Bacillus thuringiensus

A

lives in dirt

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80
Q

Glyphosate

A

a broad-spectrum herbicide; it is the active ingredient in Roundup

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81
Q

Genome editing

A

an experimental method of detecting and correcting defective genes in an individual

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82
Q

CRISPR/Cas9

A

a revolutionary gene editing technique derived from the immune system of simple prokaryotes

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83
Q

Pasteurization

A

treating a substance with heat to kill or slow the growth of pathogens

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84
Q

Psychrophile

A

bacteria that prefer cold, thriving at temperatures between 0 C and 25 C.

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85
Q

Mesophile

A

bacteria that prefers moderate temperature and develops best at temperatures between 25 C and 40 C

86
Q

Thermophile

A

an organism that has adapted to living in very high temperatures (heat), such as bacteria or algae

87
Q

Halophile

A

salt loving, bacteria that survive in highly concentrated areas

88
Q

Acidophile

A

an organism that grows best at low pH; typically below pH 6

89
Q

Lactate fermentation

A

anaerobic sugar breakdown pathway that produces ATP and lactate

90
Q

Alcoholic fermentation

A

the anaerobic process by which yeasts and other microorganisms break down sugars to form carbon dioxide and ethanol

91
Q

Lactobacillus

A

Can derive lactic acid from glucose which creates an acidic environment

92
Q

Streptococcus thermophilus

A

used to make yogurt

93
Q

Prebiotic

A

substance that stimulates bacterial growth in the large intestines

94
Q

Probiotic

A

live bacteria that when consumed live temporarily in the colon and confer health benefits on the host

95
Q

Precision fermentation

A

uses microbial hosts as “cell factories” for producing specific functional ingredients

96
Q

Plasmid

A

small, circular piece of DNA located in the cytoplasm of many bacteria

97
Q

Cloning

A

A process in which a cell, cell product, or organism is copied from an original source.

98
Q

Cell-based (cultivated) meat

A

produced using animal cell culture technology, where meat is produced from animal cells using a combination of biotechnology, tissue engineering, molecular biology and synthetic processes

99
Q

Alcohol fermentation

A

conversion of sugar into alcohol (ethanol) under anaerobic (no/low oxygen)conditions

100
Q

Malic acid

A

organic acid found in apples

101
Q

Saccharomyces cerevisiae

A
  • baker’s yeast/wine yeast, -Evolved to quickly produced ethanol, which kills competing microorganisms -Ability to convert sugar into ethanol even in aerobic (oxygenated) conditions
102
Q

O. oeni

A

malic acid (harsh) is converted in lactic acid (mellow) to help soften a wine and add complexity by this lactic acid bacteria

103
Q

Sporadic disease

A

Disease that occurs occasionally and at random intervals in a population.

104
Q

Endemic disease

A

disease constantly present in a population

105
Q

Epidemic

A

a widespread occurrence of an infectious disease in a community at a particular time.

106
Q

Pandemic

A

Disease that occurs over a wide geographic area and affects a very high proportion of the population.

107
Q

Morbidity

A

illness/sickness rate

108
Q

Mortality

A

death rate

109
Q

Fecal - oral transmission

A

-Water contaminated with intestinal pathogens -Often there is a ‘point source’ where fecalmaterial enters water supply

110
Q

Salmonella enterica serotype typhi

A

Causes typhoid fever. Grows in the intestinal tract of infected humans; transmitted in feces/fecal - oral transmission

111
Q

Pathogenicity island

A

A type of genomic island, a stretch of DNA that contains virulence factors and may have been transferred from another genome.

112
Q

John Snow

A

Father of Epidemiology, studied the London Cholera epidemics of 1848 & 1854, suspected it was from the water, as most cases were found close to the Broad Street pump

113
Q

Vibrio cholerae

A

causes cholera (Fecal-oral transmission)

114
Q

TCP

A

encode pili that help V. cholerae to attach to host cells in the gut

115
Q

Cholera toxin

A

Vibrio cholerae exotoxin

116
Q

CFTR

A

cystic fibrosis transmembrane conductance regulator

117
Q

Giardia

A

-parasite that can affect the small intestine -occurs from ingestion of Giardia cysts

118
Q

Cysts

A

dormant larvae surrounded by protective coverings

119
Q

Norovirus

A

a contagious gastrointestinal illness

120
Q

Pathogenic E. coli O157:H7

A

-The 157 “O antigen” of the LPS of E. coli, The 7 “H antigen” refers to the E. coli flagellum

121
Q

Intimin

A

A pathogenic E. coli adhesion protein that binds tightly to an E. coli-produced receptor injected into host cells.

122
Q

EHEC

A

Enterohemorrhagic E. coli, produces Shiga Toxin

123
Q

Shiga toxin

A

Shigella, damages kidneys

124
Q

Hemolytic Uremic syndrome

A

EHEC infection

125
Q

Listeria monocytogenes

A

Listeriosis occurs when L.monocytogenes contaminates food and the food is ingested

126
Q

Controlled actin polymerization

A

Able to pass through strong barriers in the body: including blood-brain barrier and placental barrier

127
Q

Flavivirus

A

Hepatitis C

128
Q

Hepatitis C virus

A
  • Single-stranded RNA virus that is positive sense - virus causes chronic inflammation of the liver and cirrhosis
129
Q

Arbovirus

A

arthropod borne virus (hep c, yellow fever, zika, etc)

130
Q

Mumps

A
  • virus (-)ssRNA - virus found in saliva andrespiratory secretions - causes swelling of glands
131
Q

Parotid glands

A

large glands at the angle of the jaw which produce saliva

132
Q

Attenuated vaccine

A

vaccine composed of a weakened form of the pathogen that is generally unable to cause disease

133
Q

Mycobacterium tuberculosis

A

causes tuberculosis

134
Q

Mycolic acid

A

-long-chained, branched fatty acids (layer found in some cells) -helps TB to avoid host immune response, also to be less sensitive to antibiotics

135
Q

Latent infection

A

live bacteria in the lungs but notgrowing, no symptoms, not contagious

136
Q

Granuloma

A
  • a general term used to describe a small, knot-like swelling of granulation tissue in the epidermis - some can contain latent TB
137
Q

Legionella

A
  • bacteria that causes Legionnaire’s Disease - evolved to multiply inside of amoeba and survive in water sources
138
Q

Amoeba

A

single-celled eukaryotic protist that live in water sources and generally feed on bacteria

139
Q

Macrophage

A
  • Large white blood cell that removes bacteria, foreign particles, and dead cells - can help clear infection or serve as a host to grow M. tuberculosis
140
Q

Zoonotic disease

A

disease that can be passed between animals and humans

141
Q

Negri bodies

A

rabies

142
Q

Dengue Fever Virus

A
  • the most common arboviral disease, caused by mosquitos - bleeding, respiratory distress, dramatic drop in blood pressure
143
Q

West Nile Virus

A

-Transmitted through the bite of an infected mosquito Mild signs and symptoms: fever, headache and body ache, nausea and vomiting, skin rash soreness to neck from swollen lymph gland - no vaccine

144
Q

Antibody dependent enhancement

A

causes secondary infections of Dengue fever to be often more serious because the antigen replicates inside the macrophage.

145
Q

Dead end host

A

A host from which infectious agents are not transmitted to other susceptible hosts

146
Q

Malaria

A

A disease caused by mosquitoes implanting parasites in the blood.

147
Q

Borrelia

A
  • Lyme disease - transmits to humans by Ixodes tick bite, humans appear to be an “accidental host”
148
Q

Penicillin

A

a beta-lactam (inhibits cell wall synthesis)

149
Q

Streptomycin

A

targets the ribosome (where proteins are made)

150
Q

Persister

A

Bacterial cells may escape the effects of antibiotics without undergoing genetic change

151
Q

High throughput screening

A

a method for trying to find an effective antibiotic from a library of millions of different molecules

152
Q

Efflux pump

A

membrane transporter in Gram-negative bacteria helps the bacteria pump out antibiotics

153
Q

Rhizobia

A

soil bacteria that fix nitrogen after becoming established inside root nodules of legumes

154
Q

Buchnera aphidicola

A

Buchnera (bacteria) feeds the aphide ssential amino acids which itcan’t make for itself

155
Q

Symbiont

A

The smaller participant in a symbiotic relationship, living in or on the host.

156
Q

Rumen

A

stomach chamber in cows and related animals in which symbiotic bacteria digest cellulose

157
Q

prokaryote (start of prelim 1)

A

A unicellular organism that lacks a nucleus and membrane bound organelles

158
Q

Eukaryote

A

A cell that contains a nucleus and membrane bound organelles

159
Q

Chlorophyll

A

Green pigment in plants that absorbs light energy used to carry out photosynthesis

160
Q

Spores

A

single-celled reproductive bodies highly resistant to cold and heat damage; capable of new organisms

161
Q

Mycotoxin

A

a toxin produced by a fungus

162
Q

Fruiting body

A

The reproductive structure of a fungus that contains many hyphae and produces spores

163
Q

Mycelium

A

The part of the fungus responsible for extracellular digestion and absorption of the digested food.

164
Q

Candida

A

A genus of yeasts and is the most common cause of fungal infections worldwide

165
Q

Ringworm

A

A highly contagious, fungal infection of the skin or scalp.

166
Q

Microbiome

A

all of the microorganisms that live in a particular environment, such as a human body

167
Q

Streptococcus

A

Berry - shapped bacterium found in twisted chains.

168
Q

Heliobacter

A

stomach ulcers (stomach was thought to be sterile until these bacteria were found)

169
Q

Volatile fatty acids

A

can be absorbed into the bloodstream, andused as carbon and energy sources by thehost

170
Q

Bifidobacterium

A
  • an Actinobacterium that has metabolism similar to LAB - It is considered a desirable probiotic organism
171
Q

Clostridium

A
  • inside honey - can colonize an immature GI tract
172
Q

Myxococcus

A
  • predatory bacteria - hunt in cooperative “wolf packs” - work together to build spore producing “fruiting bodies”
173
Q

Coliform

A

a type of bacteria found in human and animal wastes (💩 bacteria)

174
Q

Escherichia coli

A
  • a common fecal coliform - G neg, rods
175
Q

Fecal transplant

A

transfer of stool from a healthy donor into the gastrointestinal tract of a recipient (Zack Kozma lol)

176
Q

Serratia marcescens

A

Rod shaped bacterium related to the bacterium that causes pneumonia, makes red pigment

177
Q

Quorum sensing

A

Intraspecies communication used for (biofilm formation, make virulence factors, make products that allow them to work together for motility)

178
Q

Biofilm

A

A microbial community that usually forms as a slimy layer on a surface.

179
Q

Extracellular polymeric substance (EPS)

A

a glycocalyx that permits bacteria to attach to various surfaces (slimy part of biofilm)

180
Q

Aliivibrio fischeri

A
  • bioluminescent bacterium that colonizes the light organ of hawaiian squid - use quorum sensing to light up with high density
181
Q

Autoinducer

A

a small signal molecule that takes part in quorum sensing

182
Q

Catabolic reaction

A

Complex molecules are broken down to simpler ones and energy is released.

183
Q

Anabolic reaction

A

any chemical reaction that combines simple molecules to build more-complex molecules

184
Q

Anaerobe

A

any organism that is able to live without oxygen

185
Q

Gingivitis

A
  • inflammation of gums - Caused by the gram negative bacterium Porphyromonas endodontalis
186
Q

Reduction

A

gain of electrons

187
Q

Oxidation

A

loss of electrons

188
Q

Adenosine triphosphate

A

ATP (free energy)

189
Q

Respiration

A

when oxygen is used as an electron acceptor - aerobic and anaerobic

190
Q

Fermentation

A

when organic compounds are used as an electron acceptor -anaerobic only

191
Q

Amino acid

A

Building blocks of protein

192
Q

Polysaccharide

A

Carbohydrates that are made up of more than two monosaccharides (sugar)

193
Q

Nucleic acid

A

DNA and RNA

194
Q

Fatty acids

A

Building Blocks of Lipids

195
Q

Central Dogma

A

DNA needs to be transcribed into RNA before being made into proteins

196
Q

Symbiosis

A

A relationship in which two different organisms live in close association with each other

197
Q

Endosymbiosis

A

symbiosis in which one of the symbiotic organisms lives inside the other (mitochondria predecessor and eukaryote, chloroplast predecessor and plants)

198
Q

Mutualism

A

A relationship between two species in which both species benefit

199
Q

Commensalism

A

one organism benefits and the other is unaffected

200
Q

Parasitism

A

A relationship between two organisms of different species where one benefits and the other is harmed

201
Q

Guinea Worm Disease

A
  • caused by the parasite Dracunculus medinensis - obligate (needs host to survive)
202
Q

Brain Eating Amoeba

A
  • Naegleria fowleri, (parasitic amoeba/eukaryotic protist) - facultative (does not need host to survive)
203
Q

Archaea

A

Domain of unicellular prokaryotes that have cell walls that do not contain peptidoglycan

204
Q

Propionibacterium acnes

A

Abbreviated P. acnes; technical term for acne bacteria, anaerobic environment

205
Q

LUCA

A

Last Universal Common Ancestor. The shared ancestor that multiple organisms diverged from

206
Q

Heterotroph

A

organism that obtains energy from the foods it consumes

207
Q

Autotroph

A

An organism that makes its own food

208
Q

Malassezia

A

Naturally occurring fungus that is present on all human skin, but is responsible for dandruff when it grows out of control.

209
Q

Virus

A

A tiny, nonliving particle that invades and then reproduces inside a living cell.

210
Q

Enterococcus faecalis

A

gram positive cocci, fecal bateria

211
Q

Mycobacterium

A

a large family of bacteria that is often found in soil and water (survive in chlorine)