Final Flashcards
Location of PI(4)P
Golgi
Location of PI(4,5)P2
Plasma membrane
Location of PI(3)P
Endosomes
What do Phosphoinosotides do?
They can recruit selected signaling proteins to different regions of the cell and can serve a scaffolding function. They can also serve as identity tags for different regions of the membrane.
IP3 function
Binds to IP3 receptors on sarcoplasmic reticulum and allows for calcium release.
DAG function
Activates protein kinase C which is a serine and threonine kinase with different downstream effects than PKA due to different specificities.
Lithium
Inhibits inositol 1-phosphatase and downregulates the synthesis of PIs that are involved in second messenger signaling. It is nonspecific.
Pleckstrin homologous domains
Domains found in a variety of proteins that bind to phosphotidyl inositides (PIs). There are a lot of different conformations and types of pleckstrin homologous domains so they recognize different PIs. This is the way that proteins can recognize PIs and recruit PLC to the membrane where it can carry out it’s catalytic function.
PLC beta
Activated by Gq beta gamma subunits and alpha subunits.
PLC gamma
Activated through a pathway involving receptor tyrosine kinases. Once activated the receptor phosphorylates tyrosine residues on substrates which serves as a docking site for SH2 domains. These can then activate PLC gamma which will cleave PIP2 into IP3 and DAG..
What is the major calcium sensing protein in animal cells?
Calmodulin: capable of binding 4 different calciums in regions called EF hands. Binding induces a conformational change depending on how many are bound (2-4 to activate), which exposes it’s active sites that can either activate or inhibit proteins.
What are some sources of calcium
Extracellular: voltage gated calcium channels and various ligand gated channels.
Endoplasmic Reticulum: IP3 receptors and ryanodine receptors.
What are some calcium removal mechanisms?
Plasma membrane Na/Ca exchanger. Calcium ATPase pump. Mitochondria. Rapid removal and effective buffering.
What are some key features of calcium signaling
Amplification, spatial localization (allows for discrete transduction events within the cell), or propagation as a wave of oscillations due to complex positive and negative feedback of calcium on IP3 receptor (low concentration of calcium activates IP3, high concentration inhibits IP3).
Protein Kinase C
Phosphorylates hydroxyl group of serine and threonine residues within a consensus sequence. 3 subfamilies (~10 isozymes). Has regulatory and catalytic domains connected by a hinge region. Involved in: vascular smooth muscle contraction (alpha 1 adrenergic receptor), neurons in autonomic ganglia (M1 receptor), implicated in addiction (amphetamine, cocaine; dopamine uptake stimulated by PKC).
Phorbol esters
(TPA/PMA). Potent tumor promoters that mimic DAG and activate cPKC and nPKC. Are also potent inflammatory inducers. Longer lasting in the cell than DAG.
Classical PKC
cPKC:(Alpha, beta I, beta II, and gamma): require DAG, Calcium, and phospholipid for activation. DAG and calcium work synergistically.
Novel PKC
nPKC:(delta, epsilon, n, and theat): require DAG but not calcium.
Atypical PKC
(I, squiggly, N1): require neither calcium nor DAG.
What is the mechanism of activation of protein kinases?
Removal of autoinhibitory pseudosubstrate domains. Some protein kinases with this mech include PKA, CaMKII, and PKC.
CaMKII
Activated by calcium. Can then phosphorylate substrates.
How is PKC activated?
Activated by DAG, calcium, and PS which bind to regulatory domains causing a conformational change that exposes the active site of the catalytic domain.
Calcium ionophores
Used to artificially raise calcium concentrations. They are pores that allow calcium to flow. This bypasses the rest of the pathway.
Nitric Oxide
Synthesized from Arginine and oxygen via nitric oxide synthase. This is a calcium dependent synthesis. Also forms citrulline in the process. Can diffuse from endothelial cells to cause relaxation of smooth muscle cells by activating guanylyl cyclase which increases levels of cGMP, which in turn activates protein kinase G. PKG can then activate MLC Phosphatase which can dephosphorylate and inhibit myosin light chain leading to relaxation. Also decreases calcium levels via PKG.
Guanylyl cyclase
Contains a heme group. Catalyzed cGMP formation from GTP. Nitric oxide binds to the heme group to activate guanylyl cyclase.
Nitric Oxide Synthase
Activated by Calcium-Calmodulin. Catalyzes synthesis of nitric oxide from Arginine. Synthetic Arginine analogs (NMME and L-NAME) inhibit nitric oxide synthase.
Organic nitrovasodilators (nitroglycerine) and NO donors (nitroprusside)
Work to create their own NO and get coronary arteries dilated.
cGMP phosphodiesterase inhibitors
Inhibit cGMP PDE which leads to increased cGMP levels giving higher activity of PKG leading to relaxation.