Exam 3 Flashcards
How are proteins broken down in gut
by specific peptidases
How are proteins broken down in tissues
in peripheral tissues, glutamine accepts N from other amino acids and then goes to the liver/kidney where it become glutamate then alphaKG, this is catalyzed by glutamate DH (minor pathway= arginine and production of NO)
Issues with metabolism of proteins containing branched chain
require special enzymes: defect: maple syrup urine disease
What makes an amino acid glucogenic vs ketogenic
used as substrates for gluconeo vs acetyl coA which then goes through krebs and can make ATP via this cycle or be used for ketone synth
Flow of nitrogen from an amino acid to urea
Nitrogen can be put onto glutamate by transamination and then become either ammonia or be moved onto asp (asp will also enter the urea cycle by combining carbamoyl phosphate)
post translational modifcation of aminos
oh-pro, oh-lys, gamma carboxyglutamate
Scurvy
reduced collagen synthesis due to lack of vit c which is co-factor for lysyl oh-lase
co-factors: enzymes/diseases
Scuvy, glytamyl carboxylase, aminotransferases
Vit-c for lysyl oh-lase, Glu to gamma carboxyglutamate is (vik-k) dependent and involved in clotting, aminotransferases: B6 (pyridoxal phosphate)
protein degradation: intracellular paths(2)
Ubq-proteasome
lysosomal pathway
transamination
occurs via aminotransferases, converts one a-keto acid to its corresponding aa to another a-keto and its aa
Pepsinogen cleave by ___
Hcl
Pepsin is a __peptidase
endo
Trypsin is cleaved by __
enteropeptidase
Most zymogens are cleaved by __
trypsin
Ubq-proteasome is an ATP (in/dependent)means of breaking down proteins
dependent (b/c x-linking protein to ubq)
Entry points for N in urea cycle (2)
Aspartate, free ammonia
What is the Keq of transamination
1, reversible
Direction of transamination depends on __
[] of substrates
where does urea cycle occur?
conversion of ornithine to citrulline occurs in mitochondrion, everything else occurs outside in cytosol
regulated step of urea cycle
formation of carbamoyl phosphate by carbamoyl phosphatase synthetase I
Control points of urea cycle
carbamoyl phosphate synthetase I in MITOCHONDRIA (note that II is in cytosol)
allosteric (+) n-acetylglutamate (the only one!) indirect indication that a lot of substrate is coming b/c it is made from glu
means of ammonia transport in the blood
most tissues use glutamine often “holds” two ammonia groups, muscles instead uses alanine (b/c of pyruvate buildup which can be converted to alanine)
difference b/w ketogenic and glucogenic AA’s
produces pyruvate or TCA cycle intermediates, keto: acetyl coA or acetoacetate is produced
MSUD: what is the pathology caused by? how to tx?
buildup of leucine, valine, isoleucine products b/c branched chain DH complex is deficient… but only need to exclude leucine b/c it is neurotoxic
Thyroid chem
Thyroid hormone, T4=4 iodines hooked onto 2 tyr (t3 is 3)
Sulfur containing AA
met, cys
Biologic utility of Cys in regard to its oxidative state (alone or with glutathione)
Cys forms disulfide bridges when oxidized, in its free form when it is reduced
when GSH is present, it acts as a chaperone to ensure that correct disulfide bridges form
Describe Met metabolism, its relation to SAM, and energy provided by SAM
SAM=S-adenosylmethionine, SAM is major methyl donor and can store energy like ATP
Met becomes SAM when it is activated by ATP, methyl group is then able to move and be donated to other molecules (eventually becomes homocysteine)
Note that you can go from homocys to met backwards using THF
i.e. NE to epi
hyperhomosystinemia
Elevated levels of homocysteine and low levels of cysteine b/c homcys can’t be converted into cys, due to low levels of folate, B6 (tx with b6, b12, folate) cysteine an essential AA b/c it can’t be made from Met w/o these AA’s
homocystinuria signs
Mental retardation, osteoporosis, vascular disease result from defect of CBS (cystathione B synthase) (can’t convert homocyst to cystathione)
cysteinuria
kidney stones, due to defective renal transporter cysteine, ornithine, lysine and arg crystallize in urine, use acetazolamide to make cys more soluble
Biologically important molecules derived from Trp
Metabolized into Pyruvate, Acetyl CoA,
BH4 required as a cofactor
1. serotonin 2. melatonin 3. niacin
Lead poisoning affects which enzymes
d-aminolevulinate dehyrdratase and ferrochelatase
Lead poisoning affects which enzymes
d-aminolevulinate dehyrdratase and ferrochelatase
Steps of heme degradation
heme, biliverdin, bilirubin, bilirubindiglucuronide, urobilinogen, stercobilin
what is conjungated bilirubin, where is it made
bilidiglucuronide, liver
where is stercobilin made
intestine
what is the limiting step in jaundice
bilirubin glycuronyltransferase cannot convert bilirubin to bili diglucuronide fast enough
Signs of lead poisoning?
LEAD: Lead lines on gingiva, Encephalopathy/erythrocyte basophlic stippling, Abdominal colic/sideroblastic Anemia, wrist and foot Drop
Signs of lead poisoning?
LEAD: Lead lines on gingiva, Encephalopathy/erythrocyte basophlic stippling, Abdominal colic/sideroblastic Anemia, wrist and foot Drop
sources of atoms in purine and pyrimidine bases, key cofactors, source of energy involved in de novo synthesis
Atoms: N sources: Glutamine, Glycine, Asp, THF C: CO2 co-factors: AMP, GMP Energy:
key differences b/w purine and pyrimidine synth
Pyrimidines (purines)
- base ring is synthesized then attached to the ribose
- initial nucleotide product is UMP (IMP)
- UMP converted to C as a triphosphate (IMP converted to A, G as a ?)
key regulated steps and feedback loops: purine and pyrimidine synth
purine: glutamine phosphoribosyl pyrophosphate amidotransferase (first N added to PRPP) activated by: PRPP, (-) AMP, GMP, IMP
Pyrimidine: carbamoyl phosphate synthetase II (activated by PRPP and inhibited by UTP)
ribose to deoxyribose enzyme, regulation and substrates
ribonucleotide reductase, (-) dATP
Major difference b/w carbamoyl phosphatase used in urea cycle vs in pyrimidine synthesis
urea: CPS I: located in mitochondrial matrix, N source=ammonia, Activated by N-acetyl glutamate
pyr: CPS II: located in cytosol, gamma amide group of glutamine, activated by: ATP, inhibited by UTP
Gout: enzyme target for tx
usually a defect of decreased excretion, tx with allopurinol that blocks xanthine oxidase and increases amounts of soluble precursors
SCID: enzyme deficient
adenosine deaminase (ADA), thus we get buildup of dATP which then leads inhibition of ribonucleotide reductase
Lesch-Nyhan: enzyme deficient
deficiency of HGPRT (active in purine salvage)
How 5-FU (and similar) inhibit nucleotide synth
targets thymidylate synthase and folate metabolism
Acycylovir
targets viral DNA pol and reverse transcriptase
Acroparesthesia, renal failure, proteinuria, angiokeratomas
Fabry
Bone pain, hepatosplenomegaly
Gaucher
Short stature, hepatosplenomegaly, coarse facial features
Hunter
Short stature, hepatosplenomegaly, coarse facial features, corneal clouding
Hurler
Cherry red spot, hepatosplenomegaly, foam cells
Niemann Pick
severe LVH, high voltage EKG, muscle weakness, sleep apnea
Pompe
cherry red spot, increased startle
Tay Sachs
muscle cramping, myoglobinuria
McArdle
Inheritance of LSDs
autosomal recessive except for fabry and hunter which are x-linked
special issues with feeding pt with resp failure
resp: careful of overfeeding b/c more co2 will be produced and more ventilation will be needed however, underfeeding will lead to further resp muscle weakness
When to feed?
10-14 days for prev healthy
5-7 days if undernourished and minimal medical illness
3-5 days if undernourished and severe illness
(shorter in infants and children b/c lower stores)
special issues feeding patient with liver failure
Liver: limit protein, salt, and h20 intake (prevent ammonia production and increased fluid retention)
special issues feeding patient with renal failure
renal: limit dietary protein (to prevent BUN levels from rising due to protein catabolism)
special issues feeding pt with cardiac failure
cardiac: restrict sat fat, Na, fat (restrict overload, restrict energy in overwt pts)
special issues feeding patient with diabetes
diabetes: restrict carbs, also could keep diet similar to home diet to avoid changing meds so often
Difference b/w cysteine and cystine
cystEine is reduced, cystine is oxidized
which amino acid derivative is associated with vascular disease?
homocysteine
newborn screening criteria
Wilson-junger
- should be public health concern
- should have a pre-clinical phase
- should be treatable
- test should be acceptable to population
- natural hx adequately understood
succinylacetone in urine
tyrosinemia
palmarplantar hyperkeratosis
present in tyrosinemia type II
homocysteinuria (duplicate, consolidate)
looks exactly like marfans
pectus carinatum, myopia, scoliosis, lens dislocation (can’t metabolize met, homocysteine), can tx with b6 and betaine
most common UCD
ornithin carbamylase deficiency
NO METABOLITE to check for on newborn screening
ammonia is very volatile
dx metabolite: orotic acid