exam 3 Flashcards
what directs the synthesis of proteins
genetic information
T/F the cell expresses all genes at the same rate
FALSE: genes are expressed at different rates depending on what protein is being synthesized bc the body might need more/less of that protein
what is the difference between DNA and RNA
DEOXYribonucleic acid vs RIBOnucleic acid mwans that the sugar in the backbone has on less oxygen in DNA, and RNA uses uracil instead of thymine
what bonds hold the backbone of RNA together
phosphodiester bonds
how many strands does DNA have
2
how many strands does RNA have
1
T/F RNA base pairs can pair to each other
TRUE: this often happens to help fold the RNA into a specific shape by connecting base pairs that are close together
what is the difference between conventional and nonconventional base pairs
conventional: A-U; C-G
nonconventional: anything else that happens when RNA is folding to a shape, but there still happen to keep the shape together even though its not favorable
what does the DNA coding strand do
the coding strand directly matches what the RNA is going to look like, but it does not work to guide the RNA synthesis
what does the DNA template strand do
the template strand is what the RNA strand is based off of, and the complimentary pairs that form the RNA are taken from this strand
what protein transcribes the DNA into RNA
RNA polymerase
what direction is RNA synthesized in
5’ to 3’
what direction is the template strand being read in
3’ to 5’
T/F only one RNA polymerase can work at a time
FALSE: there can be many polymerases synthesized different parts of the gene at once
what does messenger RNA (mRNA) do
codes for proteins
what does ribosomal RNA (rRNA) do
forms the core of the ribosome’s structure and catalyzes protein synthesis
what does transfer RNA (tRNA) do
serves as adaptors between mRNA and amino acids during protein synthesis
what does the promoter on DNA do
it tells the RNA polymerase where to begin the gene transcription
what does RNA polymerase do when it reaches the promoter
it begins transcription there and it releases it’s sigma factor which is what read the promoter gene
what does the terminator on DNA do
it tells the RNA polymerase where to stop the transcription of the gene
T/F only side of the DNA strand can be the template strand
false, both can be the template strand but for different genes and they can read multiple in opposite directions at once
how many RNA polymerases are there
3
what does RNA polymerase I do
it transcribes most rRNA genes
what does RNA polymerase II do
it transcribes all protein genes
what does RNA polymerase III do
it transcribes tRNA and other small RNAs
what does RNA polymerase II need to start transcription
general transcription factors
what is the TATA box
the promoter that tells the polymerase where to begin transcription
how is the TATA box read
the general transcription factor TFIID is what moves along the DNA, and the TBP (tata binding protein) is what reads and recognizes the tata box
what happens after the TATA box is read
the TFIID binds to the DNA and distorts the shape of it, which allows the TFIIB and all the other general transcription factors to bind
what does the TFIIB do
this is what goes along the DNA strand and hold the TBP
what does the TBP do
this is the TATA binding protein that is on the TFIIB and reads the TATA sequence
what does the TFIIB do
this is the first general transcription factor that attaches to the kinked strand once the tata box is read
what does the TFIIH do
this opens the double helix DNA strands at the transcription start point by using ATP
this also phosphorylates the RNA polymerase II to start the transcription
generally, what does TFIIF do
helps the RNA polymerase II connect onto the other transcription factors before it starts transcription
generally what does the TFIIE do
this is part of the formation and activation of the RNA polymerase II
what is the location of the TATA box
-30
what general transcription factor binds at -35
TFIIB
what general transcription factor binds at -30
TBP which is within TFIID
how does RNA polymerase II transcribe the DNA that is wrapped around a histone (in a nucleosome formation)
elongation factors
where are eukaryotic mRNAs processed
in the nucleus
what 3 things can help modify an RNA as it is being transcribed
capping factors, splicing factors, polyadenylation factors
what are the special structures on mRNA
has a cap on the 5’ end and a poly-A tail on the 3’ end
there are also untranslated regions after the cap and before the poly-A tail, but have the actual coding sequence in between them. 5’UTR and 3’UTR
what does the capping factor do to the RNA
this makes it start to become mRNA bc it adds a cap to the 5’ end of the RNA that is being created
what does the polyadenylation factor do to the RNA
this makes the poly-A tail on the 3’ end of the mRNA
when are the cap and poly-A tail added
after transcription has finished
what is the structure of the 5’ cap on mRNA
7-methylguanosine and a triphosphate bridge
what is an intron
a non coding gene in a eukaryotic DNA strand
what is an exon
a coding sequence of DNA in a eukaryotic cell
what turns the pre-mRNA into mRNA
the introns are removed by splicing factors to turn the pre mRNA into regular mRNA
- the untranslated regions stay at the ends
how does RNA splicing work
spliceosome takes the intron and makes it into a lariat (a lasso looking circle thing) and it then gets removed
- the mRNA gets put back together then
T/F splicing has to happen after synthesis
FALSE: these processes can be happening on the same strand at the same time, but the synthesis has to be complete before that specific area can be spliced
what happens to the intron lariats
they will eventually get degraded into the nucleus
what is an alternative splicing mean
when a pre-mRNA actually has an exon removed to form another type of mRNA
where do mRNAs have to go before they can be translated
they have to go from the nucleus where they were made and be exported to the cytosol through pores in the nuclear envelope
what does the poly-A binding protein and the cap binding protein do
this binds to the poly-A tail and the cap to tell the transport molecule that the mRNA is complete and can be exported through the nuclear envelope pores
T/F prokaryotes are easier to produce mRNA in than eukaryotes
TRUE: prokaryotic cells have transcription and translation occurring in the same location in the cell, so translation can happen before transcription even finishes
what happens to all mRNAs eventually
they degrade into RNases
what is the start codon for all proteins
M methionine - AUG
what is the central dogma
DNA to RNA to PROTEIN through replication transcription translation
how many reading frames are there
3
what is a frame shift mutation
where one or two bases is removed the protein doesn’t form like normal bc the reading frame has been shifted to reflect something else
how did researchers decipher genetic code
they put different mRNAs into a translation system and saw the different types of polypeptides that were produced
what shape do tRNA molecules usually form into
a clover
what is the anticodon
at the bottom clover of the tRNA, there is a codon that base pairs with the amino acid that is attached at the top of the tRNA, so that it can look for that amino acid along the strand
what does the tRNA do
they are adaptors that link the amino acids to the codons
what enzyme couples the tRNA to the correct amino acid
aminoacyl-tRNA synthetase
what does the aminoacyl-tRNA synthetase do
it has a tRNA in it, and it finds the correct amino acid to attach to the top of it.
this will be used when the tRNA matches with it’s opposite codon on the mRNA strand which then the amino acid at the top can be added to the protein chain
where is mRNA decoded
on ribosomes (in the cytosol and on the ER)
what are ribosomes made from
a large subunit and a small subunit
what is the large subunit of a ribosome composed of
49 ribosomal proteins and 3 rRNA molecules
what is the small subunit of a ribosome made of
33 ribosomal proteins and 1 rRNA molecule
T/F a ribosome is an enzyme
TRUE: it catalyzes the formation of covalent bonds between amino acids when making proteins (sometimes called a ribozyme)
what are the binding sites within a ribosome
there are 3 sites for tRNA (spanning both large and small subunits - A P E) and one site for mRNA (only in the small subunit)
how many steps does translation have and what are they
4 steps
what is the first step of translation
tRNA carrying an amino acid will enter the A site and stay if it has the correct anticodon
what is the second step of translation
the amino acid at the top of the tRNA that was at the P site is linked to the amino acid on top of tRNA at the A site, and then is removed from the tRNA that it was on to become freely moving as part of the protein chain
what is the third step of translation
the large subunit shifts to the right to make the P and A sites turn into E and P sites
what is the fourth step of translation
the small subunit catches up with the large subunit to shift over the mRNA that is bound in it, so that the next codon can be attached to a tRNA in the A site. the tRNA that was in site E is ejected before another tRNA attaches to site A. this is the last step and then step 1 will start again