EXAM 2: Master Deck Flashcards
A child with reoccurring pyogenic infections such as those caused by Staphylococcus aureus suggests a defect in what parts of the immune system?
Group of answer choices
T-cell development
Antibody, complement, or phagocyte function
Eosinophil function
T-cell responses
Antibody, complement, or phagocyte function
A boy with a mutated IL2RG gene will most likely present with
Group of answer choices
High antibody levels
Low T cell count
Low B cell count
No symptoms
Low T cell count and NK
The following flowing flow cytometry plot comes from a boy with reoccurring pyogenic infections. Based on plot, what disease does this child most likely have?
Hint CD3 is a marker for T cells and CD19 is a marker for B cells
Group of answer choices
XLA
Perforin deficiency
Elastase deficiency
SCID due to gamma chain deficiency
XLA
True or False
The immune system cannot control nor eliminate an HIV infection
Group of answer choices
True
False
False
Which of the following is true regarding immune amnesia after a measles infection?
Group of answer choices
Memory cell diversity is unchanged but antibody levels are low against other antigens
None of the answers provided are true
Memory cells against measles antigens are high but low for other antigens
Memory cells against measles antigens and other antigens are low
Memory cells against measles antigens are high but low for other antigens
The site where immune cells are activated is called the ________ site
Inductive
The following intestinal epithelial cells fall under the secretory subset except
Goblet Cell
Paneth cell
Tuft cell
Microfold Cell
Microfold cells
What is the function of an intraepithelial lymphocyte?
None of the answers provided
Travel to the lymph nodes to activate B cells
Activate the innate immune response
Eliminate IEC that are infected, damaged or stressed
Eliminate IEC that are infected, damaged or stressed
True or False
Treg cells are the primary T cell response in mucosal tolerance
True
False
True
All of the following are true regarding the microbiota except
All of the answers provided are functions of the microbiota
Plays a role in the development of the mucosal immunity
Prevents the colonization and/or overgrowth of pathogenic microbes
Provides factors to maintain mucosal tolerance
All of the answers provided are functions of the microbiota
Which hypersensitivity reaction is mediated by immune complexes?
Type III
Type I
Type II
Type IV
Type III
What is common among all IgE mediated hypersensitivity reactions?
Degranulation of mast cells
Tissue damage by immune complexes
Tissue damage by cytokines production by T cells
Degranulation of neutrophils
Degranulation of mast cells
True or False
Allergic reactions caused by urushiol in poison ivy require the binding of a host protein in order to illicit and immune response
True
False
True
Bronchial constriction, increased mucus production, airway inflammation, and bronchial hyperactivity are all responses to what reaction or disease?
Select all that apply
Asthma
Urticaria
Systemic anaphylaxis
Food allergy
Asthma, Rest are vasodilation not constriction
True or False
According to the hygiene hypothesis, a child raised in a developed urban environment will less likely develop allergies and autoimmune diseases compared to a child raised in a developing rural environment
True
False
False
True or False
In multiple sclerosis, antibodies are mainly responsible for activating the immune system against the myelin sheath
True
False
False
In the following image, what will be the response to the graft that is transplanted into the host mouse (recipient)?
The graft will not be rejected
The grafted will be rejected
The graft will be rejected
________ is when the immune system targets transplanted tissue
Alloimmunity
Cross-reactive antibodies that cause damage to the heart valve tissue occurs in which disease or condition
Select all that apply
Rheumatic fever
Grave’s disease
Multiple sclerosis
hemolytic anemia
Rheumatic fever
True or False
Damage to an immunologically privileged site can induce an autoimmune response
True
False
True
Which of the following APC mainly presents antigens to activate naive T cells?
Plasmacytoid dendritic cell
Conventional dendritic cell
B cell
Macrophage
Conventional dendritic cell
True or False
Monocyte-derived dendritic cells directly present the antigen to naive T cells
True
False
False
Match the following signals with their purpose in the T cell:
TCR/co-receptor and MHC:peptide complex, Co-stimulatory signals, Cytokines
Bank:
Survival and proliferation, Activation of the T cell, direct differentiation
TCR/co-receptor and MHC:peptide complex
Activation of T cell
Co-stimulatory signals
Survival and proliferation
Cytokines
Directs differentiation
Based on the diagram below, the CD4 T cell will develop into which subset?
Th1
Th2
Th17
Tfh
Treg
Th1
What is the function of serglycin in a cytotoxic T cell?
Facilitates the release of cytochrome C
Forms pores on the target cell
Serves as a scaffold to form complexes with perforin and granzymes
Activates the apoptosis pathway in the target cell
Serves as a scaffold to form complexes with perforin and granzymes
Which if NFkB pathway is illustrated below?
Canonical
Noncanonical
Canonical
______ zone is the site where centroblast proliferate
Dark
Which of the following antigens can result in polyclonal B cell activation?
TI-2
TD
TI-1
TI-1
True or False
IgG can directly cross the placenta without a carrier
True
False
False
Double strand breaks is required for which of the following
Somatic Hypermutation
Antibody class switching
Dendritic cell maturation
CD4 T cell differentiation
Antibody class switching
Which of the following T helper cell subset is illustrated below
Th1
None of the answers provided
Th17
Th2
Th2
What is a complement fixation test?
- Used to detect presence of antibody or antigen in sera
What is ELISA?
- Enzyme-linked immunosorbent assay
- Plate based assay to detect and qualify solubles (peptides, proteins, antibodies, hormones
- Uses antibody conjugated to enzyme
- Horseradish Peroxidase (substrate TMB)
How is an ELISA carried out?
What is IGRA?
- Interferon gamma release assay
- Whole blood tests that can aid in diagnosis of tuberculosis
- Incubate blood with TB antigens, if person has TB they will have TB specific T cells
What is flow cytometry?
- Provides rapid multiparameter analysis of single cells in solution (NIH)
- Provides size, shape, complexity, fluorescence
- Uses forward scatter and side scatter fluorescence
- Enumberates and sorts cells
- 3 major components - fluidics, optics, electronics
What type of particles can be analyzed?
- Viruses, exosomes, bacteria, rbc, animal cells, plant cells, oocytes
- 100 um to 100 nm
What type of data can be gathered from flow cytometry?
- Histogram, Dot plot, Pseudocolor, Contour
What is forward scatter? What is side scatter?
FSC
- Indicates cell size
- Proportional to cell size
- Higher FCS is larger cell
SSC
- Indicates cells internal complexity/granularity
- More granules and organelles a cell has the higher the SSC
How are FSC and SSC plotted on a graph?
What is fluorescence?
- Tag cells using fluorescent antibodies to measure cell concentrations
- Measures single or multiple targets
What is Gating?
- Selecting of data points for analysis using graphical or numerical boundaries
How can cells be sorted in flow cytometry?
- Fluorescence activated cell sorting
What do secondary lymphoid structures do?
- Facilitate interaction of circulating T and B lymphocytes with antigen
- Makes surveilling entire body possible because antigen must be transported to secondary lymphoid to encounter naïve lymphocyte
(3)
What does the spleen do? Where do circulating pathogens delivered? What are periarteriolar lymphoid sheath (PALS) or follicles?
- Specialized to capture antigens that enter bloodstream
- Circulating antigens, B and T cells are delivered to marginal sinus
- Rich in dendritic cells, macrophages and marginal
zone B cells
- Rich in dendritic cells, macrophages and marginal
- T and B cells leave marginal sinus and travel to PALS or follicle
- Reticular fibroblast makes chemokines (CCL 19TH,21) to attract T cell (CCR7) from the sinus
- Follicular dendritic cells make chemokines CCL 13TH to attract B cell (CXCR5) from sinus
How do antigens enter the lymph node? How do B and T cells enter?
- Antigens enter via afferent lymph vessels in subcapsular sinus
- Lined by phagocytes that trap free antigen/pathogens
- T and B cell enter via small blood vessel High endothelial venules (HEVs)
How are antigens transported to peyer’s patch? Where do B and T cells enter? What do dendritic cells in peyer’s patch do?
- Antigens transported from lumen via microfold cells (M cells)
- T and B cells enter via HEVs
- Antigen-loaded dendritic cells are surveyed by T cells in T cell zone, If antigen is unrecognized it will be transported to mesenteric lymph node for further surveying
Describe the recirculation of T cells through lymph vessels.
- A T cell starts at lymphatic capillaries and makes its way through afferent LVs. Afferent lymph vessels to lymph nodes where it can encounter an antigen presenting cell. T cell will travel through efferent lymph vessels through a series of lymph nodes until it reaches the Thoracic duct. After the Thoracic duct T cells will enter circulation to reach tissue and continue to cycle through. (7)
How is the development of secondary lymphoid tissue initiated?
- Initiation by lymphoid tissue inducer cells and cytokines of the tumor necrosis factor family
How does T cell entry to lymphoid tissue occur? What is it similar to?
- Entry is mediated by the sequential actions of adhesion molecules and chemokine receptors
- Similar to recruitment of leukocyte to inflamed tissue (9)
Do all tissue use the same adhesion molecules?
- No, different tissues use different adhesion molecules
- CCL19, CCL21, CCR7, L-selectin, Integrins
Describe the motility of T cells. What is in the surfaces of sinusoid-like spaces? How are follicular dendritic cells networks similar?
- Highly motile within T-cell zone to survey dendritic cells for cognate antigens
- Surface of sinusoid-like spaced decorated with CCL19 and CCL21
- Chemokines used to help transport T cells and attract dendritic cells
- Similar network formed by FDCs in B cell follicles and is decorated with B cell chemoattractant CXCL13
What do FRCs do?
- Produce extracellular matrix that forms a meshwork(conduit) in T cell zone
What happens if a naive T cell recognizes a specific antigen on the surface of an activated dendritic cell?
- Its locomotion is arrested and it is retained in the T cell zone
- Proliferation for several days = effector T cells and memory cells
- Most effector T cells exit the lymphoid organ and reenter the bloodstream to site of infection
- Others migrate to B cell zone where they participate in germinal center response to help make antibodies
Explain how T cell screening is very efficient. Outline the motility, density, surface area, TCR, and circulation rate is related.
- Each T cell has a high probability of encountering antigen anywhere in the body
- High motility of T cells, 2 cell diameters per minute
- High density of T cells and recruitment of dendritic cells in T cell zone
- Large SA of dendritic for MHC complexes and contact
- TCR is very sensitive to antigen, one peptide can be enough to activate MHC and some T cells
- High rates of circulation if T cell does not encounter its antigen
How many dendritic cells does a T cell encounter in an hour?
- 100 per hour
- Local inflammation stimulates marked increase in influx and decrease efflux of lymphocytes into and out of lymph node contributing to node swelling
How is the exit of T cells from the T cell zone controlled? What role do S1P and S1P lyase play in this?
- Exit is controlled by chemotactic lipid (sphingosine-1-phosphate) S1P
- There is a gradient bt T cell zone and lymph. S1P made by epithelial cells lining lymph vessels, lyase made by lymphatic tissue
- S1PR1 (receptor)
- Low levels on surface of naive T cells that recently entered T cell zone
- If S1PR1 does not recognize antigen, upregulated = directs cell into cortical sinus = into efferent lymphatic vessel
- Activated T cell upregulated CD69 = S1PR1 internalized. Eventually CD69 will fade and S1PR1 will reexpress
What MHC molecules is antigen presenting? What are the three major APCs?
- MHC II
- Dendritic cells, macrophages, B cells
What are the two major classes of dendritic cells?
- Plasmacytoid dendritic cells
- Sentinels for viral infections, produced by T1 interferons
- Conventional dendritic cells
- Present antigen to T cell, found in nonlymphoidal tissue particularly at barrier tissue sites (NLT)
- Lymphoid tissue found in T cell zone of secondary lymphoid tissue (LT)
What happens when a conventional dendritic cell activates?
- The maturation is stimulated and migration to T cell zone to induce naive T cell activation
Immature cDC
- Low expression of co-stimulatory molecules and cannot activate naive T cell
- Actively phagocytic
Mature cDC
- High expression of co-stimulatory and MHC molecules can activate t cells
- Non-phagocytic
What routes of antigen processing and presentation are possible by dendritic cells?
- Receptor mediated phagocytosis, Macropinocytosis, viral infections, cross presentation after phagocytic or macropinocytic uptake, transfer from incoming dendritic a cell to resident Dendritic cell
- Different responses vary on viruses, bacteria, or fungi
What is the purpose of having subsets of conventional dendritic cells?
- Some are specialized for different modes of antigen presentation
- cDC1- T1 conventional dendritic cell
- Specialized for activating/priming naive CD8 T cells
- cDC2 - T2 conventional dendritic cells
- Specialized for activating/priming CD4 T cells
What are Monocyte-derived DCs? What are Langerhans cell?
- MoDCs take up antigen and deliver it to T cell zones
- Transfer antigen to LT-resident cDCs
- Specialized macrophages that reside in epidermis
- no cDCs in skin
- Take up antigen and transfer it to LT resident cDCs
How can MHC molecules and TCRs interact?
- Transient binding of T cells to dendritic cells
- Transient adhesion interactions are stabilized by specific antigen recognition
What type of signals can be delivered from cDCs to activate naive T cells?
- Interactions bt TCR/coreceptor and MHC:peptide complex, essential for activation
- Co-stimulatory signals, essential for Proliferation and survival
- Cytokines, essential for directing differentiation
What preparations occur when a T cell is activated?
- Induces metabolism to prep for rapid clonal expansion and differentiation
- Naive T cells have condensed chromatin arrested in G0
- Within hours of activation, the cell will undergo metabolic shift and change in morphology to prep for cell division
What is occurring in this image?
- Naive T cells is being activated by TCR and CD-28 mediated signaling leading to waves of signaling proteins leading to gene expression and cell cycle progression and clonal expansion
What happens to T cells after antigens are cleared?
- Most will be cleared via apoptosis (clonal contraction)
- 5-10% remain as memory T cells
What does the rapid expression of IL-2 result in? What Cytokines respond?
- Allow for the activation of T cells to respond to cytokines
- IL-2R
- IL-2RB/CD122, IL-2R lambdaC/CD132, IL-2Ra/CD25
What does IL-2 promote? What do Treg cells do?
- Promotes proliferation and differentiation However it more importantly generates and maintains Treg cells
- Mice without IL-2 have uncontrolled T cell proliferation and autoimmunity
- Treg cells cannot produce IL-2 and produce IL-2Ra
- take up most IL-2 until activated T cells express IL-2Ra
How are IL-2 and IL-2Ra induced in activated T cells?
- Secretion and expression are deferentially induced
- Based on TCR signal strength
- IL-2 Produced by one cell binds to high affinity IL-2 receptor of different T cells (paracrine)
What happens with receptors when T cell activation occurs? Why does this occur
- Inhibitory and co-stimulatory receptors are engaged to control clonal expansion and contraction
- CD80 and CD86 are important costimulatory molecules on APCs that bind to CD28 on T cells
What does CTLA-4 do? What can activate NFkB pathway?
- Inhibitory receptor for B7 molecule
- Multiple members of the TNF-TNFR superfamily can activate the pathway to sustain T-cell response
What happens to proliferating T cells?
- Differentiate into effector T cells programmed for altered tissue homing and loss of requirement for costimulation to act
- Cells presenting antigen on MHC may not express costimulatory molecule
What type of cell surface molecules are found on naive vs effector cells?
- TCR, L-selectin, CCR7, LFA-1, CD45RO
How can CD8 T cell be activated?
- Will become cytotoxic effector cell
- Can take up cDC1
- APC stimulation to induce expression of CD40L and IL-2 which cascade leading to production of IL-12
WHat subsets do CD4 T cells differentiate into? What are the two pathways of Treg development?
- TH1, TH2, TH17 are called non-TFH cells
- Positive selection in thymus
- Naive CD4 T cells develop into Treg in peripheral lymphoid organs (pTreg)
What role do cytokinesplay in the differentiation of CD4 T cells?
- Antigen presenting cells (mainly dedritic) and other innate immune cell can provide cytokines to induce naive CD4 development
What are TFH cells and how do they develop with respect to CD4 T-cells?
- Effector CD4 T cell subsets develop in concert
- TFH cells can produce Cytokines that influence isotype class-switching
- Primarily produce IL-21 which is important for optimal production of high-affinity, class-switched antibodies
- Helps antigen activated B cells develop into effector cells of different isotypes
What transcription factor is important for TFH development? What happens to naive T cells that produce IL-2?
- BCL-6 is important for TFH development. Expresses chemokines receptor CXCR5 which is essential for TFH localization in follicles
- Naive T cells that produce IL-2 become TFH cells while those that do not become non-TFH cells
- IL-2 Induces expression of tf BLIMP-1 which represses BCL-6
When do peripheral Treg cells develop? How do mucosal surfaces maintain tolerance for microbiota? What happens to a naive T cell in the presence of IL-6?
- Naive t cells are activated in the presence of TGF-beta and IL-2 (produced by dendritic cells)
- All-trans-retinoic acid (at-RA) binds to RA receptor (RAR) on T cell
- IL-6 and proinflammatory Cytokines are absent
- Development of pTreg maintains tolerance of microbiota
- In presence of IL-6 naive T cell will develop into Th17 cell
- Occurs when dendritic cell senses the antigen through TLR
- microbiota or pathogen penetrate epithelial barrier
How can CD4 T cell subsets be regulated?
- Subsets cross regulate each other’s differentiation through Cytokines production
- For immune response to be controlled efficiently, coordinated effector response must be orchestrated by one dominant subset
How can a T cell ensure it releases its effector molecules correctly?
- A synapse can form between the T cell and target to direct the release of the effector molecules
How are the effector functions of T cells determined?
- Determined by the array of effector molecules they produce, which can act locally or at a distance
How can cytotoxic T cells induce target cells to undergo programmed cell death?
Extrinsic (death receptor)
- Activated by FAS ligand (FasL)
- Formation of the death-inducing signaling complex(DISC)
Intrinsic
- Activated by the cytotoxic granules
- Formation of the apoptosome
What are the three major proteins in the granules of CD8 T cells? Why is apoptosis the preferential method of killing infected cells?
- Perforin - helps deliver contents of granule into cytoplasm of target cell
- Granzymes - serine proteases activate apoptosis when inside cytoplasm of target cell
- Granulysin - has antimicrobial action to induce apoptosis
How do T cells recognize their target and not harm other cells?
- Effector molecules are released from cytotoxic granules of a cytotoxic T lymphocyte in a highly polar way to prevent spillover to nearby cells
What else can cytotoxic T cells release?
- Cytokines IFN-gamma, TNF-a, LT-a all contribute to host defense
What does the NFkB family consist of? Do the Del homology domain have transcriptional activation domains?
- 5 transcription factors P50, p52, RelA(p65), c-Rel, RelB
- Form dimers through RHD
- RelA/p50, c-Rel/p50, RelB/p52
- RelA, c-Rel, RelB contain transcriptional activation domains (TADs)
- p50 and p52 do not have TAD and need to be bound to TAD-containing protein
- They’re all derived from p105 and p100 precursor
- Contain ankyrin repeats (ANK)
- Inhibited by IkB proteins in cytoplasm
What is the canonical/classical pathway? What is the noncanonical pathway?
Canonical
- IKK complex is activated by transforming growth factor-beta-activated kinase 1 (TAK1)
- Activated IKK phosphorylates IkBalpha
- Degraded by proteosome
- Predominant dimer is RelA/p50
Noncanonical
- IKKalpha is activated by NFkB-inducing kinase (NIK)
- Phosphorylates p100
- Undergo processing to p52
- Predominant dimer is RelB/p52
What is humoral immunity? How do antibodies protect (3)?
- Immunity due to proteins in the blood
- Complement and antibodies
- Protects extracellular spaces
- Neutralization
- Opsinization
- Complement activation
How are B cells activated? What are three signals like T cell activation?
- Activation by antigen involves signals from BCR and either helper T cells or microbial antigens
- BCR
- Costimulatory with TCR or microbial antigens
- Cytokines
How does B cell activation by antigen and helper T cells occur?
- Thymus dependent antigen
- Requires T cell help to produce antibodies
- Signaling by BCR is enhanced by co-receptors CD21, CD19 which interact with C3b on opsinized microbial surfaces
- TCR and co-stimulation provides second signal
What causes the transcription factor STAT3 to become activated? What happens?
- IL-21 actives the tf which enhances B cell proliferation and survival
How does a thymus independent antigen activate a B cell?
- Do not require T cells to produce antibodies
- TLR may provide second signal
- Less affinity and less functionally versatile
- Mostly IgM antibodies
- Two types of antigens
What does linked recognition of antigens result in?
- Linked recognition of antigen by T or B cells promotes robust antibody response
- Epitopes recognized by both B and T cells must be physically linked
What happens when a B cell encounter its antigen?
- B Cells that encounter their antigens migrate toward the boundaries between B and T cell areas in secondary lymphoid tissue
How do opsinized antigens entering the lymph nodes reach a Follicular dendritic cell and why do they go there?
- Opsinized antigens enter lymph node form afferent lymphatic vessel and bind are bound by receptors on macrophages. Antigens are then transported to Follicular dendritic cells which allow for the activation of memory and effector B cells
What do BAFF and APRIL do?
Promote B cell survival and differentiation
How is TFH cell development promoted?
- T cells express surface molecules and Cytokines that activate B cell to promote TFH cell development
- Activated B cells express ICOSL which is ligand for ICOS on T cell
- Signaling through ICOS completes TFH differentiation as it Induces Bcl-6
- Induction of SAP in TFH cells allow SLAM family receptors to mediate sustained contact with B cells
What are plasmablasts and plasma cells?
- Activated B cells that differentiated
- Plasmablasts are immature plasma cells that have the characteristics of activated B cells
- Proliferate, secrete antibodies, interact with T cells. Eventually die or mature into plasma cells and move into bone marrow
- Plasma cells are terminally differentiated effector B cells that secrete the most antibodies
What happens in the second phase of a primary B-cell immune response?
- Occurs when activated B cells migrate into follicles from the primary focus and Proliferate to form germinal centers
What is the mantle zone? What is the dark zone? What is the light zone?
- When germinal centers B cells displace the resting B cells towards the periphery of the follicle forming a mantle zone
- Site of proliferation of centroblasts. Express chemokine receptors CXCR5 and CXCR4
- Site of positive selection of centrocytes after somatic hyper mutation. Express CXCR5 but not CXCR4. Increased expression of BCR. Abundant FDCs for positive selection
What is the cyclic reentry of cells into the dark zone dependent on?
- Reexpression of CXCR4 on centrocytes
What happens to germinal centers B cells in the V region? How are mutations initiated?
- Undergo V region somatic hyper mutation and cells with mutations that improve antigen affinity are selected
- Intiated by the enzyme activation-induced cytidine daminase (AID)
- Expressed in extrafollicular and germinal centers B cells
- Mutation rate in V region is 10^3 vs 10^10 in other DNA regions
- Most mutations are detrimental which leads to apoptosis
- Involves class switching