Exam 2 Flashcards
enzyme-substrate complex
- enzyme changes shape to fit substrate
- pepsin (stomach protein); the substrate, a polypetide, is in active site
- machaelis-menton model for E-S complex
optimal temperatures and pH for enzymes
temp: 40 for human, 70 for enzyme from hot spring
pH: pepsin 2.5, trypsin 6.5
-reaction speed
catabolism
process by which we break down molecules into smaller units
-in cytoplasm
process of catabolism
- exergonic- release energy yielding nutrients: C, F, P
2. catabolism breaks it down into energy poor products: CO2, H2O, NH3
energy content
- the driving force is the net change
- count the # of H on the molecule
net change
G of reactants minus G or products
-G: release energy (exergonic)
+G: absorb energy (endergonic)
delta H
change in enthalpy
-loss of heat energy is favored
delta S
change in entropy
-increase in randomness is favored
coupled reactions
- photosynthesis has a positive change in energy content as energy is put in
- Sum’s fusion reaction has a massive negative change in energy content as light energy is released
oxidation reduction
oxidation- loss of electrons
reduction- gain of electrons
releasing energy
- massive explosion (can’t capture energy)
- metabolic pathways
metabolic pathways
- series of steps where each step releases a energy (ATP, NADPH, NADH, FADH2)
- series of enzymes changing the substrate to make product
substrate level phosphorylation
-pyruvate kinase binds PEP and ADP making pyruvate and ATP
NADH
- NAD+ is a coenzyme
- NAD+ and energy rich molecule go into enzyme and a chain of -e and +p is transferred making NADH (redox reaction)
- each in mitochondria membrane produce 2.5 ATP
decarboxylation
removal of CO2 from a molecule
pyruvate oxidation
pyruvate loses CO2 and CoA goes in while NAD+ goes into NADH making acetyl CoA
glutamate
glutamete has an amino group removed making alpha-ketogluterate (amino acid taking amino off and using molecule for energy)
cellular respiration
cells harvest energy by breaking bonds and shifting electrons across molecules
-aerobic and anaerobic respiration
-fermentation
(focus on carbohydrates, especially glucose)
aerobic respiration
final electron acceptor is oxygen
-for anaerobic its not
why glucose
- universal: everything does it
- glucose break down intermediates used for energy, reducing power, and as C skeletons to make other molecules
- central pathway of all biochemical processes
glucose
-main product of photosynthesis
-start point for cellular respiration in prokaryotes and eukaryotes
C6H12O6
glycolysis
- makes 2 ATP per glucose
- activated by glucose
1. C+glucose= fructose diphosphate
2. cleavage and rearrangement= PGAL + DHAP
3. energy harvesting reactions (substrate level phos.)
4. pyruvic acid
activation of glucose
hexokinase and phosphofructokinase
-add phosphates
harvesting energy from glucose
- PGAL makes 2 NADH (redox reaction)
- phosphoglycerate kinase and pyruvate kinase make 4 ATP each (substrate level phos.)