Exam 2 Flashcards

1
Q

atoms

A

smallest unit

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2
Q

molecules

A

made up of atoms

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3
Q

atomic number

A

number of protons in nucleus

number on bottom

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4
Q

isotopes

A

elements with different numbers of neutrons
eg: 16/8 O=8 neutrons
17/8 O=9 neutrons

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5
Q

atomic weight

A

total number of protons and neutrons in an atom

number on top

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6
Q

electron shells

A

corresponds to different energy levels

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7
Q

valence electrons

A

number of electrons on outermost shell

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8
Q

ions

A

charged atoms with gained or lost electrons

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9
Q

ionic bonds

A

attraction of ions with different charges (NaCl)

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10
Q

cations

A

positively charged ions

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11
Q

anions

A

negatively charged ions

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12
Q

covalent bonds

A

when 2 atoms share electrons, produces stronger bond than ionic
usually occurs when electrons are somewhere in the middle

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13
Q

hydrogen bonds

A

Bonds formed when hydrogen atoms covalently bind to Oxygen or Nitrogen and electrons are unequally shared
creates polar molecules
polar positive bonds to polar negative and vice versa

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14
Q

chemical reactions:

endergonic vs exergonic

A

endergonic: absorb or require energy
exergonic: release energy

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15
Q

Synthesis Reaction

A

atoms or molecules combine to create something new

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16
Q

anabolism

A

synthesis of molecules in a cell

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17
Q

Decomposition Reaction

A

molecules split into smaller molecules or atoms

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18
Q

catabolism

A

decomposition reactions in a cell—releases energy and requires complex molecules

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19
Q

Exchange Reaction

A

Part synthesis and part decomposition

NaOH+HCl–>NaCl+H2O

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20
Q

Inorganic Compounds

A

molecules usually small and structurally simple, which typically lack carbon and in which ionic bonds play an important role

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21
Q

Organic Compounds

A

always contain carbon and hydrogen and are structurally complex

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22
Q

Water

A

essential for all living things

creates polar bond

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23
Q

4 characteristics of water

A
  • Temperature buffer
    • High boiling point
    • Low melting point
  • Ice less dense than water because ice has fewer molecules than liquid water
  • Good solvent
  • Good reactant/or product in chemical equations(bc polarity)
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24
Q

acids

A

substance that dissociates into one or more hydrogen (H+) ions and one or more negative ions(anions)
HCl–> H+ Cl-

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25
base
dissociates into one or more negatively charged hydroxide (OH-) ions that can accept, or combine with, protons and one or more positive ions(cations) NaOH--> Na+ OH-
26
salts
dissociates in water into cations and anions neither of which is H+ or OH- NaCl--> Na+ Cl-
27
why are acids and bases important?
living organisms must maintain and acid base balance | H+ and OH- are very reactive
28
If chemical reactions change the [H+] and [OH-], how does the body maintain the proper pH?
buffers
29
What will the problem be for bacteria that need a certain pH to survive?
can't control environment
30
phosphate
O- O----P===O O-
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carbohydrates
Carbon, Hydrogen, Oxygen Sugars and starches Made up of (CH2O)n
32
Lipids
``` carbon, hydrogen, oxygen Fats and triglycerides Nonpolar molecules Energy storage form Structure Cell membrane—phospholipids Steroids Waxes ```
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proteins
Carbon, hydrogen, oxygen, nitrogen, and small amount of sulfur 50% dry weight of cell Building blocks are amino acids
34
Nucleic Acids
Carbon, Hydrogen, Oxygen, Nitrogen, Phosphorous 1. DNA is genetic material of all organisms and of many viruses 2. carries instruction for synthesis of RNA and proteins (controls synthesis of all moelcules in an organism)
35
making a disaccharide
Dehydration—glycosidic bond
36
complex lipids
``` Phospholipids Polar region Phosphate head Hydrophilic—water loving Nonpolar region 2 fatty acid tails Hydrophobic—water fearing Make up the cytoplasmic membrane Bacteria and Eukarya ```
37
DNA
Hydrogen bonds to hold them together Guanine and cytosine are stronger bond How much energy do you need to disrupt that? -more for higher levels of GC -bacteria in higher temperatures have more amounts of GC structure: AT/U and CG
38
prokaryote
``` No nucleus No histones No organelles Cell wall of peptidoglycan Divide by binary fission ```
39
eukaryote
``` Nucleus Histones Organelles May or may not be cell walls Divide by mitosis and maybe by meiosis ```
40
bacterial size and shape
Size: 0.2 to 2.0 μm diameter and 2 to 8 μm long Shapes: Most basic, Coccus(round), Bacillus(rods), and Spiral Unusual shapes: Star and Rectangle
41
Monomorphic
single shape | most bacteria
42
Pleomorphic
many shapes | Corynebacterium sp.
43
What is the importance of surface to volume ratio?
The important point is that the surface area to the volume ratio gets smaller as the cell gets large
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Glycocalyx
sugar coat, substance that surrounds cell
45
capsule
``` firmly attached to glycocalyx-seen in negative stain Virulence factor: Protects bacterium from phagocytosis Attachment to tissue Potential food source ```
46
slime layer
loosely attached to glycocalyx Trap nutrient Prevent dessication Motility
47
Extracellular Polymeric Substance
``` Biofilms EPS Function Attachment Food Protection** ```
48
Eukaryotic Glycocalyx
``` Carbohydrates covalently bound to proteins and lipids in membrane Function Strengthen cell Attachment Cell-to-cell recognition ```
49
flagella
``` Long appendage used for propulsion Rotates like a propeller Clockwise—usually reverse Counter clockwise—usually forward 50 μ/sec = 0.0001 mph = 37 cell length/sec ```
50
taxis
movement of bacteria due to stimuli
51
Axial Filament
Internal flagellum or endoflagellum Bundles of fibrils spiral around the cell Under the outer sheath
52
Fimbriae and Pili
Hairlike appendages used for attachment Shorter, thinner, and straighter than flagella Composed of pilin protein Gram negative bacteria
53
Pili
Longer than fimbriae and fewer in number Function DNA transfer—bacterial “sex” Motility
54
Bacterial Cell Wall Make-up
``` Peptidoglycan Sugar portion N-acetylglucosamine (NAG) N-acetylmuramic acid (NAM) Protein portion Amino acid chains on NAM Cross-linked to neighboring chain by amino acids ```
55
Function cell wall
Shape Resists osmotic pressure Protect membrane and interior from environmental change All bacteria have cell walls, except Mycoplasma
56
Why do health professionals care about cell wall?
Clinically Contributes to the ability to cause disease Site of action for antibiotics Used to differentiate bacteria
57
Gram positive Cell wall
Gram positive Peptidoglycan outside plasma membrane 20-80 nm thick Contains teichoic acid
58
Teichoic Acid
Regulates cations movement Regulates autolysins Antigenic specificity for ID Lipoteichoic acid
59
Other Features to Consider gram stains
``` Gram stains purple Acid fast bacteria Mycolic acid—thick, waxy lipid Mycobacterium Does gram staining work for Acid fast bacteria? ```
60
Gram Negative Cell Wall
``` Cell envelope Outer membrane Cell wall Periplasm Plasma membrane ```
61
Outer Membrane
``` Lipid bilayer Permeable to small molecules Porins—protein channels Not very permeable to antibiotics Which ones would it be permeable to? Contains lipopolysaccharide (LPS) ```
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Lipopolysaccharide
``` Found only in gram negative 40% of cell surface 300,000/cell Three parts O-specific side chain or O antigen Core polysaccharide Lipid A or endotoxin Embedded in cell membrane ```
63
Clinical Importance of Endotoxin
``` Weakly immunogenic Toxic at high doses (mg/kg body weight) Capable of causing fever, blood clots, and septic shock Only occurs when bacteria are dying 500,000 cases of septicemia/yr in U.S. 40% die Heat stable—pyrogenic ```
64
Cell Wall of Gram Negative
``` Thin layer of peptidoglycan (1-3 nm) Found in the periplasmic space Lots of protective enzymes Efflux pumps Gram stains pink ```
65
Factors that Destroy Cell Wall
Lysozyme Enzyme that breaks the NAM-NAG backbone Found in egg whites and tears When will lysozyme be an effective way to kill bacteria? What might be a problem? Antibiotic penicillin Prevents crosslinking from occurring Binds the enzymes that make cell wall: penicillin binding proteins Works really well on gram positive bacteria When will penicillin be an effective treatment?
66
Eukaryotic Cell Wall
``` For protection Carbohydrates Plants and algae Cellulose Fungi Chitin Glucans ```
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Cell Membrane Structure
``` Prokaryotes Phospholipid bilayer Lots of proteins Eukaryotes Phospholipid bilayer Few proteins Sterols Carbohydrates attached at surfaces ```
68
Proteins
``` Essential for bacteria Peripheral—only on one side or the other Integral—goes through the membrane Porin Transport protein Protein channel ```
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Fluid Mosaic Model
``` Phospholipids are not attached Move laterally freely Allows for transport and resistance to pressure Functions: Separate self from environment Selectively permeable Energy production in prokaryotes Attachment Cell to cell recognition in eukaryotes ```
70
Agents that Destroy Membrane
Limited use Disinfectants often disrupt membrane Polymyxin antibiotics What type of bacteria will this antibiotic be especially active against?
71
Passive Transport
No energy is required as the molecule with move with the concentration gradient Simple diffusion—small molecules like O2 Osmosis—simple diffusion of water Facilitated diffusion—simple diffusion that requires a transport protein
72
Active Transport
``` Energy is required because it is against the concentration gradient Energy from ATP Active transport Single protein is required Group translocation Multiple proteins are required Molecule is changed during transport ```
73
Bacillus anthracis(anthrax)
``` Gram positive rods Spore-forming Causes anthrax Capsule Exotoxins ```
74
Endospores
``` Produced in response to oxygen Survive in soil for decades Germinate in nutrient rich environment Hoofed livestock Humans ```
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anthrax environment and risk
Black soils rich in organics and calcium Alkaline pH Hot, dry climates ID50 for grazers ranges from 107-108
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Anthrax Infection
``` Endospores Commonly occurs in hoof stock Infected animals Hide or hair from infected animals. Most common in agricultural regions ```
77
Forms of Anthrax
Cutaneous--skin Inhalation--lungs Gastrointestinal—GI tract
78
Cutaneous anthrax
Most common (about 95%) Bacterium (spore) enters a cut or abrasion on the skin Starts as a raised itchy bump Vesicle and then a painless ulcer black necrotic (dying) area in the center eschar 20% of untreated cases = death Deaths are rare with appropriate antimicrobial therapy
79
Inhalation anthrax
``` More severe disease Mortality as high as 90% Person inhales spores Like common cold (so usually don’t act on) Progress to severe breathing problems and shock. Usually fatal Spread to lymph nodes Then to blood stream ```
80
Gastrointestinal anthrax
``` rare Consumption of contaminated meat Nausea Loss of appetite Vomiting Fever Followed by abdominal pain, vomiting of blood, and severe diarrhea Mortality 50-60% cases ```
81
treatment anthrax
``` Can be treated with antibiotics Oral fluoroquinolones Ciprofloxacin—not in children or pregnant women Doxycycline Treat early Chemoprophylaxis ```
82
Vaccine anthrax
``` Use a live vaccine for livestock Attenuated endospore vaccine Human vaccine available but only given to high risk individuals Need a booster every 6 mos Controversial ```
83
bioterrorism threat anthrax
22 people were made ill in the United States. (2001) 11 inhalation (5 died) 11 cutaneous Anthrax spores were distributed via 6 letters sent by U.S. mail to media organizations and political offices
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Successful Bioterrorist Weapon anthrax
Endospores Indestructible Carried by wind Respiratory form
85
Sexually Transmitted Disease (STD) Syphillis
Pass the bacteria from infected skin or mucous membranes (linings) - genital area, lips, mouth, or anus - to the mucous membranes or skin of a sexual partner Can be passed from mother to infant during pregnancy
86
History Syphillis
16th century names Italians called it the “Spanish disease” French called it the “English disease” and “Italian” or “Neapolitan disease” Russians called it the “Polish disease” Arabs called it the “Disease of the Christians” Now “the great imitator”
87
Causative agent syphillis
Bacterium Treponema pallidum Spirochete Axial filament Does not survive well outside of host
88
stages syphillis
``` Primary Stage Marked by the appearance of a single sore (called a chancre) - may be multiple sores Chancre lasts 3 to 6 weeks, and it heals without treatment No treatment then progresses Secondary Stage Skin rash and mucous membrane lesions rough, red, or reddish brown spots both on the palms of the hands and the bottoms of the feet Swollen lymph glands Sore throat Person most contagious in secondary stage. Latent (hidden) stage Secondary symptoms/signs disappear Infection remains in the body Damage the internal organs Tertiary Stage Neurological problems Cardiovascular problems Blindness ```
89
treatment syphillis
Easy to cure in its early stages First choice of treatment for syphilis remains penicillin Other antibiotics available Can be reinfected
90
Prevention syphillis
Abstain from sexual intercourse Long-term mutually monogamous relationship Latex condoms – correct use Not all areas covered with condom use
91
ethics syphillis
Tuskegee Syphilis Experiment 1932 and 1972 -U.S. Public Health Service conducted an experiment on 399 black men in the late stages of syphilis Never told what disease they were suffering from Doctors had no intention of curing them
92
Clostridium botulinum
``` Motile Non-contagious Botulinum toxin Most potent toxin known Neurotoxin Metalloprotease that inhibits acetylcholine release Paralysis of the motor system ```
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Botulism
A paralytic disease Botulism is Latin for botulus, meaning sausage Commonly transmitted by food poisoning
94
intoxication v infection botulism
Disease is generally caused by a protein neurotoxin, not an infection Neurotoxin in contaminated food Flaccid paralysis
95
Forms botulism
``` Food-borne botulism Infant botulism Wound botulism All forms of botulism can be fatal All forms are considered a medical emergency ```
96
Food-borne Botulism
``` Eat foods contaminated with botulism toxin Many people can become sick Canned foods From 1950-1996: 65.1% of cases due to home processed foods ```
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Symptoms botulism
``` Weakness of Muscles Blurry Vision Double Vision Droopy Eyelids Slurred Speech Dry Mouth Difficulty Swallowing Nausea and Vomiting Weak poor muscle control Eat less Often become constipated Weak cry Nausea and vomiting ```
98
Infant Botulism
Infection, not just intoxication Child ingests the endospores, but do not have a fully developed normal flora Without competition, the endospores germinate and grow producing toxin What is the number one cause of infant botulism?
99
Wound Botulism
Endospores get into wounds Majority of cases in drug use Mexican tar heroin—skin popping
100
Distribution of botulism
``` 10-30 cases annually in U.S. Infant botulism is 70% Foodborne botulism is 25% Wound botulism is 5% Foodborne outbreaks California Washington Colorado Oregon Alaska—especially in native population ```
101
Treatment botulism
Antitoxin—antibody to bind up the toxin Vomiting or enemas Wounds surgically cleaned Breathing through ventilator
102
Prevention botulism
``` Boil canned foods 10 minutes Do not eat from bulged cans No “off odor” foods No honey for children under 2 Don’t Do Drugs! ```
103
Benefits of Botulism Toxin
``` Botox Wrinkles Temporary Migraine headaches Eye muscle disorders Muscle stiffness ```
104
function of carbohydrates
1. long-term storage of chemical energy (starch, glycogen) 2. ready energy source (glucose) 3. part of backbones of nucleic acids 4. converted to amino acids 5. form cell wall 6. involved in intracellular interactions between animal cells
105
types of carbohydrates
monosaccharaides disaccharides polysaccharides
106
monomer
building blocks of macromolecules
107
function of proteins
Enzymes—lower activation energy of a reaction Transport proteins—allow substances in and out of cell Toxins and bacteriocins Movement—flagella Structure—peptidoglycan Regulation--hormones
108
peptide bond
a covalent bond formed between amino acids by dehydration synthesis reaction
109
RNA
helps form polypeptides
110
Deoxyribonucleic acid (DNA)
blueprint of cell
111
Ribonucleic acid (RNA)
important in protein production
112
ATP
energy currency of the cell
113
Gram negative cell wall
Peptidoglycan lays between outer membrane and plasma membrane Thin layer Contains lipopolysaccharide