Exam 1 Study Guide Flashcards

1
Q

How are anatomy and physiology complimentary?

A

Form dictates function

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2
Q

What are the levels of structural organization of the human body? Explain the hierarchy from the chemical level to the organismal level?

A

Chemical Level: composed of atoms that combine to form molecules. Molecules combine to form organelles.

Cellular Level is composed of many cells. Cells with similar functions combine to form tissues- epithelial, connective, muscle, and nervous.

Tissues combine to create organs, a discrete structure that carries out a specific function.
An organ must have at least 2 tissues; usually has all 4.
Organs work together to make up organ systems.
Organ systems make up the organism.

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3
Q

Define homeostasis. Identify the two organ systems that play the most important role in maintaining homeostasis. What is homeostatic control? Explain the process of homeostatic control and identify the main components of the control system.

A

Homeostasis is the maintenance of a stable internal environment despite a constantly changing external environment.
The two organ systems that play the largest role are the endocrine and nervous systems.
Control mechanisms of the body contain at least three elements that work together: receptor(s), control center, and effector(s).

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4
Q

Explain negative and positive feedback mechanisms. Provide examples of these negative and positive feedback mechanisms in the body. Identify which feedback mechanism functions in homeostatic control. Understand why negative and positive feedback mechanisms are important in the body.

A

Negative feedback mechanisms reduce the effect of the original stimulus, and are essential for maintaining homeostasis. Body temp, heart rate, BP, breathing rate and depth, and blood levels of glucose and certain ions are regulated by negative feedback mechanisms.

Positive feedback mechanisms intensify initial stimulus, leading to an enhancement of the response.
Rarely contribute to homeostasis, but blood clotting and labor contractions are regulated by such mechanisms.
May have only local effects. For example, blood clotting is accelerated in injured vessels, but does not normally spread to the entire circulation.

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5
Q

Why do we care about chemistry and biochemistry in anatomy and physiology?

A

Chemical reactions underlie all physiological processes—movement, digestion, the pumping of your heart, and even your thoughts.

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6
Q

What is an atom? Explain the structure of an atom and the two different models. What are the subatomic particles? What are their sizes, charges, and locations in the atom?

A

The planetary model of the atom is a simplified model of atomic structure depicting electrons moving around the nucleus in fixed, generally circular orbits. But we can never determine the exact location of electrons at a particular time because they jump around following unknown trajectories.

The orbital model is more useful for predicting the chemical behavior of atoms. Depicts probable regions of greatest electron density by denser shading (haze is called the electron cloud).

P+ = 1 amu 
N = 1 amu 
e- = 0 amu
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7
Q

What are the most common elements in the human body? What elements are present in sparse amounts?

A

Four elements—carbon, oxygen, hydrogen, and nitrogen—make up about 96% of body weight, and 20 others (calcium, phosphorus, potassium, sulfur, sodium, chlorine, magnesium, iodine, iron, chromium, cobalt, copper, fluorine, manganese, molybdenum, selenium, silicon, tin, vanadium, zinc) are present in the body, some in trace amounts.

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8
Q

How do atoms interact? Explain the three types of bonds, being specific about the electron interactions occurring in those bonds. Give examples of where these bonds occur.

A

An ionic bond is formed by the transfer of one or more electrons from one atom to the other. The atom that gains one or more electrons is the electron acceptor. It acquires a net negative charge and is called an anion. The atom that loses electrons is the electron donor. It acquires a net positive charge and is called a cation.

Electron sharing produces molecules in which the shared electrons occupy a single orbital common to both atoms. Molecules formed are electrically balanced and are called nonpolar molecules (because they do not have separate and poles of charge).
A molecule’s shape helps determine what other molecules or atoms it can interact with. It may also result in unequal electron pair sharing, creating a polar molecule (dipole), especially in nonsymmetrical molecules containing atoms with different electron-attracting abilities.

Hydrogen bonds form when a hydrogen atom, already covalently linked to one electronegative atom (usually nitrogen or oxygen), is attracted by another electron-hungry atom, so that a “bridge” forms between them.

Although hydrogen bonds are too weak to bind atoms together to form molecules, they are important intramolecular bonds (literally, bonds within molecules), which hold different parts of a single large molecule in a specific three-dimensional shape. Some large biological molecules, such as proteins and DNA, have numerous hydrogen bonds that help maintain and stabilize their structures.

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9
Q

What are organic molecules? What are inorganic molecules?

A

Contain carbon and are made by living things. All organic compounds are covalently bonded molecules, and many are large.
All other chemicals in the body are considered inorganic compounds. These include water, salts, and many acids and bases. Inorganic compounds are generally defined as compounds that lack carbon.
Organic and inorganic compounds are equally essential for life.

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10
Q

What are macromolecules? What are the four groups of macromolecules we covered in class? What are their monomers? What are their polymers?

A

Macromolecules are large complex molecules containing thousands of atoms.

Most macromolecules are polymers,
which are chainlike molecules made of many smaller, identical or similar subunits (monomers) by dehydration synthesis.

Only two polysaccharides are of major importance to the body: starch and glycogen. Both are polymers of glucose. Only their degree of branching differs.

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11
Q

Electronegativity and electropositivity

A

In general, small atoms with 6 or 7 valence shell electrons, such as oxygen, nitrogen, and chlorine, are electron-hungry and attract electrons very strongly, a capability called electronegativity. On the other hand, most atoms with only one or two valence shell electrons tend to be electropositive. Their electron-attracting ability is so low that they usually lose their valence shell electrons to other atoms. Potassium and sodium with one valence shell electron, are good examples of electropositive atoms.

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12
Q

Dehydration Synthesis

A

Monomers are joined together by this.
a hydrogen atom is removed from one monomer and a hydroxyl group is removed from the monomer it is to be joined with. As a covalent bond unites the monomers, a water molecule is released. This removal of a water molecule at the bond site occurs each time a monomer is added to the growing polymer chain. The opposite reaction in which molecules are degraded is called hydrolysis

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13
Q

Hydrolysis

A

describes the chemical reactions involved in the digestion of proteins and carbohydrates in the small intestine
The reaction in which molecules are degraded is called hydrolysis (water splitting). In these reactions, a water molecule is added to each bond that is broken, thereby releasing its building blocks (smaller molecules).

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14
Q

cell cycle

A

The cell is rapidly growing during G1 of interphase. During the S phase of interphase, the cell continues to grow and DNA is replicated. In G2 of interphase, the cell is making final preparations to divide. In the mitotic phase (M phase) of the cell cycle, the cell divides to produce two daughter cells.

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15
Q

gene

A

a segment of DNA that carries instructions for the production of one polypeptide chain

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16
Q

Triglycerides

A

Consist of glycerol and three fatty acids.
Major form of stored energy in the body.
Fat deposits (in subcutaneous tissue and around organs) protect and insulate body organs.

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17
Q

Phospholipid

A

A phospholipid consists of a glycerol backbone with two fatty acids, a phosphate group, and a nitrogen-containing group.

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18
Q

What are enzymes? What macromolecule are enzymes? What is their function? What is their structure? What is their mechanism of action?

A

Enzymes are biological catalysts that regulate and accelerate biochemical reactions. Enzymes accelerate biochemical reactions by reducing the activation energy needed to form bonds between reactants. Importantly, enzymes have specificity - they can only accelerate specific biochemical reactions. Additionally, they are not used up. This means that they can accelerate one biochemical reaction right after another.

Enzymes and proteins in general rely on their structure. Without their structure, they are rendered inactive. When a protein unfolds and loses its shape, this is called denaturation. This can occur due to changes in temperature (heat) or shifts in pH outside of the physiological range. Depending on how drastic the unfolding, denaturation can be reversible or irreversible.

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19
Q

What is the “energy currency” of the cell? Describe its structure and function. Explain why it is considered the energy currency of the cell.

A

The structure of ATP is a nucleoside triphosphate, consisting of a nitrogenous base (adenine), a ribose sugar, and three serially bonded phosphate groups. ATP is commonly referred to as the “energy currency” of the cell, as it provides readily releasable energy in the bond between the second and third phosphate groups.

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20
Q

What is the pH scale? What actually is the pH referring to? What pH range would be alkaline (basic)? Acidic? Neutral? How is pH written or expressed? Why is pH important?

A

pH is a measure of the concentration of hydrogen and hydroxyl ions in a solution. The pH scale extends from 0 to 14. If the concentrations of hydrogen and hydroxyl ions is equal, the pH is neutral and 7. If there are more hydrogen ions than hydroxyl ions, the solution is said to be acidic with a pH less than 7. If there are more hydroxyl ions than hydrogen ions, the solution is said to be basic with a pH greater than 7.

21
Q

What is the plasma membrane? Describe its structure in detail, including all of its constituents: membrane lipids, membrane proteins, membrane carbohydrates. Describe the functions of each membrane component. What are the functions of the membrane? What does the membrane function depend on?

A

Extracellular material includes extracellular fluid, cellular secretions, or extracellular matrix. Intracellular content includes the nucleus (control center of the cell) and the cytoplasm (intracellular fluid + organelles outside the nucleus). The plasma membrane acts as a selectively permeable barrier between the extracellular and intracellular material, allowing only certain substances into or out of the cell.

The plasma membrane is composed of membrane lipids, membrane proteins, and membrane carbohydrates. Membrane lipids include phospholipids and cholesterol (a steroid). The phospholipids make up the majority of the membrane lipids (80%) and form a fluid lipid bilayer due to the chemical properties of the phospholipid’s structure. The polar (hydrophilic) head groups in each layer orient themselves outward toward the extracellular material or intracellular material, and the nonpolar (hydrophobic) tails in each layer orient themselves inward toward one another. Polar molecules want to be by other polar molecules, and nonpolar molecules want to be by other nonpolar molecules. Therefore, the polar head groups want to be by water, the main constituent of both intracellular and extracellular fluid, and the nonpolar tails want to be by each other hiding from water.

The remaining 20% of the membrane lipids are cholesterol molecules. Cholesterol inserts itself into the lipid bilayer because it has both polar and nonpolar regions. Cholesterol is composed of four interlocking nonpolar hydrocarbon rings and a polar hydroxyl group. Therefore, cholesterol can interact with both the hydrophobic and hydrophilic regions of the lipid bilayer. Cholesterol is much stiffer than the phospholipids, providing some rigidity and stability to the plasma membrane.

Membrane carbohydrates include glycolipids (sugar + lipid) and glycoproteins (sugar + protein) which make up the glycocalyx - a fuzzy, sticky, carbohydrate-rich region on the extracellular surface of the cell. Membrane carbohydrates function in identification/recognition, adherence, and communication.

Membrane proteins insert themselves into the lipid bilayer (integral proteins) or on the surface of the lipid bilayer (peripheral proteins). Membrane proteins could be found on the extracellular or intracellular face of the plasma membrane and are constantly changing their position in the lipid bilayer. Membrane proteins have many potential functions including communication, adherence to surrounding cells or extracellular matrix material, transport, acting as enzymes, or recognition.

22
Q

What are the two types of cellular extensions? Provide a description of the cellular extensions, their structure, and their functions. Identify what cytoskeletal element is involved in its structure. Where might these cellular extensions exist in the body? Give examples.

A

Cellular extensions include microvilli or cilia. Both are plasma membrane protrusions composed of cytoskeletal proteins. Microvilli are fingerlike extensions on the cell surface composed of a cytoskeletal protein called actin. Microvilli function to increase the surface area of the cell.

Cilia are protrusions of the plasma membrane made of a cytoskeletal protein called microtubules. Cilia function to perform ciliary action, where they whip back and forth across the plasma membrane attempting to sweep substances in one direction across the plasma membrane.

23
Q

What are the three types of cell junctions? Describe each junction in detail, including its structure and function, and provide an example of where it can be found.

A

Cell junctions at the plasma membrane include tight junctions, desmosomes, or gap junctions.

Tight junctions are composed of interlocking proteins that form a tight seal between the cells. They function to prevent molecules from passing between cells.

Desmosomes are composed of cadherins, which create a sort of molecular velcro to anchor the cells together. They function to resist mechanical stress.

Gap junctions, or communicating junctions, are composed of channels called connexons that allow molecules to pass between cells as a form of communication.

24
Q

Phagocytosis

A

the process by which a cell uses its plasma membrane to engulf a large particle and, phagosome fuses with lysosome.

The cell engulfs a large particle by forming projecting pseudopods (false feet) around it and enclosing it within a membrane sac called a phagosome. The phagosome is combined with a lysosome. Undigested contents remain in the vesicle (now called a residual body) or are ejected by exocytosis. Vesicle may or may not be protein coated but has receptors capable of binding to microorganisms or solid particles.

25
Q

Receptor-mediated endocytosis

A

A means to import macromolecules from the extracellular fluid.

Extracellular substances bind to specific receptor proteins, enabling the cell to ingest and concentrate specfic substances (ligands) in protein-coated vesicles. Ligands may simply be released inside the cell, or combined with a lysosome to digest contents. Receptors are recycled to the plasma membrane in vesicles.

Specific due to receptors.

26
Q

Exocytosis

A

Secretion of neurotransmitters, hormones, or mucus.

  1. The membrane bound vesicle migrates to the plasma membrane.
  2. There, proteins at the vesicle surface (V-SNARES) bind with plasma membrane proteins (T-SNARES).
  3. The vesicle and plasma membrane fuse and a pore opens up.
  4. Vesicle contents are released to the cell exterior.
27
Q

Passive Transport Mechanisms

A

Passive transport mechanisms do not require energy input from the cell because molecules are moving down their concentration gradients due to intrinsic kinetic energy of the molecules. Therefore, we say this movement is favorable because energy doesn’t have to be provided by the cell.

Passive transport mechanisms include simple diffusion, facilitated diffusion, or osmosis. In simple diffusion, molecules are being moved across the plasma membrane directly because they are lipid soluble or small enough. In facilitated diffusion, the molecules are being moved across the plasma membrane using some type of membrane protein such as a carrier or channel. In osmosis, water molecules are moved either directly across the plasma membrane or transported through a specialized water channel called an aquaporin.

28
Q

Diffusion

A

All transport mechanisms involve some type of diffusion. Diffusion is the process by which molecules move from areas of high concentration to areas of low concentration - in other words, they move down their concentration gradient. There is no energy input needed from the cell because molecules have intrinsic kinetic energy that is driving their movement. Molecules will continue to move down their concentration gradient until the concentration is relatively equal across the plasma membrane - this is termed equilibrium.

It is important to note that only certain substances can move directly across the plasma membrane. Substances that are lipid soluble OR small enough can cross the plasma membrane directly. Lipid soluble means that the molecules being moved have hydrophobic regions so they can interact with the large hydrophobic region of the plasma membrane. Molecules small enough are capable of squeezing through that lipid bilayer without interacting too closely with the hydrophobic region of the plasma membrane, therefore it doesn’t matter if they are lipid soluble or lipid insoluble.

29
Q

Active Transport Mechanisms

A

The first class of active transport mechanisms is active transport. There are two types of active transport: (1) primary active transport and (2) secondary active transport or cotransport. In primary active transport, ATP is used directly to drive the unfavorable movement of solutes against their concentration gradients. In secondary active transport, the movement of one solute down its concentration gradient (favorable) is coupled to the movement of another solute against its concentration gradient (unfavorable). Secondary active transport uses ATP indirectly because a primary active transport mechanism is used to created the favorable gradient harnessed to drive unfavorable gradient of the co-transported molecule.

The second class of active transport mechanisms is vesicular transport. Vesicular transport is the transport of substances into/out of the cell using membrane vesicles. Because vesicular transport is a form of active transport, it still requires ATP to drive the movement of these substances against their concentration gradients. There are two types of vesicular transport: (1) exocytosis and (2) endocytosis.

30
Q

What determines what can cross the plasma membrane?

A

It is important to note that only certain substances can move directly across the plasma membrane. Substances that are lipid soluble OR small enough can cross the plasma membrane directly. Lipid soluble means that the molecules being moved have hydrophobic regions so they can interact with the large hydrophobic region of the plasma membrane. Molecules small enough are capable of squeezing through that lipid bilayer without interacting too closely with the hydrophobic region of the plasma membrane, therefore it doesn’t matter if they are lipid soluble or lipid insoluble.

31
Q

What is the cytoplasm? What are its main 3 components?

A

All cells contain the same three basic parts: a nucleus, plasma membrane, and cytoplasm. Cytoplasm is composed of all cellular material between the plasma membrane and nucleus. In other words, the cytoplasm is composed of intracellular fluid and organelles outsides the nucleus. The cytoplasm has three main components: Cytosol Cell inclusions Organelles The cytosol is everything inside the cell except the organelles. In other words, it’s the intracellular fluid with any suspended substances. Cell inclusions are chemical substances present in specific cell types - such as lipid droplets, melanin granules, or glycogen granules. Organelles are cellular machinery that carry out specific functions in the cell.

32
Q

. What are inclusions? Give three examples and explain them in detail, noting where they might be present in higher density.

A

Cell inclusions are chemical substances present in specific cell types - such as lipid droplets (adipocytes) melanin granules (skin cells) , or glycogen granules (in liver or muscle cells).

33
Q

Ribosomes

A

A ribosome is an intercellular structure made of both RNA and protein, and it is the site of protein synthesis in the cell. The ribosome reads the messenger RNA (mRNA) sequence and translates that genetic code into a specified string of amino acids, which grow into long chains that fold to form proteins.

34
Q

Rough Endoplasmic reticulum

A

The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae. Parent Terms:

35
Q

Smooth endoplasmic reticulum

A

The smooth endoplasmic reticulum (smooth ER or SER) has no ribosomes attached to it. The smooth ER is the recipient of the proteins synthesized in the rough ER. Those proteins to be exported are passed to the Golgi complex, the resident proteins are returned to the rough ER and the lysosomal proteins after phosphorylation of their mannose residues are passed to the lysosomes. Glycosylation of the glycoproteins also continues. The smooth ER is the site of synthesis of lipids, including the phospholipids. The membranes of the smooth ER also contain enzymes that catalyze a series of reactions to detoxify both lipid-soluble drugs and harmful products of metabolism. Large quantities of certain compounds such as phenobarbital cause an increase in the amount of the smooth ER.

36
Q

Golgi apparatus

A

portion of the cell that’s made up of membranes, and there’s different types of membranes. Some of them are tubules, and some of them are vesicles. And when proteins come out of the endoplasmic reticulum, they go into the Golgi for further processing. one of the functions of the Golgi is to make new vesicles out of the existing membrane of the Golgi and put into those vesicles the glycoproteins and other substances that are made in the Golgi network. And then those vesicles, filled with the Golgi products, move to the rest of the cell, usually through the cell to the plasma membrane, which is their end destination.

37
Q

3 Pathways from the Golgi Apparatus

A

(1) inside the cell to lysosomes (2) the plasma membrane (3) outside the cell.

38
Q

Lysosomes

A

a specific type of organelle that’s very acidic. So that means that it has to be protected from the rest of the inside of the cell. It’s a compartment, then, that has a membrane around it that stores the digestive enzymes that require this acid, low-pH environment. Those enzymes are called hydrolytic enzymes, and they break down large molecules into small molecules.

39
Q

Mitochondria

A

Mitochondria are membrane-bound organelles, but they’re membrane-bound with two different membranes. And that’s quite unusual for an intercellular organelle. Those membranes function in the purpose of mitochondria, which is essentially to produce energy. That energy is produced by having chemicals within the cell go through pathways, in other words, be converted. And the process of that conversion produces energy in the form of ATP, because the phosphate is a high-energy bond and provides energy for other reactions within the cell. So the mitochondria’s purpose is to produce that energy. Some different cells have different amounts of mitochondria because they need more energy. So for example, the muscle has a lot of mitochondria, the liver does too, the kidney as well, and to a certain extent, the brain, which lives off of the energy those mitochondria produce.

40
Q

Cytoskeleton

A

supports the plasma membrane and gives the cell an overall shape, but also aids in the correct positioning of organelles, provides tracks for the transport of vesicles, and (in many cell types) allows the cell to move.

not membrane bound

framework of protein filaments (3 types of rods)

structural support and organization, cell division and movement

41
Q

Microfilaments

A

Of the three types of protein fibers in the cytoskeleton, microfilaments are the narrowest. They have a diameter of about 7 nm and are made up of many linked monomers of a protein called actin, combined in a structure that resembles a double helix. Because they are made of actin monomers, microfilaments are also known as actin filaments. Actin filaments have directionality, meaning that they have two structurally different ends. Actin filaments may also serve as highways inside the cell for the transport of cargoes, including protein-containing vesicles and even organelles. These cargoes are carried by individual myosin motors, which “walk” along actin filament bundles 1 1 start superscript, 1, end superscript. Actin filaments can assemble and disassemble quickly, and this property allows them to play an important role in cell motility (movement), such as the crawling of a white blood cell in your immune system. Finally, actin filaments play key structural roles in the cell. In most animal cells, a network of actin filaments is found in the region of cytoplasm at the very edge of the cell. This network, which is linked to the plasma membrane by special connector proteins, gives the cell shape and structure.

42
Q

Intermediate filaments

A

Intermediate filaments are a type of cytoskeletal element made of multiple strands of fibrous proteins wound together. As their name suggests, intermediate filaments have an average diameter of 8 to 10 nm, in between that of microfilaments and microtubules. Intermediate filaments come in a number of different varieties, each one made up of a different type of protein. One protein that forms intermediate filaments is keratin, a fibrous protein found in hair, nails, and skin. For instance, you may have seen shampoo ads that claim to smooth the keratin in your hair! Unlike actin filaments, which can grow and disassemble quickly, intermediate filaments are more permanent and play an essentially structural role in the cell. They are specialized to bear tension, and their jobs include maintaining the shape of the cell and anchoring the nucleus and other organelles in place.

43
Q

Microtubules

A

Despite the “micro” in their name, microtubules are the largest of the three types of cytoskeletal fibers, with a diameter of about 25 nm. A microtubule is made up of tubulin proteins arranged to form a hollow, straw-like tube, and each tubulin protein consists of two subunits, α-tubulin and β-tubulin. Microtubules, like actin filaments, are dynamic structures: they can grow and shrink quickly by the addition or removal of tubulin proteins. Also similar to actin filaments, microtubules have directionality, meaning that they have two ends that are structurally different from one another. In a cell, microtubules play an important structural role, helping the cell resist compression forces. they provide tracks for motor proteins called kinesins and dyneins, which transport vesicles and other cargoes around the interior of the cell. During cell division, microtubules assemble into a structure called the spindle, which pulls the chromosomes apart.

44
Q

Pinocytosis

A

Fluid engulfed

The cell gulps a drop of extracellular fluid containing solutes into tiny vesicvles to sample it. No receptors are used, so the process is nonspecific. Most vesicles are protein coated.

45
Q

Centrosome with Centrioles

A

Centrosome has no membrane

Centrioles found within centrosome

Microtubule organizing center

Always has a pair within a centrosome

Mitotic spindle formation

46
Q

Central Dogma

A

The central dogma of molecular biology is a theory stating that genetic information flows only in one direction, from DNA, to RNA, to protein, or RNA directly to protein.

DNA → RNA → Protein, or DNA to RNA to Protein

Transcription and Translation

47
Q

Transcription

A

the process of making an RNA copy of a gene’s DNA sequence. This copy, called messenger RNA (mRNA), carries the gene’s protein information encoded in DNA. In humans and other complex organisms, mRNA moves from the cell nucleus to the cell cytoplasm (watery interior), where it is used for synthesizing the encoded protein.

48
Q

Translation

A

the process through which information encoded in messenger RNA (mRNA) directs the addition of amino acids during protein synthesis. Translation takes place on ribosomes in the cell cytoplasm, where mRNA is read and translated into the string of amino acid chains that make up the synthesized protein.

49
Q

Nuclear components

A

Chromosomes are compact chromatin strands

Has chromatin: DNA and associated regulatory proteins

Nucleolus: assemble ribosomal subunits.