Exam 1 Flashcards
cryptococcus diagnosis
india ink stain, antigen test
fungal pneumonia in immunocompromised patients
pneumocystis jirovecii or cryptococcus
pneumocystis diagnosis
special stains, PCR
pneumocystis chest xray
diffuse bilateral ground glass opacities
when to initiate pneumocystis prophylaxis
CD4<200
dermatophytes
cluster of superficial skin fungi that cause tinea infections
dermatophytes colonize ____
keratinized stratum corneum
how long to take meds for onychomycosis
3 months
non-dermatophyte cutaneous mold
malassezia furfur
tinea versicolor causative agent
malassezia furfur
tinea versicolor diagnosis
“spaghetti and meatballs” on KOH prep
subcutaneous mold
sporotrichosis
sporotrichosis causative agent
sporothrix schenckii
sporotrichosis mechanism
found in soil, follows traumatic implantation
sporotrichosis presentation
chronic, localized skin infection - nodular ulcerated lesions
what is associated with “fungus ball” in sinuses
rhizopus, mucor
where can zygomycosis manifest
rhino/facial/cranial, lungs, GI tract
complications of zygomycosis
emboli, tissue necrosis
aspergillus aka
black mold
aspergillus sites
body cavities, ear canal, invasive lung disease
dimorphic fungi
blastomyces, histoplasma, coccidioides
where is blastomyces endemic
mississippi and Ohio river valleys, great lakes region
extrapulmonary manifestations of blastomyces
skin, osteomyelitis, CNS, GU tract
where is histoplasma endemic
southeastern US, mid-Atlantic states
extrapulmonary manifestations of histoplasma
bone marrow, blood, CNS, lymph nodes
coccidioides endemic
Southwestern US
extrapulmonary manifestations of coccidioides
erythema nodosum/multiforme, meningitis, bone, arthralgia, fatigue, fever, myalgia, headache, night sweats, weight loss
culture of coccidioides
white fuzzy growth on blood auger - don’t open the plate
pulmonary manifestations of coccidioides
chronic cough, dyspnea, hemoptysis, pleuritic chest pain
coccidioides aka
valley fever
coccidioides diagnosis consideration
TB mimic
fungal infection chest x-ray appearance
multiple small nodules
fungal infection diagnosis considerations
require selective culture media for 21 days, special stains, special testing
special testing for aspergillus
EIA test
special testing for endemic mycoses
immunodiffusion
immunodiffusion
IgM antibodies to endemic mycoses
other special test for fungi
complement fixation
non-systemic fungal treatment
Imidazoles
imidazoles examples
ketoconazole, miconazole, clotrimazole
systemic fungal treatment
triazoles
triazoles examples
fluconazole, itraconazole, voriconazole, posaconazole
which triazoles are PO only
itraconazole, posaconazole
which triazoles are IV/PO
fluconazole, voriconazole
which triazoles are for candida
fluconazole
which triazoles are for aspergillus
itraconazole, voriconazole
which triazoles are for dimorphic fungi
fluconazole
what is posaconazole used for
other invasive molds
cryptococcus treatment
amphotericin IV plus flucytosine PO
yeasts on skin/mouth treatment
nystatin
dermatophyte treatments 2nd line
terbinafine topical, griseofulvan PO
pneumocystis treatment
PO Bactrim
terbinafine tx considerations
monitor LFTs, lengthy course of treatment
antifungals are metabolized by ___
liver
which antifungal has black box warning for cardiomyopathy
itraconazole
how to avoid some amphotericin side effects
premedicate with antihistamines
normal skin flora
staph aureus, staph epidermitis, strep pyogenes, p. acnes, candida albicans
normal nasopharynx flora
strep pneumonia, h. influenzae, moraxella catarrhalis
normal mouth flora
strep viridans, actinomyces, candida albicans
normal pharynx flora
strep pyogenes, kingella kingae (peds)
normal GI flora
enterobacteriacea (e coli, klebsiella, enterobacter), enterococcus, candida
normal vaginal flora
strep agalactiae, actinomyces, gardnerella vaginalis, candida albicans
mutualism
both the host and microbe benefit
commensalism
one partner of relationship benefits (usually microbe) and the other partner (usually the host) is neither harmed nor benefitted
parasitic relationship
the microbe benefits at the expense of the host
pathogenic relationship
the microbe causes damage to the host
opportunistic pathogens definition
only cause disease in those with a compromised immune defense
opportunistic pathogens due to T-cell immune compromise
pneumocystis pneumonia, cytomegalovirus colitis
opportunistic pathogen due to patients receiving broad-spectrum abx
c diff colitis
opportunistic pathogen in patients with intravenous catheters
staph epidermidis bacteremia
frank pathogens definition
always associated with disease
examples of frank pathogens
neisseria, shigella, HIV
facultative pathogens definition
can be either normal flora or pathogenic
majority of organisms that cause disease are ___
facultative
examples of facultative pathogens
staph aureus, e coli
gram positive are usually what morphology
cocci or bacillus
obligate aerobes
mycoplasma tuberculosis, pseudomonas, nocardia, bacillus
obligate anaerobes
bacteriodes fragilis, fusobacterium, clostridia, actinomyces, peptostreptococcus
gram positive bacteria characteristics
thick peptidoglycan layer that holds the crystal violet stain
gram negative bacteria characteristics
thin peptidoglycan layer that decolorizes and then holds the safranin (counterstain)
common causes of neonatal meningitis
e coli, group B strep, listeria
common causes of infant/toddler meningitis
strep pneumo, neisseria, hib, group B strep, e coli
common causes of teen/young adult meningitis
neisseria, strep pneumo
common causes of adults >50 meningitis
strep pneumo, neisseria, Hib, group B strep, listeria
treatment for neonatal meningitis
ceftriaxone, ampicillin
treatment for infant/pediatric meningitis
ceftriaxone, vanc
treatment for older adults meningitis
ceftriaxone, vanc, ampicillin
bacteria not characterized by gram stain
mycobacteria, nocardia, mycoplasma, chlamydia, rickettsia, treponema
why can’t mycobacteria/nocardia be characterized by gram stain
mycolic acids and lipids in cell wall don’t allow stain to penetrate completely
why can’t mycoplasma be characterized by gram stain
no cell wall
why can’t chlamydia/rickettsia be characterized by gram stain
obligate intracellular organisms
why can’t treponema be characterized by gram stain
too small
what mechanisms are used by extracellular bacteria to evade an immune response
formation of biofilms, blockade of opsonization/phagocytosis by binding proteins, production of toxins to escape phagosomes, prevention of phagosome-lysosome fusion, induced uptake by non-phagocytic cells
gram negative rods lactose fermenters
e coli, klebsiella enterobacter
gram negative rods non-lactose fermenter
pseudomonas, e. coli, proteus, salmonella, shigella
gram positive cocci catalase positive
staph aureus, coagulase-negative staph
gram positive cocci catalase negative beta hemolytic
strep pyogenes, strep agalactiae
gram positive cocci catalase negative alpha/non hemolytic
strep pneumo, strep viridans, enterococcus
test for mycobacteria
acid fast
test for nocardia
modified acid fast
test for chlamydia
PCR
test for rickettsia
antibody titer
test for treponema
dark-field microscopy
bronchitis is usually due to ____
respiratory viruses
bronchiolitis pathogen
RSV
bronchiolitis diagnosis
rapid antigen or PCR testing of nasopharyngeal swab
bronchiolitis risk factors
infants, especially premature, age 6 months or younger. And children with congenital heart or chronic lung disease
bronchiolitis recommended therapy
maintain nutrition, hydration, and oxygen saturation over 90%
croup pathogen
parainfluenza virus
croup ssx
barking cough, stridor, labored/noisy breathing
croup prognosis
self-limiting in 3-5 days
croup treatment
keep child calm, using humidified or cool air. Signle dexamethasone shot can be given. Racemic epi only given in severe cases.
organisms causing acute pneumonia
strep pneumo, haemophilus influenzae, moraxella catarrhalis, legionalla
organisms causing atypical pneumonia
mycoplasma pneumoniae, chlamydia pneumoniae, SARS-COVID19, flu A/B, adenovirus, RSV, rhinovirus
legionella morphology
gram negative bacilli
legionnaires infectivity
doesn’t spread person to person, but spreads through mist, usually associated with community outbreaks
risk factors for legionnaires
> 50, weak immune systems, chronic lung disease, heavy tobacco use
legionnaires presentation
may be asymptomatic or cough/fever/chills, SOB, myalgias, headaches, diarrhea
most common pathogen for aseptic meningitis
enterovirus
3 forms of fungi
yeasts, molds, dimorphic
most common yeast species
candida albicans
candida albicans diagnosis
budding yeast with pseudohyphae visible on gram stain
candida albicans skin infection ssx
deep red itchy rash with satellite lesions
“notable yeasts”
candida albicans, cryptococcus, pneumocystis
which yeast causes pneumonia and meningitis in immunocompromised patients
cryptococcus
cryptococcus yeast characteristics
encapsulated budding yeast visible with india ink stain
cutaneous molds
dermatophytes, malassezia furfur
types of dermatophytes
trycophytan, microsporum, epidermophytan
malassezia furfur causes what conditions
tinea versicolor, seborrheic dermatitis
tinea versicolor ssx
hypo or hyperpigmentation of skin
what are the invasive molds
rhizopus, mucor, aspergillus
causative agents of zygomycosis
rhizopus, mucor
which mold causes emboli and necrosis of tissue
zygomycosis
where does zygomycosis invade
rhino-facial-cranial area, lungs, GI tract
black mold
aspergillus
where does aspergillus colonize
body cavities, ear canal, lungs
ingestion of aspergillus
can contaminate foods and form toxins
side effects of triazoles
GI intolerance, hepatotoxicity due to effects on CYP450, rash, QT prolongation
side effects of amphotericin B
rigors, fever, chills, hypoxia, dyspnea, local phlebitis, nephrotoxicity, muscle/joint pain
mycoplasma pneumoniae aka
“walking pneumonia”
mycoplasma pneumoniae diagnosis consideration
bacterium is very small and cannot be gram stained or grown with traditional cultures - can use cold agglutinin
2nd most common cause of CAP
mycoplasma pneumoniae
mycoplasma pneumoniae presentation
mild ssx, persistent cough for weeks to months
who does mycoplasma pneumoniae usually affect
people under 40 and those in crowded settings
mycoplasma pneumoniae transmission
spreads via droplets
mycoplasma pneumoniae chest x ray
may be normal
mycoplasma pneumoniae treatment
normally self-limiting but may use azithromycin or doxy
chlamydia pneumoniae type of bacterium
obligate intracellular
chlamydia pneumoniae transmission
respiratory droplets
chlamydia pneumoniae ssx
similar to m. pneumoniae mild with gradual onset and prolonged cough of 2-6 weeks
chlamydia pneumoniae diagnosis
PCR (usually not performed), CXR may be normal
chlamydia pneumoniae treatment
usually self-limiting but may use azithromycin or doxy
general ssx of atypical pneumonias
`subacute presentation with milder ssx, moderate sputum production, no consolidation
chest x-ray atypical pneumonia
may be normal or may see diffuse interstitial infiltrates
atypical pneumonia wbc
moderate elevation
nosocomial pneumonia pathogens
MRSA, pseudomonas, enterobacteriaceae (e coli, acinetobacter)
aspiration pneumonia pathogens
peptostreptococcus, fusobacterium, klebsiella
pathogen associated with secondary bacterial pneumonia after influenza infection
staph aureus
pathogens associated with lung abscess and necrotizing pneumonia
oral anaerobes, staph aureus, strep pneumo, klebsiella
pathogens associated with chronic pneumonia
nocardia, actinomyces, TB, non-TB mycobacteria, endemic mycoses
causes of neonatal pneumonia
group B strep, e.coli
causes of pneumonia specific to elderly
gram negative bacilli
what does rust-colored sputum suggest
strep pneumo
antivirals for pneumonia due to influenza
oseltamivir, zanamivir