Eukaryotic Cells Flashcards
Function of the nucleus?
contain and protect DNA, transcription, partial assembly of ribosomes
Function of mitochondria?
produce ATP via the Krebs cycle and oxidative phophorylation
Function of ribosomes?
synthesize proteins
Function of rough ER?
location of synthesis/modification of secretory, membrane bound, and organelle proteins
Function of smooth ER?
detoxification and glycogen breakdown in liver, steroid synthesis in gonads
Function of golgi apparatus?
modification and sorting of protein, some synthesis
Function of lysosomes?
contain acid hydrolases which digest various substances
responsible for degradation of biological macromolecules by hydrolysis
Function of peroxisomes?
metabolize lipids and toxins using H2O
The nucleus contains the genome surrounded by a ______ ______.
nuclear envelope (not accessible to the cytoplasm)
In Eukaryotes, replication, transcription, and splicing occur in the ______. Translation occurs in the _______.
Nucleus
Cytoplasm
Yeast have _____ chromosomes, humans have _____.
4
23
Centromeres?
structure near the middle of eukaryotic chromosomes to which the fibers of the mitotic spindle attach during cell division
Telomeres?
have large numbers of repeats of a specific DNA sequence that help maintain the ends of the linear chromosomes during replication (enzyme: telomerase)
Locus?
specific location on the chromosome that a gene is located
Heterochromatin?
regions of densely packed chromatin on a chromosome where genes are inaccessible and turned off
Euchromatin?
loosely packed chromatin on a chromosome that allow genes to be activated
If a retrovirus inserts is genome into regions of heterochromatin and nowhere else, how is this likely to affect the infection process?
the retroviral genes will not be expressed very frequently, the virus will remain as a provirus until a change happens
Role of the nuclear matrix?
support and provide overall structure
regulating gene expression
Nucleolus function?
functions as a ribosome factory, contains loops of DNA, RNA polymerases, rRNA, and protein components of the ribosome (no membrane separating it from the nucleus)
The nucleolus is larger in cells that do what?
producing large amounts of proteins due to the increased synthesis of ribosomes
What role do the loops of DNA in the nucleolus play?
the DNA serves as a template for rRNA production RNA pol
Where do the protein components of the ribosome come from during rRNA production?
they are transported into the nucleus from the cytoplasm because proteins are translated outside the nucleus
Does the ribosome finish assembly in the nucleus?
no it remains partially assembled and inactive until it gets to the cytoplasm, this is to prevent translation of hnRNA
What is the nuclear membrane?
membrane that separates the nucleus from the cytoplasm composed of two lipid bilayers
What is the space between the inner and outer nuclear membranes contiguous with?
ER lumen, isolated from the cytoplasm
What size of molecule can diffuse through nuclear pores?
molecules smaller than 60 kilodaltons, including small proteins
How can larger proteins get inside the nucleus?
they need to contain a sequence called the nuclear localization sequence which are translated on cytoplasmic ribosomes and then imported into the nucleus by a specific transport mechanism
Where is the site of oxidative phosphorylation?
mitochondria
What is the interior of the mitochondria called?
matrix
What does the matrix contain that is important to cell respiration?
pyruvate dehydrogenase and enzymes for the Krebs cycle
The inner membrane of the mitochondria is the location for what?
electron transport chain and ATP synthase
site for the proton gradient used to drive ATP synthesis
The inner membrane of the mitochondria is folded into what?
cristae
The inner of the mitochondria is impermeable to what?
free diffusion of polar substances like protons
The outer membrane of the mitochondria is smooth and allows diffusion of what?
has large pores that allow diffusion of small molecules
ATP produced in the mitochondria goes where?
transported into the cytoplasm to drive a great variety of cell processes
Why is the inner membrane folded into cristae?
to increase surface area of the inner membrane in order to increase electron transport and ATP synthesis
Are the enzymes of glycolysis found in the matrix?
no in the cytoplasm
How does pyruvate get into the matrix where pyruvate dehydrogenase is located?
transported through the membrane by a specific protein in the membrane
Mitochondria possesses their own _____.
genome
What is the mitochondria genome like?
smaller than the cell genome and consists of single circular DNA molecule
What does the mitochondria genome code for?
rRNA, tRNA, and several proteins including some components of the electron transport chain and parts of the ATP synthase complex (most are coded by nuclear genes)
T/F
Mitochondria use the same system of transcription and translation as the nucleus does.
False
they have their own
What is the mitochondria endosymbiotic theory?
originated as independent unicellular organisms living within larger cells
What bacteria do mitochondria resemble?
Gram negative bacteria
What difficulty may be encountered in translation of a mitochondrial gene moved to the nucleus?
coding system of cellular genome is different from that of the mitochondrial genome
Mitochondria are inherited _______.
maternally
Why is the mitochondria inherited maternally?
the cytoplasm of the egg becomes the cytoplasm of the zygote, sperm only contributes nuclear genes
If a woman has a disease caused by an abnormality in her mitochondrial genome, what are the chances her children will have the disease?
100%
Why is the rough ER called rough?
large number of ribosomes bound to its surface
The rough ER is the site for what?
protein synthesis for proteins targeted to enter the secretory pathway, directs protein traffic to different parts of the cell
The smooth ER can contain enzymes for what?
involved in steroid hormone biosynthesis (gonads) or in the degradation of environmental toxins (liver)
What are the two sites of protein synthesis in Euk cells?
ribosomes free in cytoplasm
ribosomes in rough ER
Where do proteins translated by ribosomes in the cytoplasm end up?
peroxisomes, mitochondria, nucleus, cytoplasm
Where do proteins translated by ribosomes on the rough ER end up?
- secreted into extracellular environment
- integral plasma membrane proteins
- membrane or interior of the ER, Golgi, or lysosomes
The ER, Golgi, lysosomes, and the extracellular environment are essentially _______.
contiguous
When a protein ends up in the ER lumen, does it ever touch the cytoplasm before leaving the cell?
no, it is transported on vessicles through the golgi and is let outside the cell by exocytosis
What determines whether a protein will be translated on the rough ER?
the sequence of the protein itself, signal sequence at the N-terminus
What recognizes the signal sequence in proteins?
signal recognition particle (SRP), which binds to the ribosome
The mRNA for a secreted protein encodes a longer protein than is actually observed in the cell exterior. why?
the signal sequence of the protein was removed in the rough ER
the only way a protein can be smaller from its mRNA would be if some post translational modification happened
What are transmembrane domains?
sections of integral membrane proteins of hydrophobic amino acid residues that pass through lipid bilayer membranes
T/F
Transmembrane domains are translated and transported the same way as secreted protein.
true
from ER to golgi to plasma membrane but they are used in the membrane, not secreted
For a protein in the plasma membrane, does the portion of the protein in the ER lumen end up facing the cytoplasm or the cell exterior?
cell exterior
Glycosylation? where does it occur?
addition of saccharides to proteins
usually occurs in the golgi, but some occurs in the rough ER
What is the default target for proteins that go through secretory paths?
plasma membrane
What is needed if a protein going through the secretory path needs to end up somewhere other than the plasma membrane?
targeting signal
What is needed if a protein that is made in the cytoplasm needs to be sent to an organelle that is not part of the secretory path?
localization signal
for more info check out page 146
MCAT bio book
Disulfide bridges are found in extracellular proteins because the cytoplasm is a reducing environment that changes cysteine to two cysteines, would it make sense that disulfide bridges are formed in the ER lumen?
yes because the ER lumen is contiguous with the extracellular environment
Three functions of the Golgi Apparatus?
- modification of proteins made in the Rough ER, especially the modification of oligosaccharide chains
- sorting and sending proteins to their correct destinations
- synthesizes certain macromolecules (polysaccharides) to be secreted
The vesicle traffic to and from the Golgi is mostly ________. (direction?)
unidirectional
Retrograde traffic?
proteins that are supposed to be in the ER escape and must be returned to ER from the Golgi (example of traffic not being unidirectional in Golgi)
Part of the Golgi nearest the rough ER is the ____ stack, the part farthest from the rough ER is the ___ stack.
cis
Medial is in the middle
trans
If vesicle fusion with the Cis Golgi was inhibited, could plasma membrane proteins reach the surface?
no, it must follow a track (ER to Cis to Medial to Trans to cell surface)
Constitutive secretory pathway in golgi?
proteins sent in vesicles from the golgi immediately to the cell surface continuously and unregulated
Regulated secretory pathway in golgi?
specialized secretory cells store proteins in vesicles and release them only at certain times usually in response to a change (ex. pancreatic cells, B cells)
Where are lysosome proteins made, modified, and released?
made- rough ER
modified- Golgi
released- trans Golgi
Autophagy?
organelles such as mitochondria that have been damaged or are no longer functional are degraded in lysosomes (self eating)
Phagocytosis?
large matter merge with lysosomes which degrade it (ex. macrophages engulf bacteria or viruses)
Crinophagy?
lysosomal digestion of unneeded (excess) secretory products
What is the enzyme responsible for degradation in lysosomes?
acid hydrolases
What is the pH of the cytoplasm and lysosomes?
cyto- 7.4
lyso- 5
Can the cell be destroyed in one lysosome ruptures?
no because the acid can be diluted by the cytoplasm, but if many rupture the cell can be destroyed
What is the byproduct of enzymes in the peroxisomes? what is it used for?
H2O2
- essential for lipid breakdown
- in liver, essential for detox of drugs and chemicals
Even though H2O2 is a dangerous chemical, how do peroxisomes make it not harm the body?
contain an enzyme called catalase which converts it to H2O + O2 which protects against peroxides or free radicals
What are the three most common lipids in Euk membranes?
phospholipids (most)
glycolipids
cholesterol
What is a distinct feature about phospholipids and glycolipids?
they are hydrophobic and hydrophilic