Epigenetics of Heart Failure Flashcards

1
Q

do cardiac myocytes grow?

A

no they are post mitotic

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2
Q

what are diseases that causes cardiac myocytes to hypertrophy?

A

1) HTN
2) heart attack
3) genetic mutation

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3
Q

PRE-CLINICAL MODEL OF CARDIAC HYPERTROPHY

A

1) suture around aorta incr P overload on LV for 3-4 weeks

2) add drugs to test in vivo

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4
Q

possible drug used for HF in mouse models

A

Artesunate (anti-malarial)

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5
Q

how do you measure systolic fxn in mouse model

A

use ultrasound

and measure hypertrophy (stain myocytes and quantify cell surface area)

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6
Q

what is E/A ratio

A

E = early phase = passive movement of blood from LA –> LV

A = active movement and requires atria to contract for leftover blood

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7
Q

how does E/A ratio change in diastolic HF?

A

decrease E/A ratio (LV stiff and less compliant)

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8
Q

how to study cardiac hypertrophy in petri dish

A

1) take heart of neonatal mice

2) mince/digest and purify cardiac myocytes
to remove fibroblast/endo cells

3) can stain with antibodies (ex: BNP)
4) culture cells on plate and quantify cell area and amount of BNP

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9
Q

hallmarks for cardiac hypertrophy

A

1) new protein synthesis
2) sarcomere assembly
3) gene expression

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10
Q

define gene transcription

A

template strand of DNA used by RNA polymerase to make RNA copy

–> indiv nucleotides link

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11
Q

define enhancers

A

specific DNA sequence control whether gene on/off

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12
Q

at gene level how are different structures (cardiac vs. skeletal muscle formed)

A

diff core promotor/enhancers on whether gene expressed

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13
Q

define chromatin

A

DNA wrapped on histone (compact)

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14
Q

can RNAP reach enhancer sequence on chromatin

A

NO because RNAP 2 is too big to target enhancer sequence

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15
Q

define epigenetics

A

Mechanisms for Altering

Gene Transcription Without Changing the Underlying DNA Nucleotide Sequence

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16
Q

ARE epigenetics based on mutations?

A

NO

CHEMICAL MODIFICATIONS TO NUCLEOTIDES/HISTONES
DETERMINE WHETHER GENE TRANSCRIBED OR NOT

17
Q

DEFINE epigenetic marks

A

modifications of histole tails (mainly Lys) with acetyl and methyl

18
Q

what are sites of reversible post translational modification

A

histone tails

19
Q

most common histone tail modified?

A

lysine

20
Q

define chromatin immunoprecepitation

A

1) take cells, fix chromatin with fixing agent
2) isolate chromatin (DNA + protein together)
3) fragment chromatin into small pieces

4) immunoprecipitate specific amino acid using
antibody that recognizes epitope

5) attach antibody to bead
6) mix with chromatin and precipitate
7) PCR recog specific locus for p53 promotor

21
Q

define histone code

A

each modification creates code (docking site) read by proteins

22
Q

how does histone code determine whether gene transcribed?

A

ex: bromo protein recog modification of amino acid

bromo interacts with other proteins to determine whether RNAP 2 interacts

23
Q

acetylation activating or deactivating

A

activating

unwinds DNA

24
Q

deacetylation activating or deactivating

A

deactivating

makes DNA more tight wound around DNA

25
Q

Ways to study protein function (2 ways)

A

1) Gain of fxn = transgenic overexpression

2) Loss of fxn = genetic knockout or chemical inhibition

26
Q

ex of transgenic overexpression

A

overexpress proteins in heart and see if affect disease

27
Q

which hdac important in decreasing heart failure

A

HDAC9 overexpression blocks cardiomyocyte hypertrophy

HDAC9 knockdown stim cardiomyocyte hypertrophy (using siRNA to knockout)

28
Q

HDAC9 overexpression ___

A

blocks cardiomyocyte hypertrophy

29
Q

HDAC9 knockdown ____

A

stim cardiomyocyte hypertrophy (using siRNA to knockout)