Enzymes Flashcards

1
Q

what are enzymes?

A
  • biological catalysts with specific tertiary structures, allowing their active site to bind to specific substrates
  • not used up and lower activation energy of reactions
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2
Q

what does the lock and key model describe

A

describes the substrate being perfectly complementary to the active site.

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3
Q

what does the lock and key model not explain

A

how the ES complex is stabilised

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4
Q

what does the induced fit model describe

A

it describes hoe the active site changes shape to add a strain to the substrate, reducing the activation energy of the reaction

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5
Q

what are extracellular enzymes

A

enzymes produced inside cells but secreted out of cell and act outside of cell

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6
Q

examples of extracellular enzymes

A

trypsin and amylase

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7
Q

what are intracellular enzymes

A

enzymes produced in cells that act in cells

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8
Q

what are catabolic reactions

A

large molecules broken down into smaller ones releasing energy

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9
Q

what are anabolic reactions

A

large molecules made from smaller ones using energy

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10
Q

what’s hydrogen peroxide

A
  • harmful by-product of many metabolic processes
  • rapidly broken down to oxygen and water by intracellular enzyme catalase
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11
Q

action of amylase

A
  • catalyses hydrolysis of starch into maltose
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12
Q

action of trypsin

A
  • catalyses the breakdown of peptide bonds, breaking down polypeptides into smaller ones
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13
Q

where is trypsin made and where does it act

A
  • produced in pancreas
  • acts in small intestine
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14
Q

where is amylase made and where does it act

A
  • made in the salivary glands
  • acts in the mouth
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15
Q

what’s enzyme activity limited by

A

rate of successful collisions with substrates and by shape of active site

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16
Q

what effect does increasing temp have on enzyme activity

A
  • kinetic energy of the molecules increases, increasing successful collisions
  • above the optimum temperature, bonds break and tertiary structure is denatured
  • shape of active site changes so substrate no longer fits
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17
Q

what effects does change in pH away from optimum have on enzyme activity

A
  • alters the charges of amino acids as well as the ionic and hydrogen bonds, altering the tertiary structure and denaturing the enzyme
  • shape of active site changes so substrate no longer fits
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18
Q

what does the temp coefficient show

A

the increase in ror when temp increases by 10C

19
Q

equation for temp coefficient

A

Q10 = ror at (T+10C) / ror at TC

20
Q

effect of enzyme concentration of enzyme activity

A
  • as conc of enzyme increases so does the rate as its more likely that a substrate molecule collides successfully with with active site and form ESC
  • ror increases until substrate conc becomes the limiting factor so adding more enzyme has no effect
21
Q

effect of substrate concentration of enzyme activity

A
  • as substrate conc rises form 0, ESC form faster and rate increases as more substrate means that successful collision between enzyme and substrate is more likely
  • eventually, all active sites will be saturated and rate plateaus as all active sites are are full
  • rate will decrease over time if no more substrate is added
22
Q

what are enzyme inhibitors

A

molecules that affect the way substrate and enzymes interact and affect product turnover

23
Q

what are competitive inhibitors

A
  • have similar shape to substrate and compete with it for the active site. Higher substrate conc will overcome this
24
Q

what are non-competitive inhibitors

A
  • bind to the allosteric site on enzymes and alter the shape of the active site, reducing maximum ror
25
what bonds so reversible inhibitors form with enzyme
- weak ionic or H bonds
26
what bonds so reversible inhibitors form with enzyme
- strong covalent bonds
27
what are cofactors
- non-protein substance that binds to enzyme that allows it to function - aren't used up in reactions and don't change
28
what are coenzymes
organic cofactors
29
what's a prosthetic group
cofactor that is tightly and permanently bound to enzyme
30
cofactor for amylase
Cl-
31
what are sources of coenzymes
vitamins
32
cofactor/prosthetic group for carbonic anhydrase
Zn2+
33
role of carbonic anhydrase
catalyses the production of carbonic acid from H2O and CO2 in RBCs
34
medicinal drugs that act as enzyme inhibitors
- penicllin - antibiotics
35
how do antiviral drugs act as enzyme inhibitors
- reverse transcriptase inhibit the enzyme reverse transcriptase, which catalyses the replication of viral DNA. This prevents the virus from replicating
36
how do antibiotics act as enzyme inhibitors
- penicillin inhibits the enzyme transpeptidase, which catalyses the the formation of proteins in bacterial cell walls. This weakens it a prevents regulation of osmotic pressure so cell bursts and dies
37
metabolic poisons that act as enzyme inhibitors
- cyanide - malonate - arsenic
38
how does arsenic act as an enzyme inhibitor
inhibits pyruvate dehydrogenase, another enzyme that catalyses respiration reactions
39
how does malonate act as an enzyme inhibitor
inhibits succinate dehydrogenase which catalyses respiration reactions
40
how does cyanide act as an enzyme inhibitor
irreversible inhibitor of cytochrome c oxidase, an enzyme that catalyses respiration reactions. cells that can't respire die.
41
what's a metabolic pathway
series of connected metabolic reactions. Product of first reaction takes part in second reaction and so on. Each reaction is catalysed by a different enzyme
42
what's end-product inhibition
- where final product can provide negative feedback on the reactions that form them by inhibiting enzymes earlier on in the metabolic pathway - when level of product starts to drop, there will be less inhibition so more product is formed and vice versa
43
why are some enzymes produced as inactive precursor molecules in metabolic pathways
- to prevent damage being caused to cell (like protease that may break down proteins in the cell) - once part of precursor molecule that inhibits enzyme is removed, enzyme becomes active
44
what does enzyme availability depend on
balance of synthesis and degredation