DNA Replication Flashcards

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1
Q

Step 1 of DNA Replication

A

DNA must unwind to expose a single stranded template

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2
Q

What does helicase do?

A
  • Unzips and unwinds the double helix
  • Breaks hydrogen bonds
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3
Q

What enzymes are used in step 1 of DNA replication?

A
  • Helicase
  • Toposiomerase (gyrase)
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4
Q

What does topoisomerase (gyrase) do?

A
  • Detangler
  • Prevents supercoils by nicking and resealing DNA
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5
Q

Step 2 of DNA Replication

A

DNA must be held open, not to reform a coil

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6
Q

What do Single Stranded Binding Proteins do?

A
  • Bind to the uncoiled DNA and keep it open
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7
Q

Step 3 of DNA Replication

A

A primer must be created before DNA synthesis can occur

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8
Q

What is a primer?

A
  • Short sequence of RNA, complementary to template
  • Provides 3’ end where DNA synthesis can begin
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9
Q

What is primase?

A

Enzyme that synthesizes RNA primer

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10
Q

What is RNA polymerase?

A
  • Synthesizes primers on leading strand
  • Type of RNA polymerase
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11
Q

Leading strand

A
  • New strand that is synthesized continuously
  • Synthesized towards replication fork
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12
Q

Lagging Strand

A
  • Synthesized in short fragments called Okazaki fragments which are later joined together
  • Discontinuously
  • Synthesized away from replication fork
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13
Q

Step 4 of DNA Replication

A

DNA synthesis begins

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14
Q

What is DNA polymerase 3 (builder)

A
  • Enzyme that catalyzes the addition of nucleotides complementary to the template strand
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15
Q

What direction does DNA synthesis occur in?

A

5’ to 3’ direction

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16
Q

DNA polymerase 1, first function

A
  • Edits mistakes
  • Proofreads chain
  • Exonuclease activity
17
Q

Step 5 of DNA Replication

A

Synthesis of DNA occurs on both template strands

18
Q

Step 6 of DNA Replication

A

RNA primers are removed

19
Q

DNA polymerase 1, second function

A
  • chews up RNA primers and replaces them with DNA nucleotides
  • All primers are removed
20
Q

Step 7 of DNA Replication

A

All nicks are repaired

21
Q

What is DNA Ligase

A
  • Acts like glue to make phosphodiester linkages
  • Seals the nicks between Okazaki fragments
22
Q

Proofreading and repairing DNA

A
  • DNA polymerases proofread newly made DNA, replacing any incorrect nucleotides
23
Q

What happens in mismatch repair of DNA?

A

repair enzymes correct errors in base pairing

24
Q

Some reasons DNA can be damaged

A
  • exposure to harmful chemical or physical agents
  • can undergo spontaneous changes
25
Q

What does a nuclease do in DNA repair?

A

Cuts out and replaces damaged stretches of DNA

26
Q

What are telomeres?

A

Repeating DNA sequences at the ends of chromosomes that protect coding regions during replication

27
Q

Do telomeres prevent DNA shortening?

A

No, but they postpone the erosion of genes near chromosome ends

28
Q

What are shortened telomeres linked to?

A

Aging, including wrinkles and grey hair

29
Q

What is telomerase?

A

An enzyme that catalyzes the lengthening of telomeres in germ cells

30
Q

How is telomerase linked to cancer?

A
  • Cancer cells produce telomerase in high quantities
31
Q

Prokaryotic DNA Organization

A
  • Double stranded circular DNA molecules associated with small amounts of protein
  • DNA is supercoiled and found in the nucleoid
32
Q

Eukaryotic DNA Organization

A
  • Linear DNA molecules associated with large amounts of protein
33
Q

What is a nucleosome?

A

A unit of DNA storage made up of 8 histones

34
Q

What is a histone?

A

Structural Protein