DNA Flashcards

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1
Q

Draw the structure of a phosphodiester bond

A
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2
Q

What is the base paring for DNA?

A

adenine = thymine

guanine = cytosine

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3
Q

Why is DNA a stable molecule?

A
  • the phosphodiester backbone protects the more chemically reactive organic bases inside the double helix
  • hydrogen bonds link the organic base pairs forming bridges between the phosphodiester uprights
  • because there are three hydrogen bonds between cysteine and guanine, the higher proportion of C—G pairings, the more stable the DNA molecule
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4
Q

How is DNA adapted to carry out its function?

A
  • very stable structure. Rarely mutates
  • two separate strands are joined only with hydrogen bonds, which allows them to separate during DNA replication and protein synthesis
  • extremely large molecule and therefore carries an immense amount of genetic information
  • by having base pairs within the helical cylinder of the deoxyribose-phosphate backbone, the genetic information is to some extent protected from being corrupted by outside chemical and physical forces
  • Base pairing leads of DNA being able to replicate and to transfer information and mRNA
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5
Q

Name the two purine bases. How are they different from the pyrimidine bases? (name all the pyrimidine bases)

A
  • The bases adenine and guanine are purines
    – they have a double ring structure
  • The bases cytosine, thymine and uracil are pyrimidines
    – they have a single ring structure
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6
Q

Which bases form two hydrogen bond?

A

adenine and thymine

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7
Q

What are the two requirements for semi-conservative replication?

A
  • the four types of nucleotides (each with a different base) must be present
  • a source of chemical energy to drive the process
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8
Q

Describe the process of semi-conservative replication?

A
  • The enzyme DNA helicase breaks the hydrogen bonds between the two polynucloetide DNA strands causing the double helix to unzip, forming two single strands.
  • Each original single strand then acts as a template for a new strand. Free-floating DNA nucleotides join to the exposed bases on each original template strand via complementary base pairing.
  • The nucleotides of the new strands are joined together by the enzyme DNA polymerase, which catalyses a condensation reaction between the two adjacent nucleotides (joined together by phosphodiester bonds)
  • This forms the sugar-phosphate backbone. Hydrogen bonds form between the bases on the original and new strand and the strands twist to reform the double helix.
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9
Q

What does semi-conservative replication of DNA ensure?

A

genetic continuity between generations of cells

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10
Q

Describe the anti-parallel nature of DNA

A

As the strands run in opposite directions (they are antiparallel), one is known as the 5’ to 3’ strand and the other is known as the 3’ to 5’ strand

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11
Q

Draw a dna polynucleotide

A
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12
Q

Describe the experiment that prove semi-conservation

A

Replicating Bacterial DNA in 2 types of Nitrogen Isotopes, 15N and 14N

Nitrogen found in nitrogenous bases of DNA

Bacterial DNA made from 15N will have a Heavy Density

Bacterial DNA made from 14N will have a Light Density

Experiment =

Sample of 14N and 15N in separate test tubes are centrifuged : 14 at top and 15 at bottom

Bacterial DNA made of 15N is extracted and is replicated in an environment of 14N – produces DNA molecules with half 15/half 14 (semi-conservative replication, original strand = 15N & new strand = 14N), therefore, DNA molecule has medium density

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13
Q

What are the components of ATP?

A
  • Adenine
  • ribose
  • three phosphates group
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14
Q

Why is ATP easily broken?

A

the bonds between the phosphate groups are unstable = low activation energy = easily broken

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15
Q

The synthesis of ATP from ADP involves the addition of a phosphate molecule to ADP in three ways. What are these three ways?

A
  • in chlorophyll containing plant cells during photosynthesis (photophosphorylation)
  • in plant and animal cells during respiration (oxidative phosphorylation)
  • in plant and animal cells when phosphate groups are transferred from donor molecules to ADP (substrate-level phosphorylation)
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16
Q

How many bases make up an amino acid?

A

3

17
Q

What is the chemical equation of ATP hydrolysis

A
18
Q

What are the roles of ATP? (6)

A
  • immediate energy source
  • provides energy needed to build up macromolecules from their basic units (metabolism)
  • provides energy for muscle contraction, by providing the energy for gilaments of muscle to slide past one another and therefore shorten the overall length of the muscle fibre (movement)
  • provides the energy to change the shape of carrier proteins in plasma membranes, allowing molecules to move against the concentration gradient (active transport)
  • needed to form the lysosomes necessary for the secretion of cell products
  • activation of molecules = inorganic phosphate released during hydrolysis of ATP, can be used to phosphorylate other compounds in order to make them more reaction, lowering the activation energy.
19
Q

Why is ATP a better immediate energy source than glucose?

A
  • each ATP molecule releases less energy, so energy for reactions is released in smaller, more manageable quantities.
  • hydrolysis of ATP to ADP is a single reaction tha releases immediate energy vs the breakdown of glucose is a long series of reactions
20
Q

How is the hydrolysis of ATP used in cells

A
  • release of energy = good for cells which require energy
  • donates its phosphate to other substances, it can make these substances more reactive