Cytogenetics Flashcards
Number of genes on a metaphase band
50-100
Number of genes on a high resolution prophase band
50
3 members of a clinical genetics team
Cytogeneticist
Technologist
Lab
Chromosome band
Part of a chromosome clearly distinguishable from its adjacent segments by appearing darker/lighter
The pattern is unique to each chromosome
Ideogram
A schematic representation showing the size of a chromosome and their banding pattern
Number of bands visualized with G banding
400-500
G banding dark bands
More condensed Less transcriptionally active Late replicating AT rich Heterochromatin
G banding light bands
More transcriptionally active
CG rich
Euchromatin
High resolution banding
Uses compounds that interfere with condensation leading to longer chromosomes
Total number of bands visualized on high resolution banding
800-1200
C banding
Selectively stains heterochromatin around centromere
Silver staining
Stains nucleolar organizing regions
Metacentric
Centromere in the middle
Acrocentric
Centromere on one end
Satellites
Sub metacentric
Centromere towards one end of the chromosome
Chromosome landmark
Consistent and distinct morphologic feature to identify a particular chromosome
Chromosome region
Area found between 2 adjacent bands
SNP
A DNA variation in which a single nucleotide in the genome sequence is altered
Cooy number variant
Polymorphic alterations of unknown clinical significance
LSI probes
Locus Specific Identifiers
Number of genes on a chromosome
500-4000
5 uses for FISH
- Rapid diagnosis of aneuploidy
- Translocations
- Marker chromosomes
- Microdeletions
- Duplications
4 uses for array CGH
- Deletions
- Duplications
- Subtelomeric deletions
- Aneuploidy
Cannot use array CGH for
- Polyploids
- Balanced translocations
Also problem: variants of unknown significance
4 reasons to karyotype
- Highly suspect chromosome abnormality
- Family history of chromosome rearrangement
- Multiple miscarriages
- Prenatal diagnosis of aneuploidy