Cytogenetics Flashcards

0
Q

Haploid

A

Having one copy of each chromosome (N=1) eg. Human gamete

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1
Q

Karyotype

A

Display of chromosomes by their length

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2
Q

Diploid

A

Having two copies of each chromosome (N=2) eg. Human somatic cell

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3
Q

Aneuploid

A

Having one or more extra or missing chromosome

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4
Q

Balanced chromosomal abnormality

A

No net gain or loss of chromosomal material

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5
Q

Unbalanced chromosomal abnormality

A

Net gain or loss of chromosomal material

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6
Q

Uniparental disomy

A

A chromosome pair is derived solely from one parent in the diploid offspring

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7
Q

P and q arms of chromosomes

A

Short and long arms, respectively

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8
Q

Metacentric chromosome

A

Both arms are appx equal in length

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9
Q

Submetacentric chromsome

A

One arm is somewhat shorter than the other

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10
Q

Acrocentric chromosome

A

One arm is much shorter than the other

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11
Q

Autosome

A

Any of the chromosomes other than the sex determining chromosomes. In humans, X and Y are the sex chromosomes

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12
Q

Euchromatin

A

Decondensed (active) form of a chromosomal region

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13
Q

Heterochromatin

A

Condensed (inactive) form of chromosomal region. Constitutive heterochromatin is always condensed while facultative heterochromatin can become decondensed (active form) in certain circumstances

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14
Q

Chromosome banding

A

Staining of bands, or chromosome segments, allowing the precise identification of individual chromosomes or parts of chromosomes

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15
Q

Nondisjunction

A

The failure of the paired chromosome segments, allowing the precise identification of individual chromosomes or parts of chromosomes

16
Q

Reciprocal translocation

A

Segments from two different chromosomes have been exchanged

17
Q

Robertsonian translocation

A

Joining of two acrocentric chromosomes at the centromeres with loss of their short arms to form a single abnormal chromosome

18
Q

Inversion

A

A segment of the chromosome is flipped around and the genetic material is inverted

19
Q

Meiosis

A

Cell division by which germ cells are produced. Results in 50% reduction in the number of chromosomes present in gamete producing cells

20
Q

Mitosis

A

Type of cell division resulting in two cells with the same number of chromosomes as the parent cell

21
Q

Fluorescent in situ hybridization (FISH)

A

Allows distinct DNA segments > 40 kb in length to be visualized with probe DNA. Is used on parafinn embedded specimens. Commonly used to test for over expression of the HER2 gene is breast cancer tissue

22
Q

Spectral karyotype

A

Labeling each chromosome with a different dye combination, allowing one to track each chromosome on chromosome spreads. Important for cells with abnormal karyotypes. Requires live cells.

23
Q

Array CGH (array comparative hybridization)

A

Does not require living cells. Genomic DNA of interest is labeled with fluorescent dyes and hybridized to slides that have short DNA probes attached to them. Probes can represent virtually all areas of the genome. Based on pattern it is possible to identify insertions and deletions in the genome. Typically uses processed samples

24
Congenital chromosomal abnormalities
Abnormal chromosome number in the developing fetus and is commonly associated with miscarriages
25
Normal human karyotype
46, XX or 46, XY
26
Turner syndrome
Known as monosomy X; 45, X
27
Klinefelter syndrome
47, XXY
28
Triple X syndrome
47, XXX
29
47, XYY syndrome
47, XYY
30
Common congenital autosomal chromosomal abnormalities
Down syndrome, Patau syndrome, Edwards syndrome
31
Down syndrome
95% cases due to trisomy 21; 47, XX + 21 or 47, XY + 21
32
Patau syndrome
Trisomy 13; 47, XX + 13 or 47, XY + 13
33
Edwards syndrome
Trisomy 18; 47, XX + 18 or 47, XY + 18
34
Autosomal deletion syndromes
A very large chromosomal segment tens of mega bases in size, such as an entire arm is deleted. Typically due to de novo mutation in gamete of parent or mitotic error early in development
35
Haploinsufficiency
The remaining copy of the gene is insufficient for normal health
36
Cri du chat syndrome
Deletion of the short arm of chromosome 5; distinct facial features and hypotonia, poor muscle tone
37
Contiguous gene deletion syndromes
Small deleted genomic region containing two or more contiguous (located next to one another) genes. Involves maximum few mega bases Deleted genomic region tends to be much smaller than that of an autosomal deletion syndrome
38
DiGeorge syndrome
Patients have deletions in chromosome 22q11.2 genomic region; Show cleft palate, learning difficulties and immune deficiency Congenital heart disease in 74% of individuals