CP Microbiology x8 lectures Flashcards
Define - Antibiotic
Chemical products of microbes that inhibit or kill other organisms
Define Antimicrobial agents
-Antibiotics
-Synthetic compounds with similar effect
-Semi-synthetic i.e. modified from antibiotics
Different antimicrobial activity/spectrum, pharmacological properties or toxicity
Define Bacteristatic
Inhibit bacterial growth
Protein synthesis inhibitors
Define Bactericidal
Kill bacteria
Cell wall-active agents
Define minimum inhibitory concentration (MIC)
Minimum concentration of antibiotic at which visible growth is inhibited
Define Synergism
Activity of two antimicrobials given together is greater than the sum of their activity if given separately
Define Antagonsim
One agent diminishes the activity of another
Define indifference
Activity unaffected by the addition of another agen
Define clinical relevance
Synergism
β-lactam/aminoglycoside combination therapy of streptococcal endocarditis
What are antibacterial mechanisms
Inhibition of critical process in bacterial cells
- Antibacterial targets
- Enzymes, molecules or structures
Selective toxicity
- Target not present in human host
- Target significantly different in human host
What are antibiotic targets
Cell wall Protein synthesis DNA synthesis RNA synthesis Plasma membrane
What is the major component of bacterial cell wall
Peptidoglycan
polymer of glucose-derivatives, N-acetly muramic acid NAM and N-acetly glucosamine NAG
Not present in animal cells therefore ideal for selective toxicity
What drugs are cell wall synthesis inhibitors
β-lactams
Glycopeptides
Explain β-lactams
- Benzylpenicillin
- All contain β-lactam ring
- Four-membered ring structure (C-C-C-N)
- Structural analogue of D-alanyl-D-alanine
- Interfere with function of “penicillin binding proteins”
- Transpeptidases enzymes involved in the peptideoglycan cross-linking
What areβ-lactam antibiotics
example drugs
Penicillins
Benzylpenicillin (PEN), amoxicillin, flucloxacillin
Relatively narrow spectrum
Cephalosporins
Cefuroxime (CXM), ceftazidime etc.
Broad spectrum
Carbapenems
Meropenem (MER), imipenem
Extremely broad spectrum
Monobactams
Aztreonam (AZT)
Gram-negative activity only
What are glycopeptides
- Vancomycin, teicoplanin
- Large molecules, bind directly to terminal D-Alanyl-D-Alanine on NAM pentapeptides
- Inhibit binding of transpeptidases and thus peptideoglycan cross-linking
- Gram-positive activity
- Unable to penetrate Gram-negative outer membrane porins
In bacteria where does protein synthesis occur
Ribosome
- ribonucleoprotein complexes
- Catalyze peptide bond formation and synthesize polypeptides
Stages: initiation, elongation, termination, and ribosome recycling
50S (large) and 30S (small) subunits combine to form 70S initiation complex
S=Svedberg units; relative sedimentation rate
What do aminoglycosides do
Protein synthesis inhibitors
Gentamicin, amikacin
Bind to 30S ribosomal subunit
Mechanism of action not fully understood
What are Macrolides, Lincosamides, stretogamins (MLS)
protein synthesis inhibitors Erythromycin, clarithromycin (macrolides) Clindamycin (lincosamide) Bind to 50S ribosomal subunit1 Blockage of exit tunnel Inhibit protein elongation
What does tetracycline do?
Protein synthesis inhibitor Tetracyclines (tetracycline, doxytetracycline) Bind to 30S ribosomal subunit Inhibit RNA translation Interfere with binding of tRNA to rRNA
actions of oxazolidines
Oxazolidinones Linezolid Inhibits initiation of protein synthesis Binds to 50S ribosomal subunit Inhibits assembly of initiation complex May also bind to 70S subunit
What are mupirocin and fusidic acid
protein synthesis inhibitors
Examples of DNA synthesis inhibitors
Trimethoprim and sulfonamides
Inhibit folate synthesis
Folic acid is a purine synthesis precursor
Trimethoprim
Dihydrofolate reductase
Sulfonamides
Dihydropteroate synthetase
Combined as co-trimoxazole (trimethoprim-sulfamethoxazole)
Quinolones1 and fluoroquinolones2
Inhibit one or more of two related enzymes
DNA gyrase and topoisomerase IV
Involved in remodelling of DNA during DNA replication
Supercoiling/strand separation
Examples
Nalidixic acid1, ciprofloxacin2, levofloxacin2
RNA synthesis inhibitors
Rifampicin
RNA polymerase inhibitor
Prevents synthesis of mRNA
Plasma membrane agents
Daptomycin
Cyclic lipopeptide
Inserts lipophilic tail into cell membrane resulting in depolarisation and ion loss
Effective in Gram-positives only
Adverse effects of all drugs
Nausea, vomiting, headache, skin rashes etc.
Infusion reactions
Allergic reactions
Generation of antibiotic resistance (see separate lecture)
Selection of resistant strains in patient
Preferential colonisation on exposure to resistant strains
Fungal infection
Superficial and invasive candidiasis
Clostridium difficile infection
Antibiotic specific adverse effects
- aminoglycosides
- B-Lactams
- Linezolid
Aminoglycosides
Reversible renal impairment on accumulation
Therapeutic drug monitoring indicated
B-lactams
Main problems are allergic reactions
Generalised rash 1-10%
Anaphylaxis approx. 0.01%
Linezolid
Bone marrow depression
B lactams and allergy
Intolerance Nausea, diarrhoea, headache etc. Minor allergic reactions Non-severe skin rash Severe allergic reactions Anaphylaxis, urticaria, angio-oedema, bronchospasm, severe skin reaction (Stevens-Johnson syndrome)
Safe to use cephalosporins and carbapenems in patients with non-severe penicillin allergy
Safe to use aztreonam in patients with any penicillin allergy
Antibiotics and C diff
Common precipitating antibiotics
Cephalosporins
Ciprofloxacin (esp. ribotype 027)
Clindamycin
Less common precipitating antibiotics Benzylpenicillin Aminoglycosides Glycopeptides Piperacillin-tazobactam
May be precipitated by any antibiotics
What are the following antibiotics used to treat
- Flucloxacillin
- Benzylpenicillin
- cephalosporins
- metronidazole
- vancomycin
- meropenem
Flucloxacillin - Staphylococcus aureus (not MRSA)
Benzylpenicillin – Streptococcus pyogenes
Cephalosporins (avoid in elderly) – Gram-negative bacilli
Metronidazole – anaerobes
Vancomycin – Gram-positives (MRSA)
Meropenem – most clinically-relevant bacteria
what are the pharmacokinetic considerations
Important determinant of in vivo efficacy is concentration at site of action
CSF β-lactams Good availability in presence of inflammation Aminoglycosides and vancomycin Poor availability
Urine Trimethoprim and β-lactams Good availability MLS antibiotics Poor availability
What are pharmacodynamic considerations
Concentration dependent
Main determinant of bacterial killing is the factor by which concentration exceeds MIC
Administered intermittently to achieve high peaks
Aminoglycosides
Time dependent
Main determinant of killing is the amount of time for which antibiotic concentration exceeds MIC
Administered frequently to maintain high level
Β-lactams
In vitro phenomena applied in vivo
What is combination therapy
To increase efficacy
Synergistic combination may improve outcome
β-lactam/aminoglycoside in streptococcal endocarditis
To provide adequately broad spectrum
Single agent may not cover all required organisms
Polymicrobial infection
Empiric treatment of sepsis
To reduce resistance
Organism would need to develop resistance to multiple agents simultaneously
Antituberculous chemotherapy
What are the antibiotic resistant organisms
- Meticillin-resistant Staphylococcus aureus (MRSA)
- Vancomycin/glycopeptide-resistant enterococci (VRE/GRE)
- Extended-spectrum β-lactamase-producing Enterobacteriaceae (ESBL)
- NDM-1 producing Gram-negative bacilli
- Multi-drug resistant tuburculosis (MDR-TB)
- Extremely-drug resistant tuberculosis (XDR-TB)
Others
- Enterobacteriaceae resistant to amoxicillin, ciprofloxacin, gentamicin, carbapenems etc.
- Pseudomonas resistant to ceftazidime, carbapenems etc.
How does resistance affect the treatment of infection
Empiric therapy
-Risk of under-treatment
If “traditional” antibiotic is used
-Risk of excessively broad-spectrum treatment
-If risk of resistance is taken into account
Targeted therapy
Requires use of alternatives which may be:
-Expensive
E.g. linezolid, tigecycline, daptomycin vs. flucloxacillin for MRSA
-“Last line”
E.g. meropenem vs. ciprofloxacin for multi-resistant Enterobacteriaceae
Toxic
-E.g. colistin vs. meropenem for NDM-1 producers
Why is sensitivity testing important
- To enable transition from “empiric” to “targeted” antibiotic therapy
- To explain treatment failures
- To provide alternative antibiotics in case of
- Treatment failure
- Intolerance/adverse effects
- To provide alternative oral antibiotics when IV therapy no longer required
How does disk susceptability work
1) add organism
2) add antibiotics
3) incubate
4) read and interrupt result
- zone of inhibition
5) clinical interpretation
How does liquid medial (microtitre) susceptibility work
1) add antibiotic vary concentrations
2) add organism
3) incubate
4) read MIC
5) compare with breakpoint
6) interpret results
Range - more resistant –> more susceptible
Uses and Limitations of susceptibility testing
-The infection may not be caused by the organism that has been tested
-The correlation between antimicrobial sensitivity and clinical response is not absolute
-A patient with an infection caused by a specific micro-organism is more likely to respond if treated with an antibiotic to which the organism is “sensitive” than one to which it is “resistant”
-Certain organisms are “clinically resistant” to antimicrobial agents even where in vitro testing indicates susceptibility
Resistance genes may be expressed in vivo in response to antibiotic exposure
E.g. AmpC β-lactamase genes in Enterobacteriaceae
Hence the need for “clinical interpretation”
What are the mechanisms for antibiotic resistance
- No target – no effect
- Reduced permeability – drug can’t get in
- Altered target – no effect
- Over-expression of target – effect diluted
- Enzymatic degradation – drug destroyed
- Efflux pump – drug expelled
What are reasons for Absent target
Fungi/virus
infection is not bacterial
Reasons for reduced permeability
1)Vancomycin:Gram-negative bacilli
Gram-negatives have an outer membrane that is impermeable to vancomycin
2) Gentamicin:anaerobic organisms
Uptake of aminoglycosides requires an O2 dependent active transport mechanism
Reasons for target alteration
1)Flucloxacillin: MRSA
Altered penicillin-binding protein (PBP2’, encoded by MecA gene) does not bind β-lactams
2)Vancomycin: VRE
Altered peptide sequence in Gram-positive peptideoglycan (D-ala D-ala D-ala D-lac)
Reduces binding of vancomycin 1000-fold1
3)Trimethoprim: Gram-negative bacilli
Mutations in dhr (dihydrofolate reductase gene)
What drugs are effected by enzymatic degradation
1) Penicillins and cephalosporins: β-lactamases (including ESBLs and NDM-1)
2) Gentamicin: aminoglycoside modifying enzymes
3) Chloramphenicol: chloramphenicol acetyltransferase (CAT)
Drug efflux - causes?
Multiple antibiotics, specially in Gram-negative organisms1
Antifungal triazoles and Candida spp.
How does resistance occur
Antibiotic-modifying enzymes Β-lactamases (including ESBL) Penicillins, cephalosporins Aminoglycoside-modiying enzymes Gentamicin
Altered antibiotic targets
Penicillin-binding protein 2’ (“PBP two prime”) in MRSA
Peptide sequence in VRE peptidoglycan
Resistance genes encoded in plasmids
Circular DNA sequences transmitted within species and (less commonly) between species
Mainly by conjugation
Horizontal transfer of resistance
Enabled by transposons and integrons
DNA sequences designed to be transferred from plasmid to plasmid and/or from plasmid to chromosome
Often contain “cassettes” with multiple resistance genes
Vertical transfer of resistance
Chromosomal or plasmid-borne resistance genes transferred to daughter cells on bacterial cell-division
Consequences of antibiotic exposure
1) Sensitive strains exposed to antibiotics at sub-lethal concentrations
2) Chance of survival will be enhanced by development of resistance
3) Resistant strain will out-compete sensitive strains
4) Resistance perpetuated by vertical transfer
How to avoid problems with antibiotics
Never use an antibiotic unless absolutely necessary
Always use the most “narrow-spectrum” agent available
Use combination therapy if indicated
Be willing to consult expert information sources
What was the estimated number of people living with HIV in 2012
2.3million (1.9-2.7 million)
Pathogenesis of viral infections
- acute
- chronic
Acute - flu, measles, mumps
Chronic
- latent (with/without recurrence) - Herpes simplex, cytomegalovirus
-Persistent - HIV, Hep B, Hep C
What do viruses consist of
Nucleic acid (DNA, RNA) Protein - structural coat, enzymes Lipid evelope Obligate intracellular parasite
How does viral replication occur
1) Virus attachment to cell (via receptor)
2) Cell Entry
3) Virus Uncoating
4) Early proteins produced – viral enzymes
5) Replication
6) Late transcription/translation – viral structural proteins
7) Virus assembly
8) Virus release
What are examples of polymerases
- DNA to DNA
- DNA to RNA
- RNA to RNA
- RNA to DNA
1) DNA to DNA -Eukaryotes, DNA viruses
2) DNA to RNA, Eukaryotes, DNA viruses
3) RNA to RNA- RNA viruses
4) RNA to DNA, Retroviruses (HIV), Hepatitis B virus
What is the structure of a nucleotide
Base, Ribose sugar, triphosphate