COMPLETE EXAM 2 REVIEW Flashcards
Analogous
i.e. convergent
-similarities that are independently evolved are called analogous
NOT used in cladograms
Example: similarity of vertebrate and invertebrate eyes… both have independently arrived at essentially the same solution to the problem of converting EM radiation to neural impulses
“Tree Thinking”
Darwin thought of life as a tree- described living species at the tips, branches are groups of closely related species, branch points are speciation events
- united by shared ancestry
- completely revolutionized comparative and evolutionary biology
- linked embryology, genetics, medicine, etc.
Analysis of Fossils
pros: direct
cons: fragmentary, can be hard to interpret
phylogenetic analysis
- compare similarities of organisms (molecular)
- construct cladograms
phylogeny is constructed by…
speciation
origin of new characteristics
Systematics
classification to reflect the phylogeny of organisms
cladogram
a branching diagram depicting an estimate of the phylogeny
clade
a grouping that includes a COMMON ANCESTOR and all of the descendants (living & extinct) of that ancestor
monophyletic
shared derived trait (syapomorphy)
single origin- an ancestral species and all of the descendant species grouped together
implies close relationship
monophyletic groups = clade
polyphyletic
convergent similarity
- independent origins
- does not imply close relationship
i. e bats and birds
Paraphyletic
primitive similarity
- single origin
- does not imply close relationship
- e.g. lizards and crocs lack feathers, but so did the ancestor of birds
- paraphyletic groups
- most recent common ancestor but not all of its descendents
Goal of Phylogenetic analysis (Cladistic Methods)
-monophyletic groups
accurately describe relationships
Willi Hennig’s (1950,1966) Two principles for reconstructing phylogeny
parsimony
outgrip analysis
parsimony
the cladogram requiring the fewest evolutionary changes is (usually) preferred (AKA Occam’s Razor)
-uses the simplest explanation for the distribution of characters
taxon
group of similar and related individuals
speciation
the origin of new species, is at the focal pint of evolutionary theory
microevolution
consists of changes in allele frequency in a population over time
macroevolution
refers to broad patterns of evolutionary change above the species level
BSC Concept of species
all members have the potential to interbreed under natural conditions and produce viable, fertile offspring
“some” hybridization o.k. as long as it doesn’t occur naturally enough to overwhelm the boundary
Limitations of BSC Concept
-not always clear who has the “potential” to interbreed
-does not apply to asexual organisms
-can’t be applied to fossils
boundaries are arbitrary- i.e. dog x wolf
how much hybridization is too much?
morphological species
concept is a practical substitute for BSC- looks at structural features
phylogenetic species
smallest group on a tree
ecological species
viewed in terms of niche (function or place of an organism in a given ecosystem)
pre zygotic barrier
separates species by: preventing formation of a zygote or fertilized egg 1. habitat isolation 2. temporal isolation 3. behavioral isolation 4. mechanical isolation 5. gametic isolation
post zygotic barrier
separates species by: preventing development of viable or fertile offspring 1. reduced hybrid viability 2. hybrid infertility 3. hybrid breakdown
habitat isolation
may occupy the same range and be potentially able to hybridize, but prefer different habitats so never (or rarely) mate.
i.e. maggot fly races
temporal isolation
may potentially interbreed, but are “ready” at different times
many plants, animals breed at different times
i.e. apple maggots and hawthorn maggots
frogs
behavioral isolation
species may encounter each other, but do not mate because of differences in courtship or other behaviors.
i.e. birds, fire fly bling patterns, bird songs
mechanical isolation
e.g. lock and key
-found in many insects and flowers
(different anatomy)
gametic isolation
gametes do not recognize each other due to different receptors
reduced hybrid viability
hybrid offspring do not develop
do not survive as well
i.e. sticklebacks: benthic V. Limnetics
hybrid infertility
i.e. mules, tigons etc.
They are sterile
hybrid break down
1st generation hybrids are fertile, but when they mate, the 2nd generation hybrids are sterile or weak
-common in plants?
Allopatirc speciation
physical barrier divides population (vicariance)
i.e. a rise of a mountain range, formation of a river or valley, or changes in sea level
examples:
migration to an island or a new habitat
adaptive radiation
evolution of many diversely adapted species from a common ancestor (speciation on islands)
populations become different due to…
founder effect at outset (especially if one or both of the new populations are small) through genetic drift
natural selection under different conditions. May result in physical or behavioral differences that inhibit breeding even if contact is restored
Recontact of populations:
may reinforce differences acquired in isolation
hybrids gradually cease to form
-may overwhelm differences acquired in isolation
reinforcement
hybrid offspring have lower survival, so selection favors assortative mating
fusion
large areas of hybridization and highly fit hybrids may fuse the two species back into one
sympatric speciation
no physical barrier separating diverging populations
i. e. hawthorn maggots shows fidelity to hawthorn trees
1. Autopolypoidy
2. Allopoloploidy
autopolploidy
same species mate
duplication of chromosomes number occurs due to meiosis failure
reproductively isolates offspring from parent population
common in plants
facilitated by ability to self-fertilize
Allopoloploidy
hybridization and errors in meiosis lead to polyploid offspring with chromosomes from 2 different species that are FERTILE
i.e. marsh grass= wheat
Allopolyploidy in plants
key forces in plant speciation = new species
occupy novel ecological “intermediate niches” from parents
- hybrid vigor
“Evolution is a Tinkerer”
evolution takes a character and gives it an unexpected function
i.e. turns a leg into a wing
Macroevolutionary patterns
Broad-Scale patterns of change, diversification and extinction in the fossil record
- crossing the big boundaries- origin and consequences of new body plans
Anagenesis
patterns of change over time
Cladogenesis
patterns of diversification
Gradualism
-classic darwin
generally slow, constant change
distinction among fossil species fairly arbitrary
appeal to sketchiness of fossil record to explain gaps
does not claim that all change will be gradual, only that this is a predominant pattern
Punctuated equilibrium
emphasizes periods of stasis interspersed with periods of “rapid” change (geologically speaking)
works well with cladistics
emphasizes that most change occurs at speciation
stasis
long periods of subtle evolutionary change
“living fossils”
lineages that have changed so little for such a long time
i.e coelacanths
What causes Stasis
not always clear
-prob includes
stabilizing selection keeping the species from changing
variable directional selection that keeps the species fluctuating around a mean
genetic/ developmental constraints
- retention of primitive features in the absence of appropriate variation or directional selection
mosaic evolution
the evolutionary change of different adaptive components of the phenotype of an organism at different times or at different rates in an evolutionary sequence
“rapid” change
origin of a new species and characteristics over a time period that is short relative to the period of stasis
does NOT say that speciation/ changes are instantaneous - merely that they happen too quickly to be generally captured in the fossil record
spending on resolution of fossil record, may still be a million years!
What causes rapid diversification
- environmental change
2. ecological opportunity
environmental change
“sudden” appearance of every animal phyla within about 50 millions of years
why?
increased O2 levels supporting larger body size
predation
ecological opportunity
extrinsic
- extrinsic factors
provide opportunities to occupy previously unavailable niches - adaptive radiation
examples:
darwin’s finches
radiation of mammals after dinosaur extinction… also factor in the explosion of bilateral
ecological opportunity (intrinsic)
key innovations: characteristics that open up new opportunities
i.e. flowers, wants, etc.
novel characteristics
(tinkering)
6 origins of evolutionary novelty
- exaptation
- duplication
- Serial Homology
- Heterochrony
- Lateral Gene Transfer
- Homeotic genes and pattern formation
exaptation
evolution is a tinkerer!
flowers are modified leaves
insect wings may have arisen as heat collecting devices
duplication
evolution of genes with novel functions:
duplicated genes can evolve different (novel) functions
i.e. globin genes, Pseudogenes
Serial Homology
i. e. arthropod libs
- repetitive segments in the same organism
- duplicated limbs/ segments can specialize
heterochrony
changes in developmental timing can radically alter the adult appearance of an organism
example pedomorphosis
Paedomorphosis
a sexually mature adult retains features that were juvenile structures in its evolutionary ancestors
example: starfish
Lateral Gene transfer
horizontal movement of individual genes, organelles or fragments of genomes from one lineage to another
(often in bacteria)
homeotic genes
small sets of genes function as developmental master switches
homeotic genes and pattern formation
simple developmental/ genetic changes can have major effects
Factors influencing the shape of the tree of life:
key innovations and their consequences (wings and flowers)
major transformations
major radiations
Does the fossil record show gradualism and punctuated equilibrium?
yes
Origin of Life Problems
- we can’t observe, even indirectly the earliest steps
- even simplest forms of life are very complex
Which, if either, came first
DNA- info storage
OR
Proteins- do work, require info from DNA to be assembled
Four BIG steps to life
- formation of small organic compounds
- formation of complex polymers
- formation of liposomes to protect complex polymers (and more)
- formation of a system of self-replication
Formation of small, organic compounds
i.e. amino acids, nucleotides, sugars, etc. How? Oparin-Haldane Theory Miller (1953) tested how: atmosphere, spark
Oparin Haldane Theory
early atmosphere had little oxygen
early atmosphere was reducing (Lots of CH4, NH3, H2)
this favored reactions forming organic molecules
Panspermia Hypothesis
organic material (or actual life itself) from elsewhere
Formation of polymers
possible without cellular catalysts? yes.
need to concentrate monomers
need to catalyze reaction inorganically
not a huge obstacle
formation of liposomes
“aggregates of abiotically produced molecules”
can spontaneously form
artificial vesicles can be created from phospholipids
Protocells
can carry out cell like processes
store energy across membrane
take-up and release “metabolites”