CO Flashcards
1
Q
Dayhoff matrices
A
Dayhoff and colleagues, late 1960s-early 1970s
2
Q
BLOSUM matrices
A
Henikoff&Henikoff, 1993
3
Q
BLAST
A
Altschul et al., 1990 + Karlin-Altschul stats (also 1990)
4
Q
Global DP
A
Needleman and Wunsch, 1970
5
Q
Local DP
A
Smith&Waterman, 1981
6
Q
FASTA
A
Lipman and Pearson, 1985
7
Q
A single artificial sequence that approximates such a matrix (PSSM) may be used as query with the original BLAST programmes
A
Henikoff&Henikoff, 1997
8
Q
PSI-BLAST (position-specific iterated BLAST)
A
Altschul et al., 1997
9
Q
CLUSTAL
A
Higgins et al., 1987
10
Q
CLUSTAL W
A
Thompson et al., 1994
11
Q
Progressive Alignment
A
Feng and Doolittle, 1987
12
Q
Clustal W rewritten in C++
A
Larkin et al., 2007
13
Q
MAFFT
A
Katoh et al., 2002
14
Q
MUSCLE
A
Edgar, 2004
