Chromosomes and Disease Flashcards
Cytogenetics definition
study of chromosomes
When is most clinical analysis of chromosomes done?
Metaphase;
when chromosomes are condensed
G banding definition
visual inspection of chromosomes stained or labeled using dyes or fluorescent molecules;
Giemsa is US standard
How does the staining of chromosomes work?
Stains AT enriched regions;
genes are usually GC rich so light bands correspond to the regions of the chromosome with higher density of genes
How many bases does each band represent?
5-10 million bases on low resolution of chromosomes
Centromere definition
contain repetitive sequences and serve as the attachment point for the machinery that separates the chromosomes
Metacentric
centromere near middle of chromosome
Submetacentric
centromere located towards one end of the chromosome; results in short arm at the top (p arm) and long arm at the bottom (q arm)
Acrocentric
centromere is very close to one end of the chromosome
Telomeres
found at ends of chromosomes;
protect the chromosomes from getting too short
System for naming bands on chromosomes
- First part of name is the number of the chromosome followed by the arm (p or q)
- next number designates the region on the arm followed by the band number in that region;
(ex: 14q32 - q arm of chromosome 14, region 3, band 2)
Karyogram
organized image of a patient’s chromosomes
Karyotype
describes the total number of chromosomes, identifies the sex chromosomes, and specifies any numeric or structural abnormalities
Two classes of chromosomal abnormalities
Numerical abnormality;
Structural abnormality
Numerical abnormality
changes in chromosome number from usual 46
Structural abnormality
changes that affect how a chromosome is organized
Trisomy (numerical abnormality)
there is an extra copy of a chromosome;
1-3% of pregnancies, 15-20% of chromosomal abnormal spontaneous abortions
Monosomy (numerical abnormality)
there is a missing chromosome
Translocation (structural abnormality)
parts of two chromosomes are exchanged
Reciprocal translocation (structural abnormality)
parts of two chromosomes are exchanged in a balanced manner;
phenotypically normal unless break is in middle of the gene
Euploidy
loss or gain of entire chromosome set;
69 triploid, 92 tetraploid
Aneuploidy
loss or gain of less than entire chromosome set;
monosomy, trisomy
Mosaicism
presence of more than 1 cell line;
often results as a function of trisomy rescue
Synaptonemal complex
protein structure that forms mediating chromosome pairing
Chiasma
physical points along chromosome where crossing over has occurred
Recombination is essential…
avg 50 chiasmata in male meiosis;
>1 chiasma/chromosome arm is required for normal segregation;
recombination decreases near centromeres and increases near telomeres
What are two causes of aneuploidy in meiosis and mitosis
Nondisjunction and anaphase lag
Nondisjunction
failure of chromatids (during mitosis or meiosis II) or chromosomes (during meiosis I) to separate at anaphase
Anaphase lag
failure of a chromatid of chromosome to attach to the spindle and segregate into a daughter cell
Pseudoautosomal regions (PAR)
at x y of p arm, and q arm;
recombination in these regions is a challenge due to size difference;
leads to significant number of aneuploidy