Chem/Phys Flashcards
Solid–> Liquid –> Gas
Enthalpy and entropy pattern
enthalpy increases (least to most heat energy)
entropy increases
surfactant
reduces surface tension and total force resisting expansion
decreases work required to expand lungs
electrons in smaller orbitals
held more tightly to nucleus
harder to eject, higher energy
energy of electron orbit
En= RH/n^2
RH= rydberg constant = 1x10^7 m^-1
n
energy level
higher= more energy
l
azimuthal/angular momentum
Approximate geometric shape of the orbital
l=n-1
ml
magnetic quantum number (spatial orientation)
ml=-l…,0,…,+l
ms
spin quantum number (spin orientation)
ms= -1/2 or +1/2
electrons within same orbital
are paired and have opposite spins
Rutherford
gold foil experiment which showed the atom is actually a ton of empty space with a small positively charged
The bohr model
there is a small dense nucleus surrounded by orbiting electrons in different levels (shells) with discrete quanta (essentially energy packets) between them.
The heisenberg uncertainty principle
as we know more about momentum of a particle the less you know about its position and vice versa.
during decay…
isotopes are formed, but the atomic mass does NOT change
gamma rays
weightless packs of energy with no charge
electronegativity trend
most at top right
atomic radius trend
most at bottom left
Polarizability trend
largest on the bottom left (polarizability increases in larger atoms)
affinity chromatography
separates molecules based on interactions with stationary phase
column has a high affinity for protein of interest
SDS Page
binds anionic detergent to a polypeptide chain
SDS denatures and imparts even charges per mass unit so fractionation occurs by size alone
increased length of chromatography column
enhanced resolution
reactivity of SN1 mechanism
tertiary (most stable and most favored) > secondary > primary
react faster in polar protic solvents
first order with respect to the electrophile (prenyl bromide) and zero order with respect to the nucleophile (methanol)
SN1 steps
2 step reaction
1. leaving group dissociates and leaves behind unstable carbocation (slow/rate determining)
2. Nu- attacks carbocation + produce even mix of enantiomers (racemic)
Sn2 steps
- Nu- displaces leaving group through a backside attack
R/S becomes inverted
Central C will have 5 substituents
If the electrophile in an SN2 reaction is a chiral center, its stereochemistry will always be inverted by the reaction
Reactivity of SN2
primary favored– steric hinderance is limiting
favors polar, aprotic solvents (acetone/DMSO)
Lowest priority should be
Dashed (in towards page)
if not, switch R and S
Galvanic cells
have NEGATIVE ΔG
Utilize spontaneous redox reactions to produce electrical potential
ΔG Equation
ΔG° = -nFE°
The Gibbs free energy ΔG° of an electrochemical cell is related to the number of electrons n transferred in the overall reaction, the overall cell potential = E°cell, and Faraday’s constant F.
E cell
E cathode - E anode
E reduced - E oxidized
Capacitance
Ability to hold charge
C = q/v
Ratio of magnitude of the charged stored on one plate (pos charge) to the potential difference across the capacitor on the other plate (neg charge)
C =(ϵ0 ϵr A)/d.
C=ϵ0 A / d:
ϵ0is the permittivity of free space (8.85 x 10-12 F/m)
directly proportional to area and charge but inversely proportional to the distance between the two sides of the capacitor.
Heart Rhythm Control
SA node of the right atrium sends out action potentials which use gap junctions to propagate through tissue and contract
Action potential flows from SA node to atria
Atria contracts and sends blood to ventricles, which push blood out of the heart
Signal sped through bundle of His and Purkinje fibers to muscle cells of ventricle
Deoxygenated blood returns to right atrium via superior and inferior vena cavae and coronary sinus (drains coronary veins)
then, pumped into right ventricle through tricuspid valve
from right ventricle to pulmonary arteries through the pulmonary semilunar valves
After oxygenation, returned to heard via pulmonary veins and enters left atrium
Pumped through bicuspid valve from the left atrium to left ventricle which pushes blood into circulation
Phosphoric Acid
H3PO4
Phosphorous Acid
H3PO3
Ammonium
NH4
Ammonia
NH3
Common Ion Effect
pre existing presence of an ion in solution reduces molar solubility of a substance containing that ion
Ex. If you add NaCl to a solution already containing MgCl, it will not dissolve as well and will precipitate more
the decrease in solubility of an ionic precipitate by the addition to the solution of a soluble compound with an ion in common with the precipitate.
Ksp
the product of each substance’s dissolved ion concentration raised to the power of the stoichiometric coefficient (larger= more soluble)
Hooke’s Law
F= kx
Potential Energy of a spring
1/2 kx ^2
Charles’ Law
Direct relationship between gas’ volume and temp
if one increases, the other will too
physics formulas
d=vt
vf = vi + at
d = vit + 1/2 at^2
vf^2 = vi^2 + 2ad
1 atm in Pa
10^5 Pa
PE and KE
(1/2) m (vf)^2 = mgΔH
Homotropic Regulation
when a molecule serves as a substrate for its target enzyme and regulates enzyme activity
volume of gasses
changes as a result of pressure changes
solubility of water vapor in air
decreases with decreasing temperature
decreased temp, decreased relative humidity (can hold less water)
1 mol ideal gas
occupies 22.4 L
Titration equation
NaVa=NbVb
N= mol/L
Agonist
chemical that binds to a receptor and activates a biological response
positive controls
known to produce expected effect
PE
mgh
in joules
Wnet
ΔKE
in joules
Power (Watts)
Work (kJ) / Time (s)
W / t
Coulomb’s Law
Electrostatic force between 2 charged particles is proportional to individual charges and inversely proportional to the square of the distance
FE= k q1 q2 / r^2
transition metals
create colored solutions because they have unfilled d orbitals
pI (isoelectric point)
1/2 (pka1 + pka2)
inert gases
Ex. N2
Don’t react with oxygen or other gases, prevent side chain reactions
hydronium conc. > 1M
pH in negatives becomes possible
Protein synthesis
from N –> C
Solute concentration increase (in boiling systems)
Causes a decrease in the rate at which water molecules escape the liquid surface
Boiling point
where Pvap = Patm
Beta minus decay
move 1 right on periodic table
Beta plus decay
Move 1 left on periodic table
same for e capture
Alpha decay
Move 2 left on periodic table
Charge -4 on top
Torque formula
rFsinΘ
Work
fcosΘd
Km
the substrate concentration at which the reaction rate is half of its maximal value
Vmax
the rate attained when the enzyme sites are saturated with substrate
Newton’s laws
- at rest, stay at rest
- F = ma
- every action has equal and opposite reaction
Capacitors
In parallel= C1+C2+C3+…
In series= 1/C1+1/C2+1/C3+…
Resistance
In parallel= 1/R+1/R2+…
In series= R1+R2+R3+…
H2 w/ Pd
catalyzes aldehydes to alcohols
O3
used for oxidative cleavage of alkenes
strong oxidizing agent
NaCr2O7
KMnO4
LiAlH4
for reduction of aldehyde to primary alcohol
LiAlH4 is a strong reducing agent and will reduce carbonyl compounds, including esters and carboxylic acids, to alcohols.
Reducing agents decrease an atom’s oxidation state and reduce the number of bonds carbon has to electronegative atoms while increasing the number of bonds to less electronegative atoms (commonly hydrogen).
C-H (ir spec)
@ around 3000
OH or NH Peak (IR spec)
@ 3300-3500 (broad)
C-O bond (IR spec)
@1100
Aromatic Bond (IR Spec)
@1600
Alkene bond (IR spec)
@ 1600
Alkyne bond (IR spec)
@ around 2200
Carbonyl peak (IR spec)
@ 1700 (sharp)
Oxygen and  standard reduction potential
must possess a highly positive standard reduction potential because it is the final e- acceptor
ΔG and Keq
will be opposite
Exothermic
Release heat
Endothermic
absorb heat
Hess’s Law
H reaction = H products - H reactants
whether taking place in one step or multiple
Electrolytic cell
uses electric potential to drive a spontaneous redox reaction
Capacitor
uses conducting material between plates
Reagents for buffer solution
If buffer is acidic, will want a weak acid as reagent
If buffer is basic, will want a weak base as reagent
For total internal reflection
Light travels from more to less dense medium and can no longer refract
angle of incidence will be greater than the critical angle
only happens when n1>n2
Hydrotropes
Water soluble, surface active compounds that increase solubility of poorly soluble drugs
Sound is attenuated when
Attenuation= weakening of ultrasound signal
parts of the signal are reflected, scattered, absorbed, refracted, or diffracted
Alkyl groups are electron ____
donators
Generate a higher inductive effect
Amphiprotic species
can act as an acid or a base
ex. sodium bicarbonate NaHCO3 can dissociate into NAOH or HCO3-
Efficiency of a system
output work/input energy
Retention Factor
the distance the compound migrated divided by the distance of the solvent front
TLC
What is it dependent on?
Silica gel is polar and hydrophilic while mobile phase is usually a moderately polar, organic solvent
- non polar compounds dissolve in the organic solvent and move faster and further
Mnemonic: no problem fuck face (non polar faster further)
Dependent on polarity, temperature, eluting strength (increases with increasing solvent polarity)
- polar compounds will not move as far, nonpolar will have more affinity for mobile phase
- temp inversely proportional to eluting strength
Ideal Buffer
Will have a pKa within 1 value of the pH
An aldol condensation
results in a new carbon–carbon bond and an α,β–unsaturated enone. The reaction requires two carbonyl groups (from ketones and/or aldehydes) and occurs by the nucleophilic attack of an enolate on a carbonyl followed by elimination
- base pulls of a hydrogen to form a carbanion
- carbanion attacks carbonyl to create C-C bond
- an elimination reaction with heat removes alcohol and adds alkene
In a mixture of isomers…
the more stable product will predominate
Lactonization
the intramolecular reaction between an alcohol and a carboxylic acid that creates a cyclic ester (lactone).
Lactonization can be classified as both a dehydration reaction and a condensation reaction, as a molecule of water is lost when the two functional groups combine to form a lactone. Lactonizations that result in the formation of five- or six-membered rings are especially favorable.
reduction reaction
occurs when a substance gains electrons or decreases the number of carbon-heteroatom bonds (carbon to something other than carbon) at a specific carbon atom.
A lactamization
an intramolecular condensation reaction between an amine and a carboxylic acid that forms a cyclic amide (lactam).
A stereoselective reaction
results in the preferential formation of a stereoisomer. For example, a reaction that prefers either a cis or trans outcome would be stereoselective.
Conformational isomers
structures that have the same connectivity and can be interconverted by the rotation of σ bonds. Because conformational isomers are identical except for bond rotations, they are the same compound.
Constitutional Isomers
have the same molecular formula but differ in connectivity
Enantiomers
nonsuperimposable mirror images in which all stereocenters are inverted.
have same chemical properties, but differ in how they rotate the plane of polarized light
Diastereomers
stereoisomers with two or more chiral centers in which some, but not all, of the chiral centers are opposite.
have very similar chemical, but less similar physical properties,
The maximum number of stereoisomers possible for a compound
determined by the expression 2^n, where n is the number of stereocenters.
Be careful of meso compounds!
Energy stored in a capacitor
U= 1/2 C V^2
voltmeter
measures the voltage V between two points in an electric circuit. To measure V across a resistor, the voltmeter is connected in parallel with the resistor because circuit elements connected in parallel have the same V. By Ohm’s law, the resistor’s V equals the product of the current I and the resistance R: V=IR
should behave like an open circuit (ie, have a very large resistance) to ensure accurate voltage measurements
electric field E produced by a charge q
depends on Coulomb’s constant k and the distance r from q, according to the equation:
E= kq / (r^2)
Keq and ∆G
an equilibrium constant (Keq) > 1 corresponds to a negative ∆G. This makes logical sense, since Keq > 1 indicates that the reaction favors the products, while ∆G < 0 tells us that the reaction is spontaneous as written
Spontaneity at all temperatures
occurs when ΔH<0 and ΔS>0.
Vitamin considered an antioxidant
Vitamin E
High entropy in the membrane
when water is able to bond with hydrophilic (polar) residues
as the surface area of molecules increases,
so does the strength of intermolecular forces between molecules.
Peptide bond formation
occurs as the lone pair of electrons on the nitrogen atom on the amine attacks, and the amine adds to the carbonyl carbon, making it a nucleophilic acyl substitution.
In the process of bond formation, the hydroxyl group of the carboxylic acid leaves as a water molecule. Therefore, this is a condensation reaction
Dynein
a motor protein that walks towards the minus end of the microtubules, which is oriented towards the center of the cell.
Movement toward the center of the cell is described as retrograde.
Kinesin
a motor protein that is responsible for anterograde transport in cells.
Myosin
a motor protein that is primarily responsible for attaching to actin filaments during muscle contractions.
Selectin
a class of cell adhesion molecules (CAM) that mediate the inflammatory response, and is not a motor protein.
the refractive index (n) of a given material is defined as
n = c/vmaterial
This value is 1 for a vacuum and is approximated as 1 for air. For all other materials, n is greater than 1; for instance, window glass has a refractive index of 1.52.
Snell’s law
n1sin(θ1) = n2sin(θ2)
when light moves into a medium with a smaller index of refraction (that is, when n2 < n1).
(Ex. moving from water to air)
the angle θ with the normal will increase—in other words, the ray of light will bend further away from the normal.
critical angle
As the angle of the incident ray (θ1) increases, there will come a point where the angle of the refracted ray (θ2) reaches 90°
When angle increases beyond critical angle, the light can no longer refract at all and instead are reflected within the original medium (total internal reflection)
Ksp
solubility product constant
equilibrium constant for a solid substance dissolving in an aqueous solution
more soluble= higher Ksp value
getting molar solubility from Ksp
Ksp = [products] ^ # molecules
ex. Ca(OH)2
Ksp = [Ca] [OH]^2
Ksp = x(2x)^2
set Ksp = 4x^3
Equilibrium constant changes– how does it change?
will NOT change from changes in concentration (though concentration may affect whether a precipitate forms)
will only change by changing temperature
Equilibrium in a reaction where ∆H > 0
increasing the temperature will shift the reaction toward the products, while decreasing it will shift the reaction toward the reactants
Magnetic Field
If a sample has nuclear spin due to an odd number or protons or neutrons, will be affected by magnetic field
Atomic nuclei may align with the field (low energy) or against the field (high energy)
NMR spectrum
resonance frequencies are chemical shifts ranging from 0 on the far right to positive values on the far left
shift of 0 is assigned to TMS as a refernce point
peaks shifted to the right are upfield
peaks shifted to the left are downfield
NMR Signals
the distinct peaks (groups of hydrogens) created by hydrogens
unique hydrogens
hydrogens that are different than others in molecule (will not be unique if there are lines of symmetry)
NMR splits
how many individual peaks will be within a signal
n+1 where n = # of adjacent hydrogens
NMR shifts
how far away a signal is from 0 (on right @ TMS)
depend on electronegative atoms and unsaturated groups
- closer to electronegative atom/unsaturated groups will be downfield (further left) - downfield and de-shielded (When electronegative groups are present, they pull electron density away from the proton and further deshield it.)
IR spectroscopy main regions
4000-2500= single bond region
2500-2000= triple bond region
2000-1500= double bond region
C-H (ir spec)
@ around 3000
Aromatic Bond (IR Spec)
@1600
Strong acids to know
hydrochloric acid
nitric acid
Weak acids to know
Hydrofluoric acid
Acetic acid
If the stationary phase has a net positive charge
compounds with negative charges will be attracted to stationary phase and move slowly through column
compounds with positive charge will repel and elute through more quickly
Open System
Matter is exchanged; heat E can be exchanged
Closed System
No matter is exchanged; heat E can be exchanged
Isolated System
No matter is exchanged; no heat E is exchanged
First law of thermodynamics
the internal energy of an isolated system is constant
Inability to create or destroy matter
Energy cannot be added/taken away but can be converted into forms like heat or work
work can cause a change in…
transfer of energy that can cause a change in pressure or volume
Negative Latent Heat (enthalpy)
Implies that phase change is consuming energy
either melting, evaporation, or sublimation
Positive Latent Heat (enthalpy)
Implies that phase change is releasing energy
either freezing, vaporization, or deposition
Q=mL
Q= heat change
m= mass
L= specific latent heat
oxidation
(1) loss of an electron
(2) increased oxidation state
(3) loss of a C–H bond (e.g. alkane → alkene)
(4) gain of a C–O or C–N bond (or any bond between carbon and a highly electronegative atom)
reduction
(1) gain of an electron
(2) decreased oxidation state
(3) formation of a C–H bond (e.g. alkene → alkane)
(4) loss of a C–O or C–N bond (or any bond between carbon and an electronegative atom).
Oxygen-containing organic compounds exist on a spectrum of oxidation
from alcohols (most reduced/least oxidized) to aldehydes/ketones (intermediate reduction/oxidation) to carboxylic acids (least reduced/most oxidized)
Optical isomers
come in pairs and typically contain one or more chiral centers.
These substituents are arranged differently around the chiral carbon, in such a way that the molecule cannot be rotated to make the two arrangements match
Cis/Z
highest priority groups on the same side of the molecule
weak reducing agent
NaBH4
Ozonolysis
the cleavage of an alkene or alkyne with ozone (O3) that results in the multiple carbon–carbon bond being replaced by a double bond to oxygen (carbonyl)
The decibel scale
a logarithmic scale expressing the intensity of a sound as its ratio to that of the smallest detectable sound intensity I0). The intensity ratio of sound in decibels is defined as dB = 10log(I/I0), where I0 is 1 × 10−12 W/m2.
range of human hearing
from 20 Hz to 20 kHz
Synthesis reactions to create amino acids
Strecker synthesis is used to generate amino acids by reacting an aldehyde with a desired R group.
Gabriel synthesis can be used to generate primary amines, which can then be immediately followed-up with malonic ester synthesis to create an amino acid.
frequency of a spring
f = (1 / 2 π)(√k / m)
Oligodendrocytes
produce myelin in the CNS
Shwann Cells
produce myelin in the PNS
atom size
Compared to the neutral atom of a given element, its cation will be smaller but its anion will be larger.
strong vs weak lewis acids
Metal cations with a smaller ionic radius and a higher positive charge are stronger Lewis acids (electron acceptors) than those with a larger ionic radius and lower charge.
∆G°=−RT ln Keq
Use when you have equivalent constant
Imines
are composed of a carbon-nitrogen double bond with either a hydrogen atom or an R group attached to the nitrogen atom.
amide
a carboxylic acid derivative with a carbonyl carbon atom bonded to an amine group, as opposed to a hydroxyl group.
Enamines
functional groups that contain an amine group bonded to an alkene. Many imines can be converted to enamines through tautomerization.
imide
a functional group with a nitrogen atom bound to two acyl groups (ie, two carbonyl carbon atoms). Imides are structurally similar to acid anhydrides but include bonds with the acyl groups instead of oxygen atoms.
titration
To visually detect when a titration is complete, an indicator that has an endpoint (color change) near the pH of the equivalence point can be added to the solution. Different indicators change color across a particular pH range (endpoint range). The best indicator for a given titration is one that has a pH range that corresponds most closely to the pH of the equivalence point.
good leaving groups
The halogens are generally good leaving groups because they can form stable anions. Larger halogens are better leaving groups than small halogens because they can spread the negative charge over a larger surface area.
Acids in reactions
Acids catalyze many reactions by donating protons to a reactant. Protonation enhances electrophiles and increases the stability of leaving groups. Acids generally decrease the nucleophilicity of molecules.
Gabriel Synthesis
The Gabriel synthesis is a method used to make primary amines, including α-amino acids with potassium phthalimide and diethyl bromomalonate, (starting materials that have planar reaction sites without chiral centers).
postassium phtalimide acts as a nucleophile and attacks electrophilic C of diethyl bromomalonate in an SN2 reaction where Br leaves. Then, in another SN2 reaction, the α-carbon is deprotonated with a base and attacks an alkyl halide to add the amino acid side chain.Hydrolysis of the phthalimide group and the esters on the α-carbon is followed by acidification of the carboxyl groups and decarboxylation, yielding an amino acid.
Although the decarboxylation step creates a stereocenter, this step is not stereospecific and causes the Gabriel synthesis to yield a mixture of enantiomers (R and S aas).
Resolving Agent
creates a mixture of diastereomers
Chiral column Chromatography
Uses a chiral stationary phase that interacts more strongly with one enantiomer while the other moves more quickly through the column
Vacuum distillation
performed under reduced system pressure, thereby lowering a compound’s boiling point.
Compounds with high boiling points (>150 °C) tend to decompose at or near their boiling point. Therefore, vacuum distillation is ideal for compounds with a boiling point over 150 °C to prevent degradation
Fractional distillation
ideal for compounds with boiling points less than 25°C apart and less than 150°C
the initial distillate will be enriched in the lowest boiling point that was placed in the flask. highest boiling point will be in the final fractions
Simple distillation
if the components have widely different boiling points (greater than a 100 °C difference in boiling points).Aug 11, 2020
Gas-liquid chromatography
a technique that separates compounds based on boiling point. Compounds with lower boiling points have shorter retention times than compounds with higher boiling points. For compounds with a similar number of carbon atoms, the boiling point depends on the functional group and the strength of intermolecular forces present.
branching (decreases surface area and increases steric hinderance) decreases the boiling point
High-performance liquid chromatography (HPLC)
separates molecules according to their relative polarity and the resulting interactions with the mobile and stationary phases.
nonpolar compounds elute faster than polar (nonpolar compounds have a shorter retention time, and polar compounds have a longer retention time.)
think of “like dissolves like” principle; nonpolar compounds more closely interact with nonpolar, vice versa
on a chromatogram, the area under the curve is proportional to the quantity of material present
In reversed-phase HPLC, the mobile phase is a polar solvent and the stationary phase is made of a nonpolar material. (polar molecules will move up the most)
the stationary phase is polar relative to the mobile phase. Molecules with more polar bonds have a greater affinity for the stationary phase, and thus have a longer retention time than molecules with fewer polar bonds
Extraction
a technique that uses an organic solvent and an aqueous solution to separate molecules based on solubility. Molecules have a greater affinity for solvents with similar polarity (“like dissolves like”).
Modifying a molecule’s charge or polarity changes its affinity for the organic or aqueous layer.
Exothermic/Endothermic
An endothermic reaction has a positive ΔH° and absorbs heat from the surroundings
An exothermic reaction has a negative ΔH° and releases heat into the surroundings.
Is the reaction spontaneous? (S and H)
When ΔS° is positive and ΔH° is negative (ie, an exothermic reaction), the process is always spontaneous (−ΔG°).
When ΔS° is negative and ΔH° is positive (ie, an endothermic reaction), the process is nonspontaneous (+ΔG°) at any temperature.
When both ΔS° and ΔH° are negative, the process is spontaneous (−ΔG°) at low temperatures and nonspontaneous (+ΔG°) at high temperatures.
When both ΔS° and ΔH° are positive, the process is spontaneous (−ΔG°) at high temperatures and nonspontaneous (+ΔG°) at low temperatures.
the length of a σ bond
can be estimated as the sum of the atomic radii of the bonded atoms
liquid-liquid extraction
a lab technique to separate materials based on differences in solubility.
Liquid-liquid extraction requires liquids that are not soluble in one another (immiscible) and form two distinct layers when placed in a container.
Extraction liquids typically have different polarities, and dissolved solute(s) partition between the two layers based on the principle of “like dissolves like.”
Functional groups on the mass spectrum
Amides, amines, and compounds that contain an odd number of nitrogen atoms have a molecular ion with an odd m/z and fragments with an even m/z.
Some alcohols are prone to dehydration, where the molecular ion is apparent 18 m/z below the expected value.
Chlorinated and brominated compounds have peaks determined by their natural isotopic abundance.
Specific rotation measures what?
measures the direction (+ or −) and magnitude (angle) of rotation by which chiral molecules rotate plane-polarized light.
polarimeter
the instrument used to measure the rotation of polarized light.
Specific Rotation Equation
= observed rotation / (c x l)
c is concentration in g/mL
l is path length in dm
Waxes
hydrolyzable lipids that contain an ester bond formed by the linkage between a long-chain fatty acid and a long-chain alcohol.
HOMO/LUMO
populated starting with lowest energy MO
HOMO= highest occupied molecular orbital
LUMO= lowest unoccupied molecular orbital
conjugation (more stable, lower energy)–
- decreases the HOMO-LUMO energy difference
- increases the λmax
molecules with a smaller gap between HOMO and LUMO are more easily excited and can absorb longer wavelengths
Energy of a photon
E = h f
E = h c / λ
Base Peak
the m/z value that produces the highest relative abundance (100%) and normally corresponds to a cation that is either especially stable or likely to form.
Mass spectrometry experiments ionize samples and detect the abundance of ions at each mass-to-charge ratio (m/z).
Fingerprint region
in IR spec, wavenumbers from 1500 - 400 cm-1
Deshielding
the more a protons electron density is pulled away (by more electronegative elements), the less it can shield itself from the applied magnetic field.
Extraction
Two solvents must be immiscible – form two layers and do not mix.
Aqueous phase: polar layer, usually water
Organic phase: nonpolar layer
Separatory Funnel: equipment used to isolate the two phases after they have been given time to spread out again.
Denser layer sink to the bottom due to gravity, and can be removed.
More common for organic layer to be on top, but ultimately depends on density.
Once the desired product has been isolated, it can be obtained by evaporating the solvent by using a rotary evaporator.
Wash: reverse of the extraction process in order to remove unwanted impurities.
Small amount of solute is used to extract and remove impurities
Solubility based separations
extraction
filtration
recrystalization
gas chromatography
separates molecules primarily on the basis of boiling point.
Compounds with a lower boiling point tend to stay in the gas phase and move through the column quickly, whereas compounds with higher boiling points have a greater tendency to interact with the liquid phase and a longer retention time.
For compounds with the same number of carbon atoms, alkanes have the lowest boiling point, followed by aldehydes and ketones, alcohols, and carboxylic acids.
eluent is a gas instead of a liquid
mobile phase is usually an inert gas
compounds must be volatile (low melting point, sublimable, vaporizable)
IUPAC Naming
- Identify the Longest Carbon Chain Containing the Highest-Order Functional Group
The highest priority functional group (with the most oxidized carbon) will provide the suffix
If there are two or more carbon chains of equal length, then the more substituted chain gets priority as the parent chain. - Number the Chain
The carbon numbered one will be the one closest to the highest-priority functional group.
If the functional groups all have the same priority, numbering the chain should make the number of the substituted carbons as low as possible
The more oxidized a carbon is, the higher priority it has in the molecule.
Oxidation state increases with more bonds to heteroatoms (atoms beside hydrogen and carbon) and decreases with more bonds to hydrogen.
For rings, numbers start at the point of greatest substitution, and continues in that direction
If there is a tie between assigning priority in a molecule with double and triple bonds, the double bond takes precedence. - Name the Substituents
Substituents are functional groups that are not part of the parent chain.
Substituents name will be placed at the beginning of the compound name as a prefix, followed by the name of the longest chain.
Only the highest priority functional group will determine the suffix for the compound
Carbon chain substituents are named like alkanes, with suffix –yl replacing –ane
n- prefix indicates that it is normal or is a straight chain alkane.
If there are multiple substituents of the same type, prefixes such as di-, tri- & tetra- are used. - Assign a Number to Each Substituent
Pair the substituents that you have named to the corresponding number in the parent chain
Multiple substituents of the same type will get both the required prefix and a carbon number designation, even if they are on the same number - Complete the Name
Always begins with the names of the substituents in alphabetical order, and each substituent is preceded by its number.
Numbers are separated by commas, and word with hyphens
Name is finished with the name of the parent chain with the suffix being the functional group of the highest priority.
Naming Alkanes
Simple hydrocarbons with the formula: CnH2n+2
Goes methane, ethane, propane, butane, pentane, hexane, heptane, octane….
Alkyl halides are alkanes with halogen substituents (common). Have the following prefixes: fluoro-, chloro- , bromo-, or iodo-.
Naming alkenes and alkynes
indicated by the lower number carbon that precedes the bond
Alcohol naming
carbon attached to hydroxyl group gets the lowest possible number
hydroxyl groups on same carbon: germinal diols
hydroxyl groups on adjacent carbons: vicinal diols
aldehydes/ketone naming
contain a carbonyl group; are chain terminating (carbonyl appears at the end of the chain)
replace -e with -al (aldehyde) or -one (ketone)
aldehydes: carbonyl takes precedence and is given the number
ketones: list alkyl groups in order then end with ketone
state functions
Includes enthalpy, entropy, and Gibbs free energy; means they describe the energetic differences between the reactants and the products in their current state. These values are independent of the chemical pathway that a reaction takes to get from reactants to products.
Process functions
(or path functions) describe the path taken by a system to transition from one equilibrium state to another. A system transitions from one state to another due to a net flow of energy in the form of heat transfer or work. For example, the loss or gain of heat is a process function because it describes the path taken by a system from its current pressure, volume, and temperature to a different set of values.
photoelectric effect
when light of a sufficiently high frequency is incident on a metal in a vacuum, the metal atoms emit electrons
electrons produce a current (more intense light, more electrons on electrode, larger current)
Threshold frequency
minimum frequency of light that causes ejection of photons
if frequency of photon is more, electron will be ejected with kinetic energy:
Kmax = hf - W
Mass defect
difference between theoretical mass of a nucleus and the actual mass; actual mass is smaller (since some has been converted into speed of light)
Binding energy
allows nucleons to bind in the nucleus; bonded nucleons have lower energy than unbonded constituents; difference is emitted as radiation
higher binding energy= more stable nucleus
isotope decay
When parent nucleus, X, undergoes nuclear decay to form daughter nucleus Y, the balanced reaction is: ZAX=Z’A’Y+emitted decay particle
exponential decay
∆n/∆t=-λn
n=n0e^-λt
Conductivity
in Siemens/m (vs. conductance which is in Siemens)
measures how well electrons can flow
metallic or electrolytic
electrolytic occurs in an ionic solution when electrodes are placed in an electrolyte solution and a voltage is applied; electrolyte will conduct electricity
Kirchoff’s Junction Rule
I entering at junction= I exciting from junction
must have the same amount of charges going in and out
When a resistor is removed from a series circuit, there is a larger voltage drop across the remaining resistors.
Current
I=Q/∆t
Insulators
internal charge cannot flow freely and cannot conduct electric current; does NOT transmit heat/sound/electricity
Resistivity
the property of a material quantifying how strongly it resists or conducts current; low resistivity indicates ready flow of electric current
p (resistivity) = R x A / L
R= resistance
L = length (if length increases, resistance increases)
A= area (increases number of conduction pathways which reduces resistance)
Properties of resisters
Resistivity: intrinsic resistance
Length: longer= increased resistance
Cross Sectional Area: increases number of conduction pathways and reduces resistance
Temperature: typically greater resistance at higher temperatures; increases thermal vibration to increase resistance to e- flow
Ohm’s Law
V=IR
Power (Ohm’s Law)
P= I V =I^2 X R = V^2 / R