Chapter 6 + Quiz Questions Flashcards
Life depends on the ability to ..?
Efficiently and selectively catalyze chemical reactions
True or False: most biomolecules are very stable with rates of uncatalyzed transformations that are too slow to permit life?
True
Enzymes provide a mechanism for 1., 2., and 3. for reactions
- Acceleration
- Regulation
- Coordination
The most striking feature about enzymes are their ____ ____ and ______
Catalytic power, specificity
True or False: enzymes serve only as catalysts?
False, they can also be information sensors
Define Vitalism
The belief that living things are fundamentally different from non-living things; that they contain some non-physical element and are governed by different principles than inanimate objects
Which scientist believed in vitalism?
Louis Pasteur
What as Eduard Buchner’s contribution to Biochemistry?
He demstrated that dead yeast still converts sugars into alcohol, indicating the reactions of life were separate from life
What are co-factors?
Inorganic ions such as Mg2+ and Fe2+
What are co-enzymes?
Complex organic molecules/vitamins
True or False: some enzymes require co-factors or co-enzymes for activity?
True
What is a prosthetic group?
A co-enzymes or co-factor that is tightly associated with the enzyme, the difference is the degree of association
Different enzymes that use the same co-enzyme usually perform ___ types of reactions
similar
Catalysts ___ the amount of energy required for a reaction to proceed
lower
Do catalysts speed up or slow down the attainment of equilibrium? Do they change equilibrium?
Speed up, and they do not influence the difference in
free energy between S and P and therefore do not influence the equilibrium
Catalysts are ____ by the reaction; ____ to participate in another reaction
unchanged, recycled
Which is faster: enzymes or chemical catalysts?
Enzymes are often much faster, some approaching catalytic perfection
Which of the two require extremes of temperature, pressure and pH: enzymes or chemical catalysts?
Chemical catalysts, enzymes function under physiological conditions
Which has a higher degree of specificity: enzymes or chemical catalysts?
Enzymes, this includes specificity for what they act upon and what they produce, and steroespecificity
Which of the two are responsive to the dynamic needs of the cell and organism: enzymes or chemical catalysts?
Enzymes
True or False: enzyme rates of catalysis can approach the physical limit of rates of diffusion of molecules in solution?
True
Some enzymes have ___-_____ steps that are roughly as fast as the binding of substrates to the enzymes
rate determining
Some enzymes are able to catalyze reactions ______ than predicted by diffusion-control limits
faster
What is the meaning of this relationship? E + S <-> ES <-> E + P
Enzymes catalyze the interconversion of substrate and product
What is the Active Site?
The portion of enzyme responsible for binding the substrate to formation of an enzyme-substrate (ES) complex
The active site is a 3D cleft formed from _______ parts of the _______ chain
different, polypeptide
True or False: the active site represents a large part of the enzyme?
False, it represents just a small part
Active sites are unique _______
microenvironments
Substrates are bound to enzymes by multiple ____ interactions
weak
The specificity of substrate binding depends on the ..?
Precisely defined arrangements of atoms in the active site. Enzymes and their active sites can be quite flexible
Substrate binding can cause _____ ___ or _______ ______
Induced fit, conformation selection
What is the Lock and Key model?
The active site is like a “lock” to which substrate fits like a “key.” The enzyme’s active site and substrate should fit like lock & key to initiate a reaction
What is the Hand-in-a-Glove (induced fit) model?
Binding of substrate induces a conformational change in the active site and both adjust their shapes to provide optimal fit
A reaction can only be spontaneous if ΔG ? 0
ΔG < 0
Define spontaneous
The reaction will proceed without the input of energy and the reaction releases energy (exergonic)
Define Exergonic reaction
The reaction releases energy
A reaction is non-spontaneous if ΔG ? 0
ΔG > 0
Define Endergonic reaction
An input of free energy is required to drive the reaction
In a system at equilibrium, there is no net change in the concentration of the products and reactants, and the ΔG ? 0
ΔG = 0
The ΔG of a reaction depends only on ..?
The free energy of the product minus the free energy of the reactants
True or False: the ΔG of a reaction is independent of the steps of the transformation?
True
True or False: the ΔG provides all the information about the rate of a reaction
False: the ΔG provides no information
What determines the rate at which equilibrium is reached?
Activation energy (ΔG‡) between S and P
Enzymes provide an alternate, lower-energy pathway between the substrate and product, _____ ΔG‡
lowering
The relationship between the rate of a reaction and the activation energy is _____ and _______
inverse, exponential
What determines the equilibrium of the reaction
Difference in free energy between S and P
Enzymes provide a ____-energy pathway between the substrate and product, ____ the activation energy of the transition state and ____ the rate of reaction
lower, decreasing, increasing
Catalytic capabilities of enzymes result from both _____ and ____ effects
chemical, binding
What is classified under Binding Effects?
Substrate Binding and Transition-state Stabilization
What is classified under Chemical Effects?
Acid/Base Catalysis and Covalent Catalysis
Binding of substrate in the active site provides ____ and ____ ____
specificity, catalytic power
In this relationship: E + S <-> ES <-> ETS <-> E + P, what is considered Substrate Binding and what is considered Transition State Stabilization?
E + S <-> ES = Substrate Binding
ES <-> ETS = Transition State Stabilization
What are the 5 ways Substrate Binding promotes reactions?
- Reducing entropy
- Alignment of reactive functional groups of the enzyme with the substrate
- Desolvation of the substrate to expose reactive groups
- Distortion of substrates
- Induced fit of the enzyme in response to substrate binding
An increased interaction of the enzyme and substrate occurs in the ____-____
transition-state
What is the essence of catalysis?
The stabilization of the transition state
The enzyme _____ the substrate, forcing it toward the transition state.
distorts
The active site is complementary to the transition-state in _____ and ______ _______
shape, chemical character
Active site must be _____ enough to substrate to ensure specificity, ____ enough to promote change
similar, different
What are Transition-state analogs (TSAs)?
Stable compounds that resemble unstable transition states
True or False: transition-state analogs have potential therapeutic applications as competitive inhibitors
True
What are Competitive Inhibitors?
Molecules that bind to the active site of an enzyme,
they tend to resemble the substrate molecule
What is the problem with competitive inhibitors and their resemblance to the substrate molecule?
TSAs can bind the active site of a target enzyme active site with high affinity, preventing substrate binding
After substrate binding, the enzyme can act upon the substrate to promote ______ of the product
formation