Chapter 26 Flashcards

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1
Q

What are viruses composed of?

A

Viruses are composed of genetic material (DNA or RNA or both), a protein coat called a capsid that protects the genetic material, and sometimes an envelope derived from the host cell membrane. The envelope contains host cell phospholipids, membrane proteins, and viral proteins.

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2
Q

Why are viruses considered non-living?

A

Viruses are considered non-living because they cannot reproduce or metabolize independently. They lack essential cellular components such as ribosomes, cytoplasm, and cellular organelles. They exist in a state between life forms and chemicals, leading a “borrowed” life by depending entirely on host cells for reproduction and metabolism.

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3
Q

What is the size range of viruses?

A

Viruses are extremely small, even smaller than prokaryotic cells. The smallest viruses can be as tiny as 20 nm, smaller than a ribosome, while the largest viruses can be up to 1500 nm and visible under light microscopy.

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4
Q

Who first demonstrated that tobacco mosaic disease could be transmitted through plant sap?

A

Adolf Mayer in 1883. He studied tobacco mosaic disease (TMD) in tobacco plants, noting symptoms like stunted growth and mottled leaf coloration. Mayer demonstrated that the disease could be transmitted through plant sap, hypothesizing that it was caused by small, invisible bacteria.

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5
Q

What did Dmitri Ivanowsky discover about the infectious agent of tobacco mosaic disease?

A

Dmitri Ivanowsky, in 1890, filtered sap through bacteria-excluding filters and observed that the filtered sap still caused infection, ruling out typical bacteria. He suggested that the infectious agent was either a very small bacterium or a toxin secreted by bacteria.

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6
Q

Who coined the term “virus” and what was his contribution?

A

Martinus Beijerinck in 1898. He conducted experiments showing that the infectious agent of tobacco mosaic disease replicated only in host plants and could not be grown in nutrient-rich lab media. He proposed that the agent was a replicating particle far smaller and simpler than bacteria, coining the term “virus.”

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7
Q

What are the types of viral genomes?

A

Viral genomes can be double-stranded DNA (dsDNA), single-stranded DNA (ssDNA), double-stranded RNA (dsRNA), or single-stranded RNA (ssRNA). Examples include:

dsDNA: Adenovirus (respiratory illness), Herpesvirus (cold sores, shingles)
ssDNA: Parvovirus (mild rash)
dsRNA: Reovirus (rotavirus; diarrhea)
ssRNA (direct mRNA): Picornavirus (common cold, polio), Flavivirus (Zika, yellow fever), Coronavirus (SARS, MERS)
ssRNA (template for mRNA synthesis): Influenza, Ebola
ssRNA (template for DNA synthesis, retroviruses): HIV (AIDS)

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8
Q

What is the function of the protein coat (capsid) in viruses?

A

The protein coat, or capsid, encloses the viral genome, protecting it from environmental factors and aiding in the infection of host cells. It is composed of protein subunits called capsomeres, which provide structural support and protect the nucleic acid.

Flashcard 9

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9
Q

What are bacteriophages and their significance?

A

Bacteriophages, or phages, are viruses that infect bacteria. They are significant in molecular biology and genetics research, having been used to demonstrate that DNA is the genetic material. Phages have complex structures, including an elongated icosahedral head and a protein tail used to inject DNA into bacterial cells.

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10
Q

What is the role of a viral envelope?

A

A viral envelope surrounds the capsids of some viruses, mainly those infecting animals. It is derived from the host cell membrane and contains host cell phospholipids, membrane proteins, viral proteins, and glycoproteins. The envelope aids in host infection by enabling the virus to fuse with the host cell membrane and helps the virus evade the host’s immune system.

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11
Q

How do viruses replicate?

A

Viruses replicate by hijacking the host cell’s machinery. The process involves:

Attachment and entry: Viruses bind to host cells using specific surface proteins that recognize and attach to receptor molecules on the host’s surface.
Reprogramming the host cell: The viral genome hijacks the host’s cellular machinery to replicate viral nucleic acids and synthesize viral proteins.
Assembly: Capsomeres and viral genomes self-assemble into complete viruses within the host cell.
Exit: Newly assembled viruses exit the host cell, often causing cellular damage and death, leading to symptoms of viral infections.

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12
Q

What is the lytic cycle in phages?

A

The lytic cycle involves the destruction of the host cell. After the phage infects a bacterium, it hijacks the host cell’s machinery to produce phage particles. Once production is complete, the host bacterium bursts (lyses), releasing newly made phages that can infect more bacterial cells.

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13
Q

What is the lysogenic cycle in phages?

A

The lysogenic cycle allows the phage to coexist with the host bacterium. The phage genome integrates into the bacterial chromosome without destroying the host cell. This cycle allows the virus to replicate along with the host’s genome during cell division, spreading the phage genome without harming the host.

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14
Q

What are temperate phages?

A

Temperate phages are phages that can undergo both the lytic and lysogenic cycles. An example is the lambda phage, which can alternate between these cycles. In the lysogenic cycle, the phage integrates into a specific site on the bacterial chromosome, becoming a prophage.

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15
Q

How do bacteria defend against phages?

A

Bacteria have evolved several defense mechanisms against phages, including:

Mutation of surface receptors: Bacterial mutants produce surface proteins that phages cannot recognize, preventing attachment and infection.
Restriction enzymes: These enzymes cut up invading phage DNA, limiting its ability to replicate within the host cell.
CRISPR-Cas system: This adaptive immune system stores DNA from previous phage infections and uses it to recognize and cut phage DNA during subsequent infections.

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16
Q

What is the role of the CRISPR-Cas system in bacterial defense?

A

The CRISPR-Cas system provides adaptive immunity by recognizing and cutting phage DNA. When a phage infects a bacterium, its DNA is incorporated into the CRISPR region. If the bacterium survives, this DNA is used to protect against future infections by the same phage. Cas proteins, guided by RNA transcribed from the CRISPR region, find and destroy the phage DNA.

17
Q

What are the main types of animal viruses based on their genomes?

A

Animal viruses can have various types of genomes, including:

Double-stranded DNA (dsDNA)
Single-stranded DNA (ssDNA)
Double-stranded RNA (dsRNA)
Single-stranded RNA (ssRNA), which can be further classified into:
Class IV: Direct translation (e.g., Picornavirus)
Class V: Template for mRNA synthesis (e.g., Influenza)
Class VI: Retroviruses with reverse transcriptase (e.g., HIV)

18
Q

What is unique about retroviruses like HIV?

A

Retroviruses, such as HIV, contain the enzyme reverse transcriptase, which transcribes RNA into complementary DNA (cDNA), reversing the usual flow of genetic information. HIV is an enveloped virus with two identical ssRNA molecules and two reverse transcriptase enzymes. The viral DNA integrates into the host genome, becoming a permanent resident called a provirus.

19
Q

How do plant viruses spread?

A

Plant viruses spread through:

Horizontal transmission: Virus enters a plant from an external source, often facilitated by damage to the plant’s epidermis or by insects acting as carriers.
Vertical transmission: Virus is inherited from parent plants through asexual propagation (cuttings) or sexual reproduction (infected seeds). Within plants, viruses spread via plasmodesmata, cytoplasmic connections between plant cells.

20
Q

What are prions and how do they cause disease?

A

Prions are infectious proteins that cause degenerative brain diseases in animals and humans. They spread without nucleic acid. Prions act very slowly, with an incubation period of at least 10 years before symptoms appear. They are resistant to heat and are not destroyed by normal cooking temperatures. Prions cause disease by interacting with normal brain proteins, converting them into the misfolded prion version, leading to brain damage and neurodegenerative diseases.

21
Q

What are the structural forms of viral genomes?

A

Viral genomes can be a single molecule of nucleic acid (linear or circular) or multiple molecules of nucleic acid. The size can vary, with small genomes having only 3 genes and large viruses containing 200 to 2000 genes.

22
Q

What are the characteristics of complex viral capsids?

A

Complex viral capsids can include enzymes within their capsids, such as viral polymerase for replication. Bacteriophages, which infect bacteria, have complex structures with an elongated icosahedral head and a protein tail used for attaching to bacterial cells.

23
Q

What is the significance of viral envelopes in animal viruses?

A

Viral envelopes, derived from the host cell membrane, contain host cell phospholipids, membrane proteins, viral proteins, and glycoproteins. They aid in host infection by enabling the virus to fuse with the host cell membrane and help the virus evade the host’s immune system.

24
Q

How do viruses with helical and icosahedral capsids differ?

A

Helical capsids are rod-like and made of identical proteins arranged in a helical shape, providing rigidity and structure (e.g., TMV). Icosahedral capsids are polyhedral, made up of identical proteins organized into a capsid with 20 triangular facets, forming an icosahedron (e.g., Adenoviruses).

25
Q

What is the biological importance of viruses in research?

A

Viruses are key models in molecular biology and genetics research. They helped prove that genes are composed of nucleic acids and revealed critical processes of DNA replication, transcription, and translation. They also play a role in understanding host-pathogen interactions, immune responses, and gene editing tools like CRISPR.

26
Q

What are the steps in the viral infection process?

A

Attachment and entry: Viruses bind to host cells using specific surface proteins.
Reprogramming the host cell: The viral genome hijacks the host’s cellular machinery.
Assembly: Capsomeres and viral genomes self-assemble into complete viruses.
Exit: Newly assembled viruses exit the host cell, often causing cellular damage and death.

27
Q

What is the significance of the CRISPR-Cas system in bacterial defense?

A

The CRISPR-Cas system provides adaptive immunity by recognizing and cutting phage DNA. It stores DNA from previous phage infections and uses it to protect against future infections by the same phage. Cas proteins, guided by RNA transcribed from the CRISPR region, find and destroy the phage DNA.

28
Q

How do retroviruses like HIV replicate?

A

Retroviruses contain reverse transcriptase, which transcribes RNA into DNA. The viral DNA integrates into the host genome, becoming a permanent resident called a provirus. Host RNA polymerase transcribes the proviral DNA into RNA, which functions as mRNA for viral protein synthesis and genomes for assembling new viruses.

29
Q

What are the routes of transmission for plant viruses?

A

Plant viruses spread through horizontal transmission (from an external source, often facilitated by damage or insects) and vertical transmission (inherited from parent plants through asexual propagation or infected seeds). Within plants, viruses spread via plasmodesmata.

30
Q

What are prions and how do they cause disease?

A

Prions are infectious proteins that cause degenerative brain diseases. They act very slowly, with an incubation period of at least 10 years. Prions cause disease by interacting with normal brain proteins, converting them into the misfolded prion version, leading to brain damage and neurodegenerative diseases.

31
Q

What are the causes of emerging viral diseases?

A

Emerging viral diseases can spread from small isolated human populations or from other animals. Factors include existing viruses mutating, spreading within their current host species, or jumping to new hosts. Human and environmental factors, such as new roads, deforestation, and climate change, also contribute.

32
Q

How do influenza viruses pose a threat for pandemics?

A

Influenza type A viruses infect many animals and pose the greatest threat for pandemics. They have a segmented genome allowing reassortment during co-infection, producing new viral strains capable of spreading in humans. Mutations can result in strains gaining human-infectious capability, raising concerns over potential pandemics.