Chapter 2: Chemistry of Microbiology Flashcards
Major chemical elements needed for life
Carbon, Hydrogen, Oxygen, Nitrogen, Phosphate, Sulfur (CHONPS)
Covalent Bonding
Shared electrons, polar and non-polar
water is polar
Ionic Bonding
usually seen in salts and result from attracting due to opposite charges Na(-)Cl(+)
Hydrogen Bonding
weakest bond
helps stabilize large macromolecules
Enzymes
the substrate has a specific shape and the enzyme has a specific shape to fit the substrate to break down.
enzymes enable cells to carry out vital metabolic reactions with lower energy of activation for reactions.
recognize specific substrates
composed mainly of proteins and may be inhibited by temps., pH, excess substrate
Synthesis Chemical Reactions
“create” energy gained/absorbed (endergonic)
A+B—–energy—-> A(e)B
Decomposition Chemical Reaction
“break” energy lost/released (exergonic)
A(e)B ——-> A+B
Salts
dissociation—> water separates anions and cations
Dissociation of Acids and Bases
Measurement of acidity or alkalinity of an aqueous solution. concentration of these ions determine pH.
Acid: proton (H+) donors, the more protons the more acidic 0-7pH
Base: protons acceptors, more [OH-] 7-14 pH
blood: 7.35-7.45 pH
Moles= 6.022x10^23 avagados number
pH: -log(10) [H+]
example: -log(10)[0.0001] = -4
pH= -[-4]= 4
Organic Compounds
carbon based
biological building blocks and energy sources.
ones to study: hydroxyl, amino, phosphate, terminal carbonyl, carboxyl
Organic Compound: Hydroxyl
Structure: -OH O——H (single bond)
Class of Compounds: alcohol, monosaccaride, amino acid
Organic Compound: Carboxyl
Structure: (COOH) OH—-(-)C====O single and double bond
Class of Compounds: amino acids, proteins, fatty acid
Organic Compound: Carbonyl
Structure: CO C===O (double bonded)
Class of Compounds: Aldehyde
Organic Compound: Amino
Structure: (-NH2) H—-(-)N—–H
Class of Compounds: Amino Acid, Protein
Organic Compound: Phosphate
O
l
l
Structure: -O——–P=====OH
l
l
OH
Class of Compounds: Phospholipid, Nucleotide, ATP
Macromolecule: Carbohydrate
Function: energy sources, used for structural components
Composition: CH2O
Types: monosaccaride, disaccarides, polysaccarides
monosaccaride: glucose, frutose, galactose
disaccarides: sucrose, lactose, maltose
glucose + frutose—-energy–> sucrose + H2O (formed via dehydration
synthesis)
Polysaccarides: cellulose, starch, glycogen
Macromolecule: Lipid
Non-Polar (hydrophobic)
Fats (triglycerides; oil, grease)
Phospholipids- polar and non-polar
steriods
glycerides- glycerol + 3 fatty acids chains---->triglyceride (dehydration synthesis) saturated (not good; butter and lard/thick and heavy @ RT) and unsaturated (good fat, olive oil, canola oil, has a double bond) phospholipids: makes up part of the cell membrane steroids
Macromolecule: Proteins
Polypeptide
Functions: structure, enzymes, transport, regulations, immune response (defense and offense)
Monomer: Amino Acids- most organisms only use 21 amino acids in protein synthesis
covalent peptide bond is formed between amino acuds
Amino acid 1 + amino acid 2 —dehydration synthesis—-> dipeptide
levels of structure-
primary: chain
secondary: helix/coil
tertiary: crumpled up/folded
Quaternary: 2 or more polypeptides