Chapter 2- Basics of Living Systems Flashcards

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1
Q

How do you prepare a dry mount in sample prep?

A
  • Solid specimens are either viewed whole or cut into thin slices (sectioning)
  • Specimen is placed on the centre of slide and a coverslip is placed over a sample.
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2
Q

How do you prepare wet mount in sample prep?

A
  • specimens are suspended in liquid e.g. water/immersion oil
  • cover slip is placed on from an angle (45º)
  • e.g. aquatic sample + living organisms
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3
Q

How do you prepare squash slides in sample prep?

A
  • wet mount is first prepared
  • lens tissue is used to gently press down cover slip
  • use 2 microscope slides to avoid damage to cover slip
  • good for soft sample
  • e.g. root tip for cell division
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4
Q

How do you prepare a smear slides in sample prep?

A
  • edge of slide is used to smear sample
  • creates thin, even coating
  • cover slip is then placed over sample
  • e.g. blood smear slide.
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5
Q

Why do we use staining?

A
  • The cytosol (aqueous interior) of cells and other cell structures are often transparent
  • Stains increase contrast (different components in cell take stains to different degrees.)
  • The increase in contrast allows components to become visible so they can be identified.
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6
Q

How do positively charged dyes like “Crystal Violet” and “Methylene Blue” work?

A

-The positively charged dye is attracted to negatively charged materials in cytoplasm, leading to staining of cell components.

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7
Q

How do negatively charged dyes like “Nigrosin” or “Congo Red” work?

A

The negatively charged dye is repelled by the negatively charged cytosol.
These dyes stay outside cells, leaving the cells unstained, which then stand out against the stained background.
=Negative Stain Technique.

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8
Q

What is Fixing, Sectioning, Staining and Mounting in sample prep?

A

Fixing- chemicals like formaldehyde are used to preserve specimens in as near-natural a state as possible

Sectioning- specimens are dehydrated with alcohols and then placed in a mould with wax or resin to form a hard block. This can be sliced thinly with a microtome.

Staining- specimens are often treated with multiple stains to show different structures.

Mounting- the specimens are then secured to a microscope slide and a cover slip placed on top.

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9
Q

Describe what magnification is briefly:

A

Magnification is how many times larger the image is than the actual size of the object being viewed.

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10
Q

What is resolution in microscopy?

A

Resolution is the ability to see individual objects as separate entities.
It is limited by the diffraction of light, as it passes through samples.

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11
Q

What is the calculation for magnification?

A

Magnification = image size / actual size

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12
Q

What is an eyepiece graticule?

A
  • An eyepiece graticule is a glass disc marked with a fine scale of 1 to 100.
  • The scale has no units and remains unchanged whichever objective lens is in place.
  • The relative size of the divisions increases with each increase in magnification.
  • The scale on the graticule at each magnification is calibrated using a stage micrometer.
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13
Q

What is a stage micrometer?

A
  • A stage micrometer is a microscope slide with a very accurate scale in μm.
  • the scale marked in the micrometer slide is usually 100 divisions = 1nm, so 1 division = 10 μm.
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14
Q

How does a Transmission Electron Microscope (TEM) work?

A

In a transmission electron microscope, a beam of electrons is transmitted through a specimen and focused to produce an image.
Resolution of 0.5 nm

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15
Q

How does a Scanning Electron Microscope work?

A

In a scanning electron microscope, a beam of electrons is sent across the surface of a specimen and the reflected electrons are collected.
Resolution = 3-10 nm

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16
Q

Describe sample prep for electron microscopes:

A

Inside of electron microscope is a vacuum, so electron beams travel in a straight line.

  • Fixation using chemicals.
  • Freezing
  • Staining with heavy metals
  • dehydration with solvents
  • TEM- samples set in resin and stained again
  • SEM- fractured to expose the inside and will then need to be coated with heavy metals.
17
Q

Why do we use fixation when preparing samples for electron microscopy?

A

Fixation stablises sample and prevents decomposition.

18
Q

Why do we use dehydration when preparing samples for electron microscopy?

A

Dehydration prevents vaporisation of water in vacuum, as vaporisation would damage sample.

19
Q

Why do we embed sample in resin when preparing samples for electron microscopy?

A

Embedding allows thin slices to be obtained

20
Q

Why do we stain samples with heavy metals when preparing samples for electron microscopy?

A

Staining with heavy metals creates contrast, in electron beams.

21
Q

Describe differences between an Light microscope and electron microscope:

A

LM- inexpensive buy/easy to operate
EM- expensive/difficult to operate

LM- small + portable
EM- large, needs installation

LM- simple sample prep
EM- complex sample prep

LM- sample prep does not lead to distortion
EM- sample prep often distorts material

LM- vacuum not required
EM- vacuum required

LM- natural colour sample seen
EM- black and white images produced (can be coloured digitally)

LM- up to x2000 magnification
EM- over x500,000 magnification

LM- resolution is 200nm
EM- resolution of TEM is 0.5nm and SEM is 3-10nm

LM- specimen can be living/dead
EM- specimen dead

22
Q

What is an artefact?

A
  • An artefact is a visible structural detail caused by processing the specimen + not a feature of specimen.
  • in both Light + Electron Microscopy.
  • E.g. bubbles trapped under cover slip.
23
Q

Describe structure and function of: Nucleus

A

S:

  • largest organelle
  • spherical
  • chromatin
  • surrounded by nuclear membrane
  • nucleolus inside

F:

  • contains genetic material
  • nucleolus makes RNA and ribosomes
  • contains instructions for making proteins.
24
Q

Describe structure and function of: Rough and Smooth Endoplasmic Reticulum

A

S:

  • flattened membrane bound sacs- cisternae
  • which are continuous with outer nuclear membrane
  • contains ribosomes (only RER)

F:
RER- transports proteins made on attached ribosomes
SER- involved in making lipids

25
Q

Describe structure and function of: Golgi Apparatus

A

S:
-stack of membrane bound, flattened sacs

F:

  • receives proteins from the ER
  • modifies them, e.g. adds sugar
  • packages proteins into VESICLES to be transported inside/outside cell
  • lysosome formation
26
Q

Describe structure and function of: Mitochondria:

A

S:

  • 2 membranes separated by a fluid filled sac
  • inner membrane is folded to form cristae
  • central part is called the matrix.

F:
-site where ATP is produced during respiration,

27
Q

Describe structure and function of: Chloroplasts

A

S:

  • 2 membranes separated by fluid filled space.
  • Inner membrane is continuous with a network of thylakoids = granum.
  • chlorophyll molecules are present .

F:

  • Site of photosynthesis
  • light energy is used to derive carbohydrate molecules from CO2.
28
Q

Describe structure and function of: Lysosome

A

S:
-spherical sacs surrounded by a single membrane

F:
-contain digestive enzymes which break down materials, e.g. acrosome in head of sperm help penetrate egg.

29
Q

Describe structure and function of: ribosome

A

S:

  • small organelle in cytoplasm, bound to RER
  • two subunits

F:
-site of protein synthesis which acts as assembly line to use mRNA to assemble proteins.

30
Q

Describe structure and function of: Centrioles

A

S:
-small protein tubes of microtubules

F:
-form fibres in cell division known as spindles which separate chromosomes.

31
Q

Describe structure and function of: Plasma Membrane

A

S:

  • made of phospholipids
  • O= hydrophillic
  • | |= hydrophobic
32
Q

Describe structure and function of: Plasma Membrane

A

S:

  • made of phospholipids
  • O= hydrophilic
  • | |= hydrophobic

F:
-controls what goes in + out.

33
Q

Describe structure and function of: Cell Wall

A

S:
-made of cellulose

F:
-structure + support for cell.

34
Q

Describe structure and function of: Flagella and Cilia

A

S:
-made of protein

F:
-mobility

35
Q

Describe structure and function of: Micro Villi

A

Micro Villi are finger like projections of the epithelial cell that increase its surface area to allow more efficient absorption.

36
Q

What is the function of the cytoskeleton?

A

Function of Cytoskeleton:

  • Help support cell’s organelles
  • Help cell maintain shape
  • Transport organelles and materials within cells
  • Cause cell to move
37
Q

What are Microfilaments and what is their function?

A

Microfilaments are contractile fibres made of actin (contractile protein), responsible for cytokinesis (cell division).

38
Q

What are Microtubules and what is their function?

A

Microtubules are made of globular tubulin proteins.
Act as a track for transport of vesicles and organelles to travel around the cell.
Also make spindle fibres (polymerise to make longer tubes.)

39
Q

What is the purpose of intermediate fibres?

A

Intermediate fibres are for strength (fixed length).