Chapter 15 Flashcards
List several ways that mutations can alter the amino acid sequence of a polypeptide
Mutations can alter the amino acid sequence of a polypeptide in several ways:
Silent Mutation: One type of base is replaced by a different base; the new codon specifies the same amino acid; it causes no change in the protein function
Missense Mutation: One type of base is replaced by a different base; the new codon specifies a different amino acid; this usually has a neutral or negative outcome
Nonsense Mutation: One type of base is replaced by a different base; the new codon specifies a stop codon- causes early stop to translation and a shortened protein; this usually has a negative outcome
Frameshift Mutation: One type of base is inserted or deleted; it changes the reading frame; changes the amino acid after deletion/addition; changes protein structure and function and usually has a negative outcome
Describe examples of how mutations can cause human genetic diseases
Mutations in DNA can lead to a variety of genetic disorders. Here are some examples:
Sickle Cell Disease: This is a group of disorders that affects hemoglobin, the molecule in red blood cells that delivers oxygen to cells throughout the body. It is caused by a mutation in the HBB gene
Cystic Fibrosis: This is a progressive, genetic disease that causes persistent lung infections and limits the ability to breathe over time. It is caused by mutations in the CFTR gene
Compare and contrast the effects of mutations in somatic cells versus germ-line cells
Mutations can occur in both somatic cells and germ-line cells, and the effects of these mutations can vary significantly:
Somatic Cells:
Somatic mutations are changes to a person’s DNA that occur after conception in any cell that isn’t a germ cell (egg or sperm cell)
These mutations do not pass from parents to their children (not hereditary) and happen sporadically or randomly, without the mutation existing in a person’s family history
They also can’t pass to future generations
Changes made to somatic cells affect that person’s body alone
While somatic gene editing affects only the patient being treated (and only some of his or her cells), the possible consequences of that are difficult to predict
Germ-line Cells:
Germline mutations occur in a parent’s reproductive cells (egg or sperm). These mutations change the genetic material that the child receives from their parent (hereditary)
You can inherit germline mutations from either parent
Any alterations made to them will be passed from parent to child—affecting all future generations
Discuss the common types of DNA repair systems and list their general features
DNA repair systems are crucial for maintaining the integrity of the genetic material in cells. They correct errors that occur during DNA replication and repair damage caused by various factors. Here are some common types of DNA repair systems and their general features:
Direct Reversal Repair: This mechanism directly reverses the damage without removing the base1. It’s a simple and efficient way to correct certain types of DNA damage
Base Excision Repair (BER): This mechanism is used to fix small, non-helix-distorting base lesions, most commonly caused by oxidation or alkylation. It involves the removal of the damaged base, followed by the insertion of a correct base
Nucleotide Excision Repair (NER): This mechanism repairs bulky, helix-distorting lesions, such as those caused by ultraviolet light-induced pyrimidine dimers. It involves the removal of a short single-strand DNA segment that includes the lesion, followed by DNA synthesis to fill the gap
Outline the steps in the development of cancer
The development of cancer is a multi-step process that involves mutation and selection for cells with progressively increasing capacity for proliferation, survival, invasion, and metastasis. Here are the general steps in the development of cancer:
Initiation: This is the stage where a carcinogen enters the body and is transported into cells. Carcinogens cause cancer by permanently damaging a cell’s DNA, mutating it from a normal cell to a cancer cell. The cancer cell then replicates, and the cancer may spread to other tissues and body systems
Promotion: In this stage, the cells continue to divide, impacting nearby normal cells, often reducing the function of the affected organ. As the cells become more abnormal, they gain new capabilities, such as the ability to release growth factors and digestive enzymes
Progression: This is the final stage of cancer development where the cells gain a progressively increasing capacity for proliferation, survival, invasion, and metastasis. The cells continue to divide and grow, often reducing the function of the affected organ
Describe the function of proto-oncogenes and the mutated form, oncogenes
Proto-oncogenes are healthy genes found in cells that are responsible for making proteins involved in cell growth, division, and other processes. They contain the necessary information for your body to make the proteins responsible for stimulating cell division, inhibiting cell differentiation, and preventing apoptosis, also known as cell death. These processes are all essential for cells to maintain healthy tissues and organs in your body
However, if an error (mutation) occurs in a proto-oncogene, the gene can become turned on when it isn’t supposed to be. If this happens, the proto-oncogene can turn into a malfunctioning gene called an oncogene. Cells will start to grow out of control, which leads to cancer. Oncogenes can replicate continuously, becoming out of control. They can mutate and permanently activate as oncogenes
Identify the two general functions of the proteins encoded by tumor-suppressor genes
Tumor suppressor genes encode proteins that have two general functions:
Regulation of Cell Division: Tumor suppressor genes help regulate a complicated cellular timetable, sometimes called the cell cycle. They keep cells from dividing too fast and multiplying so quickly that they form tumors. They make sure cells, which typically live for a set time, only live as long as they’re supposed to live. This is “programmed” cell death (apoptosis)
DNA Damage Repair: Tumor suppressor genes repair DNA damage that can happen when cells divide more quickly than usual. They act to regulate cell division, keeping it in check. When a tumor suppressor gene is inactivated by a mutation, the protein it encodes does not function properly, and as a result, uncontrolled cell division may occur. Such mutations may contribute to the development of a cancer
Mutation
A mutation is a change in the DNA sequence of an organism. Mutations can result from errors in DNA replication during cell division, exposure to mutagens, or a viral infection. Germline mutations (that occur in eggs and sperm) can be passed on to offspring, while somatic mutations (that occur in body cells) are not passed on
Allele
An allele is a variant form of a gene. Some genes have a variety of different forms, which are located at the same position, or genetic locus, on a chromosome. Humans are called diploid organisms because they have two alleles at each genetic locus, with one allele inherited from each parent. If the two alleles are the same, the individual is homozygous for that allele. If the alleles are different, the individual is heterozygous. The specific version of each gene that a parent passes down to their child is known as an allele. Alleles influence the way our body’s cells work, determining traits and characteristics like skin pigmentation, hair and eye color, height, blood type, and much more
Single Nucleotide
A single nucleotide is the basic building block of nucleic acids, which include RNA and DNA. Each nucleotide is made up of three parts: a nitrogen-containing ring structure called a nitrogenous base, a five-carbon sugar, and at least one phosphate group
In the context of genetics, a single nucleotide polymorphism (SNP) is a germline substitution of a single nucleotide at a specific position in the genome that is present in a sufficiently large fraction of considered population. For example, a G nucleotide present at a specific location in a reference genome may be replaced by an A in a minority of individuals. The two possible nucleotide variations of this SNP – G or A – are called alleles
Polymorphism
Polymorphism, in the context of genetics, refers to the presence of two or more variant forms of a specific DNA sequence that can occur among different individuals or populations. The most common type of polymorphism involves variation at a single nucleotide, also called a single-nucleotide polymorphism, or SNP
Homozygous vs Heterozygous
Homozygous and heterozygous are terms used in genetics to describe the pairs of genes you inherit from your parents
If you are homozygous for a particular gene, it means you inherited the same version of that gene from both your mother and father. For example, if you inherited the gene for blonde hair from both your parents, you are homozygous for the gene that controls hair color
On the other hand, if you are heterozygous for a particular gene, it means you inherited two different versions of the gene, one from your mother and one from your father. For instance, if you inherited the gene for blonde hair from your mother and the gene for brown hair from your father, you are heterozygous
Synonymous Substitution
A synonymous substitution, often called a silent substitution, is the evolutionary substitution of one base for another in an exon of a gene coding for a protein, such that the produced amino acid sequence is not modified. This is possible because the genetic code is “degenerate”, meaning that some amino acids are coded for by more than one three-base-pair codon
Silent Substitution
A silent substitution, often called a silent mutation, is the evolutionary substitution of one base for another in an exon of a gene coding for a protein, such that the produced amino acid sequence is not modified. This is possible because the genetic code is “degenerate”, meaning that some amino acids are coded for by more than one three-base-pair codon
Nonsynonymous substitution
A nonsynonymous substitution is a type of mutation in which a change in the nucleotide sequence of a gene results in a different amino acid being incorporated during the translation of that gene. This is different from a synonymous substitution, which does not alter the amino acid sequence
Nonsynonymous substitutions can lead to changes in the protein produced, potentially altering its function. These substitutions can be further classified as conservative (a change to an amino acid with similar physiochemical properties), semi-conservative (e.g., a change from a negatively to positively charged amino acid), or radical (a change to a vastly different amino acid)
Examples:
Missense mutations
Nonsense mutations
Missense
These are nonsynonymous substitutions that arise from point mutations, mutations in a single nucleotide that result in the substitution of a different amino acid, resulting in a change to the protein encoded. Some missense mutations can alter the function of the resulting protein. However, not all missense mutations lead to significant protein changes.
Nonsense
These are nonsynonymous substitutions that result in a premature stop codon, leading to a truncated protein.
A nonsense mutation is a type of point mutation that results in a premature stop codon, or a nonsense codon, in the transcribed mRNA, and possibly a truncated, and often nonfunctional, protein product. This occurs when a sequence change in the DNA gives rise to a stop codon rather than a codon specifying an amino acid
Frameshift
A frameshift mutation is a type of gene mutation in which the addition or deletion of one or more nucleotides causes a shift in the reading frame of the codons in the mRNA. This can lead to the alteration in the amino acid sequence at protein translation
Frameshift mutations are insertions or deletions in the genome that are not in multiples of three nucleotides
Translocation
A translocation, in genetics, is a type of chromosomal abnormality where a chromosome breaks and a portion of it reattaches to a different chromosome. This mixing of genetic material can lead to important results. The resultant chromosomes may lack some genetic information and have excessive amounts of some. Many important clinical conditions like Down syndrome and chronic myelogenous leukemia result from translocation mutations
Inversion
An inversion is a type of chromosomal rearrangement in which a segment of a chromosome becomes inverted within its original position. This occurs when a chromosome undergoes two breaks within the chromosomal arm, and the segment between the two breaks inserts itself in the opposite direction in the same chromosome arm. The number of genes captured by an inversion can range from a handful of genes to hundreds of genes