Chapter 13 Flashcards

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1
Q
1) A protein is 300 amino acids long. Which of the following could be the number of nucleotides in the section of DNA that codes for this protein? (Remember: DNA is double-stranded.)
A) 3
B) 100
C) 300
D) 500
E) 1800
A

E) 1800

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2
Q

2) A short segment of an mRNA molecule is shown below. The polypeptide it codes for is also shown:
5’-AUGGUGCUGAAG : methionine-valine-leucine-lysine
Assume that a mutation in the DNA occurs so that the fourth base (counting from the 5’ end) of the messenger RNA now reads A rather than G. What sequence of amino acids will the mRNA now code for? (You do not need a copy of the genetic code to answer the question.)
A) methionine-valine-leucine-lysine
B) methionine-lysine-leucine-lysine
C) methionine-leucine-leucine-lysine
D) methionine-valine-methionine-lysine
E) methionine-methionine-leucine-lysine

A

E) methionine-methionine-leucine-lysine

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3
Q

3) The term peptidyl transferase relates to ________.
A) base additions during mRNA synthesis
B) peptide bond formation during protein synthesis
C) elongation factors binding to the large ribosomal subunit
D) discontinuous strand replication
E) 5’ capping of mRNA

A

B) peptide bond formation during protein synthesis

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4
Q
4) Which of the following are among the major components of prokaryotic ribosomes?
A) 12S rRNA, 5.8S rRNA, and proteins
B) 16S rRNA, 5.8S rRNA, and 28S rRNA
C) 16S rRNA, 5S rRNA, and 23S rRNA
D) lipids and carbohydrates
E) 18S rRNA, 5.8S rRNA, and proteins
A

C) 16S rRNA, 5S rRNA, and 23S rRNA

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5
Q

5) The one-gene:one-enzyme hypothesis emerged from work on which two organisms?
A) E. coli and yeast
B) Drosophila and humans
C) Neurospora and Drosophila
D) E. coli and humans
E) All of the answers listed are correct.

A

C) Neurospora and Drosophila

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6
Q

6) By their experimentation using the Neurospora fungus, Beadle and Tatum were able to propose the far-reaching hypothesis that ________.
A) prototrophs will grow only if provided with nutritional supplements
B) several different enzymes may be involved in the same step in a biochemical pathway
C) the role of a specific gene is to produce a specific enzyme
D) genetic recombination occurred in Neurospora
E) more than one codon can specify a given amino acid

A

C) the role of a specific gene is to produce a specific enzyme

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7
Q

7) The β chain of adult hemoglobin is composed of 146 amino acids of a known sequence. In comparing the normal β chain with the β chain in sickle cell hemoglobin, what alteration is one likely to find?
A) valine instead of glutamic acid in the sixth position
B) glutamic acid replacing valine in the first position
C) extensive amino acid substitutions
D) trinucleotide repeats
E) frameshift substitutions

A

A) valine instead of glutamic acid in the sixth position

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8
Q

8) The primary structure of a protein is determined by ________.
A) the sequence of amino acids
B) hydrogen bonds formed between the components of the peptide linkage
C) a series of helical domains
D) pleated sheets
E) covalent bonds formed between fibroin residues

A

A) the sequence of amino acids

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9
Q
9) Which protein class directly controls many of the metabolic reactions within a cell?
A) structural proteins
B) repressor proteins
C) operator proteins
D) enzymes
E) hydrophilic proteins
A

D) enzymes

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10
Q
10) The secondary structure of a protein includes \_\_\_\_\_\_\_\_.
A) gamma and delta
B) alpha and gamma
C) α-helix and β-pleated sheet
D) hydrophobic clusters
E) disulfide bridges
A

C) α-helix and β-pleated sheet

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11
Q
11) Side groups of amino acids are typically classified under which of the following?
A) polar, nonpolar
B) linear, circular
C) alpha, omega
D) long, short
E) primary, secondary
A

A) polar, nonpolar

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12
Q

12) Describe each of the following parameters that relate to the structure and function of tRNA:
(a) four functional domains

A

(a) The four functional domains are amino acid attachment site, ribosome binding site, anticodon, and aminoacyl synthetase binding site.

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13
Q

12) Describe each of the following parameters that relate to the structure and function of tRNA:
(b) Wobble hypothesis

A

(b) The Wobble hypothesis states that the first two positions of the codon are precise in their complementary relationships. However, the third position is less specific.

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14
Q

13) Assume that a base addition occurs early in the coding region of a gene. Is the protein product of this gene expected to have more or fewer altered amino acids compared with the original gene with a base deletion late in the coding region?

A

More

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15
Q

14) During translation, which triplets signal chain termination?

A

UAA, UGA, UAG

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16
Q

17) Knowing that the base sequence of any given messenger RNA is responsible for precisely ordering the amino acids in a respective protein, present two mechanisms by which intrinsic properties of mRNA may regulate the “net output” of a given gene.

A

(a) Final output of a given gene may be influenced by the stability of an mRNA, and stability of an mRNA is determined in part by its base content and sequence. (b) Differential splicing of mRNA (actually mRNA precursors) can influence how much of a given product will be made from a gene.

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17
Q

18) Three major types of RNAs are mRNA, rRNA, and tRNA. For each of the conditions below, predict the consequences in terms of the population of proteins being synthesized in a particular cell. What qualitative and quantitative changes, if any, are expected in the individual protein involved (if one is involved) and in the population of proteins in this cell?

A

(a) Population of proteins: Half of the protein products of that gene will be defective, and the other half will be normal. Individual protein: The protein should show multiple amino acid substitutions “downstream” from the point of the mutation. If a nonsense triplet is introduced, the protein will be shortened in the substituted region.
(b) Population of proteins: There would be an overall reduction in protein synthesis. Individual proteins: All of the proteins would be made in their normal form but at reduced levels.

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18
Q

19) What are polyribosomes?

A

clusters of ribosomes held together by an mRNA

19
Q

20) Early in the 1900s, Sir Archibald Garrod studied a number of metabolic defects in humans. One particular disorder involved the inability to metabolize homogentisic acid. What is the name of this disorder?

A

alkaptonuria

20
Q

23) Describe the conceptual basis for constructing biochemical pathways using nutrient supplement experiments with Neurospora.

A

The substance that when added to minimal medium “cures” the largest number of strains must be toward the end of the pathway. A supplement that fails to “cure” many strains must be early in the pathway.

21
Q

26) Much has been learned about the relationship between genes and gene products through the use of the mold Neurospora. What specific attributes make Neurospora a good organism for such studies?

A

knowledge of its biochemistry, its haploid ascospores, relative ease of isolating nutritional mutations

22
Q

27) Nutritional mutants in Neurospora can be “cured” by treating the medium with substances in the defective metabolic pathway. What determines whether the mutant strain (auxotroph) is “cured” by a particular substance?

A

The substance needs to be added after the metabolic block in the biochemical pathway.

23
Q

28) Studies of Neurospora led to the ________ statement, whereas studies of human hemoglobin led to the ________ statement.

A

one-gene:one-enzyme; one-gene:one-polypeptide

24
Q

29) A procedure that is often used to separate molecules by using their molecular charges is called ________.

A

electrophoresis

25
Q

30) Electrophoretic separation of HbA from HbS is based on a difference in their ________.

A

charges

26
Q

31) Describe the basic structure of normal adult hemoglobin and the abnormality observed in sickle-cell hemoglobin.

A

The predominant form of adult hemoglobin is composed of two α and two β chains. In sickle-cell hemoglobin, the sixth amino acid in the β chain is valine instead of glutamic acid.

27
Q

32) What is the general ethnic distribution of the sickle-cell gene?

A

The gene is most common among the African American population

28
Q

33) What is the structure of HbF, fetal hemoglobin?

A

two α and two γ chains

29
Q

34) In what ways do the amino acid side chains interact to influence protein function?

A

Higher-level folding of proteins is dependent on a variety of interactions (ionic, covalent, hydrogen, hydrophobic, hydrophilic, etc.), which determine the functional three-dimensional structure of proteins.

30
Q

35) Below are several phenomena relating to protein structure. Clearly describe each phenomenon, the conditions under which each occurs, and the probable influence each has on protein structure.
(a) hydrophobic interactions

A

(a) Hydrophobic interactions: These are nonpolar side chains of amino acids that tend to associate to form hydrophobic clusters usually away from the protein surface.

31
Q

35) Below are several phenomena relating to protein structure. Clearly describe each phenomenon, the conditions under which each occurs, and the probable influence each has on protein structure.
(b) hydrogen bonds

A

(b) Hydrogen bonds: Such bonds may occur between the components of the peptide bond, the side chains, or a combination of the two. They are responsible for helical and pleated sheet structures of proteins.

32
Q

35) Below are several phenomena relating to protein structure. Clearly describe each phenomenon, the conditions under which each occurs, and the probable influence each has on protein structure.
(c) disulfide bridges

A

(c) Disulfide bridges: Such bonds are formed between two cysteine side chains and, because of their covalent nature, represent relatively strong attractive forces between different (sometimes distant) regions of proteins.

33
Q

36) Assuming that an amino acid sequence is 250 amino acids long, how many different molecules, each with a unique sequence, could be formed?

A

20 to the 250th power

34
Q

37) Regarding the protein structure, how are β-pleated sheets arranged and stabilized?

A

Several chains run in parallel or antiparallel fashion stabilized by hydrogen bonds formed between components of the peptide linkage.

35
Q

38) Considering the types of side chains on amino acids and their relationship to protein structure, where are the amino acids with hydrophobic side chains most likely to be located?

A

away from the water environment and in the interior portion of the molecule

36
Q

39) The ribonucleic acid components known to exist in eukaryotic ribosomes are the following: 5.8S, 18S, 28S, and 5S.

True or False

A

True

37
Q

40) rDNA is the portion of a genome that is involved in the production of ribosomal RNA.

True or False

A

True

38
Q

41) Prokaryotic and eukaryotic ribosomes are structurally and chemically identical.

True or False

A

False

39
Q

42) When a metabolic block occurs in a biochemical pathway, it is common for the amount of the substance immediately prior to that block to increase.

True or False

A

True

40
Q

43) Sickle-cell anemia is caused by the absence of the alpha chain of hemoglobin.

True or False

A

False

41
Q

44) Proteins are composed of strings of nucleotides connected by 5’-3’ phosphodiester bonds.

True or False

A

False

42
Q

45) The secondary structure of a protein is dependent on polar interactions among the side chains of the amino acids.

True or False

A

False

43
Q

46) The primary structure of a protein is composed of the sequence of amino acids in that protein.

True or False

A

True