Chapter 12 Flashcards

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1
Q

1) The genetic code is said to be triplet, meaning that there ________.
A) are three amino acids per base in mRNA
B) are three bases in mRNA that code for an amino acid
C) may be three ways in which an amino acid may terminate a chain
D) are three “nonsense” triplets
E) None of the answers listed is correct.

A

B) are three bases in mRNA that code for an amino acid

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2
Q
2) A class of mutations that results in multiple contiguous (side-by-side) amino acid changes in proteins is probably caused by which one of the following types of mutations?
A) frameshift 
B) transversion
C) transition
D) base analog
E) recombinant
A

A) frameshift

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3
Q

3) When scientists were attempting to determine the structure of the genetic code, Crick and coworkers found that when three base additions or three base deletions occurred in a single gene, the wild-type phenotype was sometimes restored. These data supported the hypothesis that ________.
A) the code is triplet
B) the code contains internal punctuation
C) AUG is the initiating triplet
D) the code is overlapping
E) there are three amino acids per base

A

A) the code is triplet

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4
Q

4) Significant in the deciphering of the genetic code was the discovery of the enzyme polynucleotide phosphorylase. What is this enzyme used for?
A) manufacture of synthetic RNA for cell-free systems
B) ribosomal translocation
C) peptide bond formation
D) production of ribosomal proteins
E) degradation of RNA

A

A) manufacture of synthetic RNA for cell-free systems

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5
Q

5) In 1964, Nirenberg and Leder used the triplet binding assay to determine specific codon assignments. A complex of which of the following components was trapped in the nitrocellulose filter?
A) ribosomes and DNA
B) free tRNAs
C) charged tRNA, RNA triplet, and ribosome
D) uncharged tRNAs and ribosomes
E) sense and antisense strands of DNA

A

C) charged tRNA, RNA triplet, and ribosome

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6
Q
6) What is the initiator triplet in both prokaryotes and eukaryotes? Which amino acid does this triplet recruit? 
A) UAA; no amino acid called in
B) UAA or UGA; arginine
C) AUG; arginine
D) AUG; methionine
E) UAA; methionine
A

D) AUG; methionine

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7
Q

7) When examining the genetic code, it is apparent that ________.
A) there can be more than one amino acid for a particular codon
B) AUG is a terminating codon
C) there can be more than one codon for a particular amino acid
D) the code is ambiguous in that the same codon can code for two or more amino acids
E) there are 44 stop codons because there are only 20 amino acids

A

C) there can be more than one codon for a particular amino acid

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8
Q

8) Introns are known to contain termination codons (UAA, UGA, or UAG), yet these codons do not interrupt the coding of a particular protein. Why?
A) UAA, UGA, and UAG are initiator codons, not termination codons.
B) Exons are spliced out of mRNA before translation.
C) These triplets cause frameshift mutations, but not termination.
D) More than one termination codon is needed to stop translation.
E) Introns are removed from mRNA before translation

A

E) Introns are removed from mRNA before translation

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9
Q
9) What is the name given to the three bases in a messenger RNA that bind to the anticodon of tRNA to specify an amino acid placement in a protein?
A) protein
B) anti-anticodon
C) cistron
D) rho
E) codon
A

E) codon

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10
Q
10) The genetic code is fairly consistent among all organisms. The term often used to describe such consistency in the code is \_\_\_\_\_\_\_\_.
A) universal
B) exceptional
C) trans-specific
D) overlapping
E) None of the answers listed is correct
A

A) universal

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11
Q

11) The relationship between a gene and a messenger RNA is that ________.
A) genes are made from mRNAs
B) mRNAs are made from genes
C) mRNAs make proteins, which then code for genes
D) genes are structurally identical to mRNAs
E) mRNA is directly responsible for making Okazaki fragments

A

B) mRNAs are made from genes

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12
Q
12) When considering the initiation of transcription, one often finds consensus sequences located in the region of the DNA where RNA polymerase(s) binds. Which of the following is a common consensus sequence?
A) TATA 
B) GGTTC
C) TTTTAAAA
D) any trinucleotide repeat
E) satellite DNAs
A

A) TATA

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13
Q

13) It has been recently determined that the gene for Duchenne muscular dystrophy (DMD) is more than 2000 kb (kilobases) in length; however, the mRNA produced by this gene is only about 14 kb long. What is a likely cause of this discrepancy?
A) The exons have been spliced out during mRNA processing.
B) The DNA represents a double-stranded structure, whereas the RNA is single-stranded.
C) More amino acids are coded for by the DNA than by the mRNA.
D) The introns have been spliced out during mRNA processing.
E) When the mRNA is produced, it is highly folded and therefore less long.

A

D) The introns have been spliced out during mRNA processing.

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14
Q

14) An intron is a section of ________.
A) protein that is clipped out posttranslationally
B) RNA that is removed during RNA processing
C) DNA that is removed during DNA processing
D) transfer RNA that binds to the anticodon
E) carbohydrate that serves as a signal for RNA transport

A

B) RNA that is removed during RNA processing

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15
Q
15) Which of the following two terms relate most closely to split genes?
A) 5'-cap, 3'-poly-A tail
B) introns, exons
C) elongation, termination
D) transcription, translation
E) heteroduplex, homoduplex
A

B) introns, exons

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16
Q

16) Which of the following contains the three posttranscriptional modifications often seen in the maturation of mRNA in eukaryotes?
A) 5’-capping, 3’-poly(A) tail addition, splicing
B) 3’-capping, 5’-poly(A) tail addition, splicing
C) removal of exons, insertion of introns, capping
D) 5’-poly(A) tail addition, insertion of introns, capping
E) heteroduplex formation, base modification, capping

A

A) 5’-capping, 3’-poly(A) tail addition, splicing

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17
Q
17) If one compares the base sequences of related genes from different species, one is likely to find that corresponding \_\_\_\_\_\_\_\_ are usually conserved, but the sequences of \_\_\_\_\_\_\_\_ are much less well conserved.
A) exons; introns
B) introns; exons
C) introns; chaperons
D) chaperons; exons
E) introns; proteins
A

A) exons; introns

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18
Q
18) In which cellular organelle do the three posttranscriptional modifications often seen in the maturation of mRNA in eukaryotes occur?
A) nucleus
B) cytoplasm
C) mitochondrion
D) lysosome
E) Golgi
A

A) nucleus

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19
Q

19) Describe the direction of information flow in living systems. Use appropriate, scientific terms in your description.

A

DNA is replicated and passed to offspring through reproductive processes. Information contained in DNA is transcribed into a variety of RNAs. Certain RNAs (tRNA) carry amino acids to the site of translation where proteins are assembled. mRNA provide a mechanism for ordering the sequence of amino acids in proteins.

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20
Q

20) Sidney Brenner argued that the code was nonoverlapping because he considered that coding restrictions would occur if it were overlapping. A second major argument against an overlapping code involved the effect of a single nucleotide change. In an overlapping code, how many adjacent amino acids would be affected by a point mutation? In a nonoverlapping code, how many amino acid(s) would be affected?

A

two; one

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21
Q

21) What is a nonsense mutation?

A

a termination triplet that occurs in the coding region of a gene

22
Q

22) From the late 1950s to the mid-1960s, numerous experiments using in vitro cell-free systems provided information on the nature of the genetic code. Briefly outline significant experiments in the determination of the genetic code.

A

Use of polynucleotide phosphorylase for the random assembly of nucleotides provided for the assembly of RNA homo- and random heteropolymers, which when placed in the cell-free protein-synthesizing system provided products (polypeptide chains) for analysis. The triplet binding assay along with the use of repeating copolymers was used to verify information provided earlier and to establish the ordered codon assignments

23
Q

24) What two experimental procedures allowed deciphering of the ordered triplet assignments of the genetic code?

A

the triplet binding assay and the use of repeating RNA polymers with known sequence

24
Q

25) “Breaking the genetic code” has been referred to as one of the most significant scientific achievements in modern times. Describe (in outline or brief statement form) the procedures used to break the code.

A
  • use of polynucleotide phosphorylase for the production of synthetic mRNAs
  • introduction of synthetic mRNAs into the cell-free protein-synthesizing system
  • frameshift mutations in the rII region of T4 phage to show code is triplet and degenerate
  • triplet binding assay to produce mRNA—tRNA-ribosome complex
  • development of regular copolymers for use in the cell-free protein-synthesizing system
25
Q

26) A base at the first position of an anticodon on the tRNA would pair with a base at the ________ position of the mRNA.

A

third

26
Q

27) The relationship between codon and anticodon can be characterized as involving ________.

A

hydrogen bonds between complementary bases (usually) in typical antiparallel fashion

27
Q

28) Of the following three types of nucleic acids—DNA, mRNA, tRNA—which is most likely to contain modified bases?

A

tRNA

28
Q

29) Describe the function of N-formylmethionine in prokaryotes.

A

N-formylmethionine is a modified amino acid, which serves as the starting amino acid in protein synthesis.

29
Q

30) What is meant by punctuation in terms of the genetic code?

A

Certain triplets (AUG) commonly signal the starting point for protein synthesis; other triplets (UAA, UGA, UAG) typically signal stop.

30
Q

31) There is some indication that the code is in some way ordered; a certain pattern exists. Describe an observation that supports this view.

A

Certain amino acids may be grouped according to the middle base; for example, U or C in the second position often specifies hydrophobic amino acids. Also, codons with the same two starting letters frequently encode the same amino acid.

31
Q

32) List four base triplets that are clearly responsible for punctuation (initiation, termination).

A

AUG (rarely GUG) for initiation; UAA, UGA, and UAG for termination

32
Q

33) The finding that virtually all organisms use the same genetic code provides the basis for declaring that the code is universal. Name at least two exceptions to such universality.

A

mitochondrial DNA, Mycoplasma capricolum, some protozoans

33
Q

34) Referring to the genetic code, what is meant by “wobble”?

A

relaxed pairing specificities in the third-base position of a codon

34
Q

35) In the context of molecular genetics, how does one reconcile the terms overlapping genes and nonoverlapping code?

A

The genetic code contains codons that are nonoverlapping; however, overlapping genes are observed in some viruses in which, due to differential use of AUG to initiate translation, the same mRNA can yield different protein products

35
Q

36) What is polycistronic mRNA?

A

Polycistronic mRNA is seen primarily among prokaryotes in which one mRNA carries coding information and internal punctuation for the translation of more than one protein.

36
Q

37) Describe how the sigma subunit (factor) of E. coli RNA polymerase participates in transcription.

A

The sigma subunit may give specificity to the RNA polymerase and play a regulatory function. It may be involved in the recognition of initiation sites or promoters.

37
Q

38) Regarding the efficient initiation of transcription by RNA polymerase II, which specific “upstream” signals appear to be involved?

A

TATA and CAAT base sequences and enhancers

38
Q

39) Describe a difference between the RNA polymerases of eukaryotes and prokaryotes.

A

In eukaryotes, three polymerases (I, II, III) have been identified; only one has been described in prokaryotes.

39
Q

40) What is meant by the term heterogeneous nuclear RNA (hnRNA)?

A

pre-mRNA, primary transcripts before processing in eukaryotes

40
Q

41) In eukaryotes, which three factors appear to encourage the specific association of RNA polymerase(s) to a specific region of DNA?

A

promoters, enhancers, and transcription factors

41
Q

42) The code is nonoverlapping, meaning that, assuming “standard translation,” a given base participates in the specification of one and only one amino acid.

True or False

A

True

42
Q

43) The enzyme polynucleotide phosphorylase is capable of generating a random assembly of ribonucleotides.

True or False

A

True

43
Q

44) The triplet AUG is commonly used as a start codon during translation.

True or False

A

True

44
Q

45) Messenger RNA is usually polycistronic in eukaryotes.

True or False

A

False

45
Q

46) Heterogeneous nuclear RNA is a primary transcript in eukaryotes that is processed prior to involvement in translation.

True or False

A

True

46
Q

47) An intron is a section of an RNA that gets spliced out.

True or False

A

True

47
Q

48) Transcription factors function to help move ribosomes along the mRNA.

True or False

A

False

48
Q

49) RNA processing occurs when amino acids are removed from nascent proteins.

True or False

A

False

49
Q

50) A 3’ poly-A tail and a 5’-cap are common components of prokaryotic RNAs.

True or False

A

False

50
Q

51) A 5’-cap describes the addition of a base, usually thymine, to the 5’ end of a completed peptide.

True or False

A

False