Chapter 1 biology Flashcards

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1
Q

The human body contains approximately how many cells?

A

Approximately 37 trillion cells

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2
Q

Bacterial cells outnumber Eukaryotic cells by about how much?

A

Bacterial cells outnumber Eukaryotic cells by about 10 to 1.

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3
Q

Prior to 1600, how was the organism perceived/viewed? why?

A

Complete and inseparable into smaller parts.

Due to the inability to see smaller structures through simple instruments like magnifying glass (IE: microscopes were not invented yet).

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4
Q

In 1665, What did Robert Hooke assemble and tested? What did he notice? What he was not able to see

A

Robert Hooke assembled a compound microscope and tested its properties on a piece of cork.

He noticed a honeycomb-like structure and compared the spaces within the cork to small rooms of a monastery, known as cells.

Because the cork consists of non-living cells, Hooke was not able to see a nuclei, organelles, or cell membrane.

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5
Q

In 1674, what did Anton Van Leeuwenhoek do? What did researchers later noticed?

A

Anton Van leewenhoek was the first to see a living cell under a microscope.

Cells could be separated and each cell is considered a distinct structure.
They also found that tissues were made of cells, and the function of a tissue is dependent on the function of the cells that make up the tissue.

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6
Q

In 1850, what did Rudolph Virchow reveal?

A

Diseased cells could arise from the normal cells in a normal tissue.

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7
Q

What are the 4 tenets/principles of the cell theory?

A

1) The cell is the basic functional unit of life

2) All living things are composed of cells

3) Cells arise ONLY from pre-existing cells

With advances in molecular biology, the 4th tenet/principal was added:

4) Cells carry genetic information in the form of DNA (deoxyribonucleic acid) and it is passed on from the parent cell to the daughter cell.

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8
Q

What is definition of a virus? Explain violates which of the tenets/principles of the cell theory and why?

A

Small structures that contain its own genetic material, but unable to reproduce on their own.

Accordingly, it violates the 3rd and 4th principles ( cells arise from pre-existing cells and cells carry genetic material in the form of DNA). This is because
- virions can only replicate by invading other organisms (IE: cells)
- and because they use RNA (ribonucleic acid) as their genetic information.

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9
Q

Distinguish between Eukaryotic cells and Prokaryotic cells?

A

Eukaryotic: 1) Can be unicellular or multicellular. 2) Contain a true nucleus and organelles enclosed in a membrane. (It also have cell membrane, also known as plasma membrane, that separates the cell from the outside environment)

Prokaryotic cells: 1) Always unicellular (single celled). 2) Does not contain a nucleus or organelles enclosed in a membrane. (It also have cell membrane, also known as plasma membrane, that separates the cell from the outside environment)

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10
Q

Differentiate between cytoplasm and cytosol, and mention where are the organelles found?

A

Both prokaryotic and eukaryotic cells have a cell membrane (plasma membrane). This cell membrane encloses the cytoplasm, where the cytosol is the semifluid substance of the cytoplasm in which the organelles are suspended/floating in it.

The difference is that in Eukaryotic cells the organelles are membrane bound, while in Prokaryotic cells the organelles are not membrane bound.

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11
Q

Describe the plasma membrane (IE: cell membrane) of Eukayoric cells?

A

Membranes of eukaryotic cells consists of single phospholipid bilayer. This basically means that its external surfaces are hydrophilic (loves water, and thus electrostatically interacting with the aqueous environments inside and outside the cell) and its inner portion is hydrophobic (hates water, and thus provide a highly selected barrier between the interior of the cell and the external environment).

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12
Q

VIP notes:

A

1) Cytosol allows for diffusion of molecules throughout the cells with the help of cytoskeleton.

2) Within the nucleus, genetic material is encoded in DNA (deoxy-ribo-nucleic acid), which are organized into chromosomes and this genetic material is processed for the replication of the cell.

3) Eukaryotic cells reproduce by mitosis, allowing the formation of two identical daughter cells. Prokaryotic cells reproduce by binary diffusion.

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13
Q

What is the nucleus surrounded by? Describe it?

A

The nucleus is surrounded by the nuclear membrane or the envelope.
Which is a double phospholipid bilayer membrane (inner membrane and outer membrane) that separates the nuclear environment from the cytoplasm environment.

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14
Q

What are genes, histones, and chromosomes?

A

Genes: coding regions of the DNA (that will code for proteins)
Histones: Linear DNA wound around organizing proteins called histones (beads on a string).
Chromosomes: The DNA then further wound into linear strands called chromosomes.

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15
Q

what is the nucleolus? It takes how much of the entire nucleus volume and identified by what?

A

A subsection of the nucleus, where rRNA is synthesized (ribosomal RNA). It is also the ribosomes factory.

Takes up approximately 25% of the entire nucleus volume and can be identified by the darker spot in the nucleus.

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16
Q

What are the nuclear pores?

A

Small pores in the nuclear membrane that allows a two-way selective exchange of material between the cytoplasm and the nucleus.

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17
Q

What is considered the “power plants of the cell” in reference to their impotant metabolic functions?

A

Mitochondria

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18
Q

What are the two membranes in the mitochondria and describe their functions?

A

Outer membrane: serves as a barrier between cytosol of the cell and the inner environment of the mitochondria (basically the inter-membrane space)

Inner membrane: arranged in numerous foldings called **cristae **and contains the molecules and enzymes of the electron transport chain (the process that creates ATP molecules).

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19
Q

What does the numerous foldings (called cristae) of the inner-membrane provide?

A

Increase the surface area available for electron transport chain enzymes.

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20
Q

What is the Inter-membrane space and the Mitochrondrial matrix?

A

The space between the outer membrane and inner membrane is called the Inter-membrane space, while the space inside the inner membrane (where the mitochrondial DNA and the molecular complex reside in it) is called the Matrix.

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21
Q

What does it mean for the mitochondria to be a semi-autonomous organelle?

A

This means that it is an organelle that contain its own double stranded-circular DNA (genes) and replicate independently of the nucleus by binary diffusion.

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22
Q

What is meant by cytoplasmic or extranuclear inheritance?

A

Transmission of genetic material to daughter cell independent of the nucleus

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23
Q

What does the Serial Endosymbiosis Theory explains? What does the thoery itself state?

A

It is the theory that explains the formation of some of the membrane-bound organelles (mitochondria, Chloroplasts in plants, and organelles of motility like flagella)

It posits that these organelles formed by the engulfing of one aerobic prokaryotic cell by anerobic prokaryotic cell and, thus, established a symbiotic relationship.

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24
Q

what is the other function of the mitochondria?

A

Killing the main cell by releasing enzymes from the electron transport chain in order to initiate an Apoptosis process (programmed cell death).

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25
Q

what are lysosomes?

A

membrane-bound structures that contain hydrolytic enzymes that digest many substrates, including ingested substances by endocytosis and cellular wastes.

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26
Q

The release of the hydrolytic enzymes occur in a process called what? what happens after its release?

A

The release of the hydrolytic enzymes occur in a process called autolysis.

Like mitochondria, when the lysosome release these enzymes it results initiate an apoptosis process , but here it leads to the degradation of invading or cellular components only (not the whole cell).

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27
Q

What are endosomes? What are the places that endosomes can transport material to and from?

A

Lysosomes often function in conjunction with endosomes, which are vesticle structures that transport, package, and sort material traveling to and from the cell membrane.

Endosomes can transport materials to the trans-golgi, cell membrane, or to the lysosomal pathway for degradation.

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28
Q

Describe Endoplasmic reticulum (ER)?

A

Series of double interconnected membranes that are continguous with the nuclear envelope.

The double membrane is folded in numerous invaginations, creating complex structure with a central lumen.

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29
Q

What are the two types of Endoplasmic reticulum? State the function of each one?

A

Rough ER: have ribosomes, which allow for the translation of proteins destined for secreation into the Rough ER lumen.

Smooth ER: Lack ribosomes, but it is responsible for:
1) Lipid synethesis (like the phospholipids of the cell membrane)
2) Detoxification of certain drugs and poisins.
3) It also transport the proteins from the Rough ER to the Golgi Apparatus.

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30
Q

What is Golgi apparatus?

A

A structure that consists of stacked membrane-bound sacs

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31
Q

What are the 4 functions of Golgi apparatus?

A

1) Transport vesicles bring proteins and lipids from the ER (either rought or smooth)
2) In the golgi apparatus cristae, the products are modified by the addition of groups like carbohydates, phosphates, and sulfates.
3) The golgi apparatus then sort the products by introduction of signal sequences, which help to direct the delivary of products to the target cellular location.
4) After modification and sorting, the products are repackaged into secratory vesicles and then leaves the golgi apparatus to either go to a particular location in the cell (can also be the lysosome for degradation if there is excess or if there is malfunctioning in the product) or to be secreted out of the cell by the process of exocytosis.

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32
Q

What are Peroxisomes? 3 functions?

A

Structure in the cell containing hydrogen peroxide, that:
1) Breakdown long fatty acids via B-oxidation
2) Participate in synthesis of phosolipids and detoxification of harmful substances (like smooth ER).
3) Contain some of the enzymes involved in the pentose phosphate pathway.

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33
Q

What are the 4 functions of cytoskeleton?

A

1) Provides structure to the cell and helps it to maintain its shape
2) Provides pathway for the transport of materials and organelles around the cell.
3) Assists in cell division
4) Aids in the movement of the cell.

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34
Q

What are the three components of cytoskeleton?

A

Microtubules
Microfilaments
Intermediate filaments

35
Q

Describe the structure of microfilaments? Resistant to what?

A

Made up of two solid rods of actin protein and organized into bundles.

Resistant to both compression and fracture, and thus provide protection to the cell

36
Q

2 Funtions of microfilaments?

A

1) During muscle contraction, actin filaments uses ATP to generate force for movement by interacting with myosin
2) Play a role in cytokinesis (division of material between the two daughter cells), as the cleavage furrow is formed from microfilaments, where as the actin filament contract the cleavage furrow ring becomes smaller and eventually pinch off the connection between the two daughter cells.

37
Q

Describe the struture of microtubules?

A

Hollow polymers of tubulin protein

38
Q

2 Functions of microtubulins?

A

1) Provide pathway along which motor proteins, like kinesis and dynenin, carry vesicles.
2) Cilia and flagella are motile structures made up of microtubules

39
Q

Describe the Cilia and Flagella?

A

Cilia: projections from a cell that are primarily involved in the movement of materials along the surface of the cell

Flagella: Structures involved in the movement of cell itself.

40
Q

What is the **9+2 structure **of cilia and flagella?

A

Both cilia and flagella shape similar structure (9+2 structure): composed of nine pairs of microtubules (A tubule and B tubule) forming an outer ring and another two microtubules in the center surrounded by inner sheath.

This structure is seen only in eurkayotic organelles of motalilty.

41
Q

What is the centrosome and centrioles? Describe the structure of centrioles?

A

Centrosome is a region in the cell that contain the organizing centers for microtubules known as centrioles.

A single Centriole is structured as nine triplets of microtubules with a hollow center.

42
Q

Describe the structure of intermediate filaments?

A

Diverse group of filamentous proteins, including:
1) Keratin
2) Desmin
3) Vimentin
4) Lamins.

43
Q

4 Functions of intermediate filaments?

A

1) Involved in cell-cell adhesion
2) Maintaince of the overall integrity of cytoskeleton
3) Help anchor organelles and nuclues
4) Provide structural rigidity to the cell.

44
Q

What are the 4 types of tissues?

A

Epithelial
Connective
Muscle
Nervous

45
Q

2 functions of epithelial tissue?

A

1) Cover the body and line its cavities, which protein against pathogen invasion and desiccation.
2) Some epithelial cells absorb and secrete substances or participate in sensation.

46
Q

What does epithelial cells form in most organs?

A

In most organs, epithelial cells form the parenchyma (functional parts of the organ)

47
Q

What does it mean for epithelial tissue to be polarized?

A

One side facing the lumen (hollow inside of an organ or tube) or the outside world, while the other side interacts with the underlying blood vessels and structural cells.

48
Q

How to classify epithelial tissue?

A

By number of layers:
1) Simple epithelia: single layer of cells
2) Stratified epithelia: double layer of cells
3) Pseudostratified epithelia: appear to be double layers due to the different heights of the cells, but it is actually a single layer

By shape of the cell:
1) Cuboidal cells: cube-shaped
2) Columnar cells: long and thin
3) Squamous cells: Flat and scale-like

49
Q

2 functions of connective tissue?

A

1) support the body and provide framework for epithelial cells (basement membrane: underlying layer of connective tissue that keep the epithelial cells tightly joined to each other)
2) Form the stroma or support structure by secreting materials (collagen and elastin) to form an extraceullar matrix.

50
Q

Examples of connective tissue?

A

Bones
Cartilage
Tendons
Ligaments
Blood vessels

51
Q

Describe the genetic material of prokaryotes and where it is located in the cell?

A

A single circular molecule of DNA concentrated in an area of the cell called the nucleoid region.

52
Q

What are the three domains of life? Which of these domains contain prokaryotes?

A

Three overarching domains into which all life is classified into:
* Archaea
* Bacteria
* Eukarya

Prokayotes: Archaea and bacteria
Eurkayotes: Eukarya

53
Q

What is the kingdom name of Archae and Bacteria?

A

Kingdom of Monera

54
Q

How is arachea similar to bacteria and similar to eukaryotes?

A

Visually similar to bacteria, but contain genes and several metabolic pathways more similar to eukaryotes than to bacteria.

55
Q

What does it mean for Archaea to be considered extremophiles?

A

They most commonly live in harch environments with extremely high temperature, high salinity, or no light.

56
Q

How does archaea use alternative sources of energy?

A

Some are photosynthetic, while many are chemosynthetic and can generate energy from inorganic compounds, including sulfur and nitrogen based compounds like ammonia.

57
Q

How is archae considered similar to Eukaryotes? 4 things.

A

1) It is hypothized that both share a common origin
2) Both start translation with methionine
3) Both contain similar RNA polymerases
4) Both associate their DNA with histones

58
Q

Describe the structure of bacteria?

A

All bacteria contain a cell membrane and cytoplasm. Some have flagella or fimbriae (similar to cilia in eukaryotes).

59
Q

What are the two types of relationships that can exist between human body and bacteria? give examples to each?

A

Some bacteria are mutualistic symbiotes, meaning that both the human body and bacteria benefit from each other. EXAMPLE: bacteria in human gut that produce vitamin K and biotin (vitamin B7) and also help to prevent the overgrowth of harmful bacteria

Some bacteria are Pathogens or parasites, meaning that they provide no benefit but harm (disease) to the human body.
EXAMPLE: Chlamydia trachomatis, bacteria that lives inside the cells of reproductive tracts. Clostridium tetani, bacteria that lives outside the cells and products toxins that enter the blood stream and cause tetanus.

60
Q

What are the three shapes that can be used to classify bacteria? Give example to each one?

A
  • Cocci: spherical bacteria; streptococcus pyogenes
  • Bacilli: Rod-shaped bacteria; Escherichia Coli
  • Spirilli: Spiral-shaped bacteria; Treponema Pallidum
61
Q

What is the meant when we say this type of bacteria is obligate aerobes?

A

It means that the bacteria can survive in an oxgyen-containing environment and needs oxygen for its own metabolism.

62
Q

What are anaerobes bacteria?

A

Bacteria that use fermentation, or other form of cellular metabolism, that does not require oxygen.

63
Q

What are obligate anaerobes? what can it results in if there is oxygen?

A

Anaerobic Bacteria that can’t survive in an oxygen-containing environment or use oxygen for cellular metabolism

Presence of oxygen can lead to the production of reactive oxygen-containing radicals in these species, which leads to cell death.

64
Q

What are facultative anaerobes?

A

Bacteria that can switch between metabolic processes: using oxygen for aerobic respiration if it is present or switching to anaerobic metabolism if oxygen is not available.

65
Q

What are aerotolerant anaerobes?

A

Bacteria that can’t use oxygen for cellular metabolism (b/c they are anaerobes), but can survive in an oxgyen-containing environment.

66
Q

VIP NOTES

A

One of the main differences between prokaryotes and eukaryotes is that prokaryotes lack a nucleus and membrane-bound organelles.

Prokaryotes are also single-celled organisms, meaning that each cell must be able to perform all of the functions necessary for life on its own using that single cell.

However, prokaryotes may live in colonies with each other and may signal each other to share information about the environment

Because prokaryotes do not form multicellular organisms (like eurkatyotes), each bacterium is responsible for protecting itself from the surrounding environment.

67
Q

What is the envelop of the prokaryotic cells?

A

The envelop consists of the cell wall + the cell membrane:
- -The cell wall forms the outer barrier of the cell
- - The cell membrane forms the next layer, which is composed of single phospholipid bilayer like the eukaryotes.

68
Q

What is the function of the cell wall?

A

Provides structure + maintain a concentration gradient relative to the enviroment by controlling the movement of solutes into and out of the bacterium

69
Q

What are the two types of cell wall available in prokaryotic cells?

A

Gram positive
Gram negative

70
Q

Describe how the type of cell wall is determined? Describe the process?

A

It is determined by using the Gram Staining process: a crystal violet stain, followed by a counterstain with a substance called safranin.

71
Q

How will it appear if it is positive and if it is negative?

A

If the envelop absorbs crystal violet stain and appears to be deep purple = gram positive.

If the envelop not absorb crystal violet stain, but the absorbs the safranin counterstain and appears to be pink-red = gram negative.

72
Q

Describe the structure of the gram-positive cell wall?

A

Gram positive cell wall consist of thick layer of peptidoglycan (polymeric substance of amino acid + sugars) + lipoteichoic acid (it is not clear what role this acid serves for the bacterium, but the human immune system may be activated by exposure to these chemicals).

73
Q

Describe the structure of the gram negative cell wall?

A

Gram negative cell wall is very thin and also contain peptidoglycan, but in much smaller amounts. The peptidoglycan cell wall is also adjacent to the cell membrane, and are separated from the membrane by the periplasmic space.

74
Q

In addition to the cell wall and cell membrane, what does the gram-negative bacteria also have?

A

Gram-negative bacteria also have outer-membranes containing phospholipids and lipopolysaccharides.

  Interestingly, lipopolysaccharides are part of gram-negative bacteria that triggers an immune response in human beings; the inflammatory response to lipopolysaccharides is much stronger than the response to lipoteichoic acid.
75
Q

What does bacteria use the flagella for?

A

It can be used for propulsion, as it can help them move forward toward food or away from toxins or immune cells.

Bacteria may have one, two, or many flagella.

76
Q

What is the meaning of chemotaxis?

A

The ability of the cell (bacteria) to detect a chemical stimuli and move toward or away from it.

77
Q

What are the three components of flagella?

A

Filament
Basal body
Hook

78
Q

Describe the structure of the filament?

A

A hollow helical structure composed of flagellin.

79
Q

Describe the structure of the basal body?

A

A structure that anchors the flagellum (flagella) to the cytoplasmic membrane (cell membrane or plasma membrane) and also serve as the motor of the flagellum (flagella) that rotates at 300 Hz.

80
Q

Describe the structure of the hook?

A

It is a structure that connects the basal body to the filament, so that as the basal body rotates, it exerts a torque force on the filament causing it to spins and propel the bacterial cell forward.

81
Q

VIP NOTE

A

The overall structure of flagella is similar in both gram-positive and gram-negative bacteria, but the only differences are in the physical structure and the chemical composition of the envelop in gram-positive and gram-negative.

82
Q

VIP NOTE:

A

Prokaryotes concentrate their DNA in a region of the cell known as the nucleoid region, which does not contain a nuclear envelop.

83
Q

Describe the DNA of prokaryotic cells?

A

Prokaryotic DNA is carried on a single circular chromosome:
–which can be found coiled around histone-like proteins in some bacteria
– Archaea have true histones.

84
Q

What are plasmids in prokaryotes?

A

DNA acquired from external sources may also be carried on smaller circular structures known as plasmids.

Plasmids carry DNA that is not necessary for survival of the prokaryotic cell and therefore not considered part of the genome of the bacterium.