Cellular Energetics Flashcards

Git gud

1
Q

What are ’light’ reactions?

A

-They are light dependent
-Membrane-bound
-Release O2 from splitting 2H2O molecules, with
H+ from H2O used in the Chemiosmotic synthesis of ATP, and
Hydride ion (H:-) from H2O reduces NADP+ to NADP

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2
Q

What are ‘dark’ reactions?

A

-Does not require light
-Occur in solution (stroma)
-Reduce gaseous CO2 to carbohydrate
-Require energy of NADPH and ATP

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3
Q

What are Granum?

A

internal plates stacked of Thylakoids in the chloroplasts, connected by the stroma lamella. Where light reactions take place.

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4
Q

What light capturing pigments are present in plants? And how do they deal with the difference in light and chemical reaction times?

A

Primarily Chlorophylls such as Chl a and Chl b.
Antenna pigments such as carotenoids, phycocyanin and phycoerythrin are used to extend the range of light capture, especially green.. they exchange light energy with chlorophylls until captured. They pass on electrons.

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5
Q

Where do the light reactions take place?

A

Takes place in 2 systems: Photosystems; PSI and PSII (which have reaction centres) which operate in series, connected by cytochrome bf complex. Contain many proteins and pigments embedded in the thylakoid membrane.

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6
Q

What is the ‘Z’ scheme? And how does it work?

A

-path of electron flow and reduction potentials of the components in
photosynthesis
-Absorption of light energy converts P680 at PSII reaction centre and P700 at PSII reaction centre (poor reducing agents) to
excited molecules (good reducing agents)
-Light energy drives the electron flow uphill
-NADP+ is ultimately reduced to NADPH
-For 2 H2O oxidized to O2, 2 NADP+ are reduced to 2 NADPH

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7
Q

What are ATP and NADPH used for in photosynthesis?

A

To convert CO2 to hexose phosphates

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8
Q

What are phototrophs?

A

Photosynthetic organisms (some bacteria, algae etc.)

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9
Q

What is the Mitchell’s Chemiosmosis Theory?

A

conversion of energy from electron transport via formation of a transmembrane electrochemical gradient

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10
Q

What is e- (H+) transferring across a ‘coupling’ membrane required for in chemiososmosis?

A

Generating proton motive force

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11
Q

What is photophosphorylation?

A

synthesis of ATP which is dependant upon light energy

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12
Q

What is chloroplast ATP synthase?

A

Made of 2 major particles:
-CFo: Sits in the membrane, forms a pore from H+
-CF1: Sits on top of CFo, protruding into the stroma and catalyses ATP synthesis from ADP and Pi

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13
Q

How were dark reactions identified?

A

Using fast CO2 injection, carbon-14 in hydrogen carbonate ion solution - rapid ‘quench’ killing via alcohol or strong acid to stop reactions and a 2D chromatography improves separation of intermediates

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14
Q

What is RuBisCo?

A

Ribulose-bisphosphate-caboxylase/oxygenase

Is responsible for carbon fixation

also use O2 to catalyse a competing oxygenation reaction, normally carboxylation is 3 times greater than oxygenation

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15
Q

What is the dark reactions cycle in photosynthesis?

A

The Calvin-Benson cycle

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16
Q

What are the 3 steps in the Calvin-Benson cycle?

A

Carboxylation, Reduction and Regeneration

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17
Q

What are the required components for the Calvin-Benson cycle?

A

CO2, RuBisCO, ATP, NADPH

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18
Q

CO2 and the 5-carbon sugar ribulose 1,5-bisphosphate form two molecules of…

A

3-phosphoglycerate (PGA)

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19
Q

Are the dark reactions reversible?

A

metabolically irreversible

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20
Q

What is the structure of RuBisCO?

A

-8 large subunits + 8 small subunits
-Large subunits nuclear-encoded; small subunits chloroplast-encoded
-makes up about 50% of the soluble protein in plant leaves

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21
Q

What is photorespiration?

A

recycles the (toxic) products of the oxygenation reaction; it
consumes NADH, ATP to give glyoxylate, serine, glycine and CO2

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22
Q

Many organisms have evolved to get around RuBisCO limitations..

23
Q

What are carboxysomes?

A

-Produced by cyanobacteria to concentrate CO2 around RuBisCO.
-Semi-crystalline protein structures incorporating RuBisCO
-Cyanobacteria express transport proteins to accumulate CO2 and HCO3

24
Q

What are pyrenoids?

A

-membrane-bound structures
found in the chloroplasts of some algae
-include RuBisCO and concentrate CO2

25
How does C4 (Hatch-Slack pathway) photosynthesis work?
fixes HCO3 - with pyruvate into malate, then transport malate to a second cell type for decarboxylation and refixation by RuBisCO -> more efficient because it fixes HCO3- first (avoids O2) ->depends on spatial separation of the C4 and C3 (RuBisCO) fixation reactions ->The only major C4 crop is maize
26
What is CAM photosynthesis?
-Crassulacean Acid Metabolism -depends on temporal separation of the C4 and C3 (RuBisCO) fixation reactions -CAM plants store C4 acids (malate) in the vacuole for decarboxylation and refixation by RuBisCO in the day -CAM uses an ‘inverted’ cycle of stomatal opening/closing to save water and concentrate CO2 in the leaf
27
What is the main limiting factor of C3 cycle?
CO2/02
28
What is an exergonic reaction?
Where energy is released
29
What is an endergonic reaction?
Where energy is required
30
If the absolute amount of delta G is smaller for B than for a then..
the energy released during A can be used for B (if more energy is released)
31
Enzymes are often __-dependent
pH
32
How is ATP formed?
Through either: -Substrate-level phosphorylation (transfer of phosphate group) -Oxidative phosphorylation (chemiosmosis), e.g. ATP synthase in inner mitochondrial membrane
33
What are enzymes regulated by?
gene expression and protein modification (such as phosphorylation)
34
In ATP the ____ Pi stores the energy
outermost
35
Why is O2 the final acceptor in the electron transport chain?
it draws on electrons.. often from what has become H+
36
Electron transport chain pumps H+ ___ gradient whereas ATP synthase lets it ______ concentration gradient.
against, go down
37
H- accepted by ____. H+ used by ________. Carried by NADH.
O2, ATP synthase.
38
What is the energy investment stage?
The first part of Glycolysis where 2ATP is required
39
What is the energy pay-off stage?
Second step of Glycolysis where 4ATP is produced.
40
What is the sum total of Glycolysis?
2 Pyruvate + 2H2O + 2ATP + 2NADH + 2H+
41
What is the link reaction?
Where pyruvate is changed with the addition of Coenzyme A to produce Acetyl CoA. Does not go ahead unless O2 is present. Required to pull electrons into the mitochondria. It is a part of the Krebbs Cycle.
42
One cycle of the Citric Acid Cycle produces ..
3 NADH, 2FADH, 1 ATP (excluding the link reaction)
43
What are the overall products of the citric acid cycle?
8 NADH + 2FADH2 + 2 ATP
44
What are the overall products of cellular respiration?
Approx. 30 or 32 ATP, 6CO2 and 6h2O. Delta G = -686 kcal/mol
45
Fermentation produces _ ATP per glucose and ___
2, 2 ethanol or 2 lactate
46
Prokaryotes often don't proceed passed glycolysis. Why?
They don't have mitochondria
47
The electron transport chain establishes a ____ gradient
proton
48
Chlorophylls contain what kind of ring with what in the centre?
Tetrapyrrole ring (Chlorin) and contains Mg2+
49
What does the rotor do in ATP-synthase in photosynthesis?
rotates leading to conformational changes in beta and alpha sub units
50
For 4e- transferred to 2NADPH, 2 ATP are produced from the proton gradient. However _ NADPH and _ ATP are required for carbohydrate synthesis.
2, 3
51
What is the cyclic electron transport?
Feedback by ferredoxin, donating electrons back to the PQ pool in the Cyt bf in PS I (P700) to increase protonmotive force for increased ATP synthesis, THIS DOES NOT PRODUCE ADDITIONAL NADPH but aids the ATP cost that is required for carbohydrate synthesis.
52
What is C3 photosynthesis?
where the first carbon compound produced contains three carbon atoms.
53
What are the 3 points of the calvin-benson cycle?
RuBP -> 3PGA -> G3P