Cell Structure Flashcards

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0
Q

By looking inside a cell how could you tell if it was a prokaryote or a eukaryote?

A

Presence/absence of nucleus.

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1
Q

What important functions do the following play in cell: cytoplasmic membrane, ribosomes, cell wall?

A

Permeable barrier, translation of mRNA into protein and structural strength.

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2
Q

How are viruses like cells and in which major ways to they differ?

A

They both have genome but virus are not an open system, do not have metabolic capabilities, lack of chromosomes and cannot replicate unless it’s infecting a cell.

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3
Q

Differentiate between the nucleus and the nucleoid.

A

Nucleoid is only a mass within the prokaryotic cell due to chromosome aggregation. Nucleus is an specialized membrane that encloses eukaryotic genome.

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4
Q

What does it mean to say that a bacterial cell is haploid?

A

It has only one single copy of its genome.

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5
Q

How are the membrane lipids of Bacteria and Archaea similar and how do they differ?

A

They both have the same inner and outer construction but in Archaea the fatty acids are linked through ether bonds instead of ester bonds. Instead of real fatty acids they have a repetition of isoprene units and their membrane actually forms a monolayer.

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6
Q

List two reasons why cell cannot depend on diffusion as a means of acquiring nutrients.

A

It’s slow and by diffusion cell would never accumulate nutrients.

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7
Q

Why is physical damage to the cytoplasmic membrane such a critical issue for the cell?

A

Because cell membrane controls the uptake of solutes and water.

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8
Q

Contrast simple transported, phosphotransferase system and ABC transporters in terms of energy source, chemical alterations of the solute transported and number of proteins involved.

A

Simple transporters use proton motive force as energy source, do not alter the compound and involve one protein.
Phosphotransferase transporters use energy from PEP, phosphorylate their compounds and involve a group of enzymes.
ABC transporters hydrolysis ATP to get energy, do not alter the compound and it is bond to a periplasmic binding protein, which interacts with membrane transporter.

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9
Q

Which transport system is best suited for the transport of nutrients present at extremely low levels and why?

A

ABC system because periplasmic binding proteins have high affinity to their substrates.

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10
Q

Why is protein excretion important to cells?

A

Because they are involved in nutrient degradation, transport and uptake of substrates and pathogeny (toxins).

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11
Q

Why do bacterial cells need walls? Do all bacteria have cell walls?

A

Not all of them have cell walls. But it is a important for rigidity and also prevents osmotic lysis.

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12
Q

Why is peptidoglycan such a strong molecules?

A

Because it has many cross-links.

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13
Q

What does the enzyme lysozyme do?

A

It cleaves the beta-1,4-glycosidic bonds between N-acetyl-glucosamine and N-acetylmuranic acid.

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14
Q

What components constitute the outer membrane of gram-negative bacteria?

A

LPS, fatty acids and proteins.

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15
Q

What is the function of porins and where are they located in a gram-negative cell wall?

A

They are located at the outer membrane. They permit uptake of solutes by specific-binding or not.

16
Q

What component of the cell has endotoxin properties?

A

Lipid A.

17
Q

Why does alcohol readily decolorize gram-negative but not gram-positive bacteria?

A

Because it cannot penetrate gram-positive bacteria’s cell wall since the porous are closed due to dehydration.

18
Q

How does pseudomurein resemble peptidoglycan? How do the two molecules differ?

A

They both have N-acetylglucosamine but instead of N-acetylmuranic acid it has N-acetyltalosaminuronic acid. The bonds are actually beta-1,3 instead of beta-1,4.

19
Q

What is the composition of an S-layer?

A

Interlocking protein or glycoprotein.

20
Q

Why are Archaea insensitive to penicillin?

A

Because they do not have peptidoglycan.

21
Q

How do fimbria differ from pilli, both structurally and functionally?

A

Pilli are longer and involved in genetic exchange, twitching motility and adhesion. Fimbria promove adhesion.

22
Q

Why would it be impossiblr for gram-negative bacteria to store sulfur as gram-negative sulfur-oxidizing chemolithotrophs can?

A

Because sulfur is storage in the periplasm.

23
Q

What form of iron is present on magnetosomes?

A

Ferric iron.

24
Q

What gas is present in a gas vesicle? Why might a cell benefit from controlling its buoyancy?

A

The gas from its environment. By controlling its buoyancy, bacteria can be closer to favourable conditions such as light exposure for cyanobacteria.

25
Q

What is dipicolinic acid and where is it found?

A

It’s a molecule that binds to water. It is found in the core of endospores.

26
Q

What are SASPs and what is their function?

A

They are small acid-soluble proteins that bind to DNA protecting it from damage and are also carbon and energy source during outgrowth.

27
Q

What happens when an endospore germinates?

A

It goes back to cell vegetative stage.

28
Q

Compare the flagella of Bacteria and Archaea in terms of their structure and function.

A

Flagella in Archaea tend to be thinner which makes it slower. The motor is also driven by ATP instead of proton motive force.

29
Q

How does gliding motility differ from swimming motility in both mechanism and requirements?

A

Swimming motility requires a flagella driven by proton motive force in a liquid medium. Gliding motility lacks flagella and requires a solid surface.

30
Q

Contrast the mechanism of gliding motility in a filamentous cyanobacterium and in Flavobacterium?

A

Cyanobacteria secretes a polysaccharide slime that attaches to the solid surface pulling the cell along. Flavobacteria have specific motility proteins anchored in their cell wall and cell membrane that moves by proton motive force.

31
Q

Define the word chemotaxis. How does chemotaxis differ from aerotaxis?

A

Chemotaxis is a oriented movement towards a chemical compound. Aerotaxis is a movement towards oxygen specifically.

32
Q

What causes a run versus a tumble?

A

Run happens when peritrichous flagellated bacteria move counterclockwise and tumbles occurs when they move clockwise.

33
Q

How can chemotaxis be measured quantitatively?

A

By a capillary tube assay. The capillary tube is filled with a repellent or an attractant and put in a medium. The number of bacteria in the capillary tube is counted.

34
Q

How does scotophobotaxis differ from phototaxis.

A

Scotophobotaxis orients movement away from darkness and phototaxis orients the cell towards a source of light.