Cell Bio Ch 8 Flashcards

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0
Q

FACS is?

A

Florescence activated cell sorter
Uses an antibody coupled to fluorescent dye, the antibody binds to only 1 cell type.
Single fluorescent cell gets a negative charge, and the non fluorescent get a positive charge. Accurate to 1 in a thousand cells.

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1
Q

Cells isolated from intact tissue

A

Extracellular membrane is disrupted by proteolytic enzymes.

EDTA chelates calcium on which the cell-cell adhesions depend.

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2
Q

Microdissection technique

A

Selected cells are dissected from thin tissue slices that are prepared for microscopic examination
Cut with laser

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3
Q

Disadvantages of using intact tissue for experiments

A

Not a convenient source of material.

Difficult to purify particular molecules from an intact tissue (too complex).

No way possible to do genetic manipulations on the livestock.

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4
Q

Cultured cells ____________

A

Continue to differentiate similar to their origin cells

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5
Q

Advantages of using cells from cultures for experiments

A

It provides a more homogeneous population of cells to extract material.

Convenient to work with in the lab.

Under proper conditions, most plants and animal cells can live, multiply and even differentiate in a tissue-culture dish.

In the lab they can be monitored continuously and effect of different media or hormones can be studied.

In addition, interactions between two cell types can also be studied.

Experiments done on cultured cells are called “in vitro” (“in glass”) in contrast to those done using intact organism “in vivo” (“ in the living organism”).
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6
Q

Primary culture

A

Culture prepared directly from tissue of the organism.

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7
Q

Secondary culture

A

Primary culture has been repeatedly cultured

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8
Q

____________ cells are widely used as a source of homogenous cells.

A

Eukaryotic

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9
Q

Problem with cell cultures

A

Cells die after finite number of cell divisions

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10
Q

replicative cell senescence

A

Cell death after a finite number of cell divisions.

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11
Q

2 main reason for cell death

A

Telomere shortening - cells have turned off production of Telomerase enzyme. As a result telomere shortening occurs with each cell division.
Activation of cell –cycle checkpoint mechanism that arrests cell cycle and is called “culture shock”.

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12
Q

How to overcome cell death

A

Provide telomerase to the cells.
Add oncogene to inactivate the checkpoint.

Most human cells used in labs are cancer cells

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13
Q

Transformed cell lines

A

Human cells used in lab, derived from cancer cells

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14
Q

Rodent cell lines

A

Do not turn off telomerase production. Can grow indefinitely if culture shock is avoided.

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15
Q

Embryonic stem cells are harvested from

A

Inner mass of early embryo

16
Q

Advantages of embryonic stem cells

A

Can provide specialized cell therapy:
replace degenerate muscles in muscular dystrophy.
replace insulin secreting cells (Diabetes type I).
replace dead nerves in Parkinson’s disease.
rejuvenate cardiac muscles in weak heart cells.

17
Q

Disadvantages of embryonic stem cells

A

If the transplanted cells are genetically different from the patient’s cells it could be rejected by the patient’s immune system. This could be avoided by using cells derived from the patient.
If the ES cells are themselves transplanted into a person they can give rise to tumors called teratomas.
a

18
Q

Cells from adult tissue can be used for

A

Reproductive cloning-creating another organism or tissue through cloning
Or therapeutic cloning- creating generalized personalized embryonic stem cells

19
Q

Therapeutic cloning

A

Identical to donor cells
Can be used for tissue repair
Can be used to study inherited disease

20
Q

Column chromatography

A

Used to separate proteins
Mixture of protein passed through a solid porous matrix
Different proteins are retarded at different rates by their interaction with the matrix
High degree of purity can be obtained

21
Q

Different matrices of chromatography

A

Ion exchange chromatography- proteins separated on basis of surface charge using positive or negative charged beads
Hydrophobic chromatography- binds proteins with exposed hydrophobic regions
Gel-filtration chromatography- separates proteins by their size
Affinity chromatography- proteins separated by their binding properties

22
Q

Epitope tagging

A

To see the localization or purification of proteins
Small tag (epitope) targets protein using an antibody
Attaches to N-terminus or C-terminus

23
Q

Commonly used epitope tags for purification

A

Flag, GST, 6xHis, c-myc

24
Q

SDS Polyacrylamide-Gel Electrophoresis (SDS-PAGE)

A

Highly cross linked gel
Pore size of gel can be adjusted to retard protein of interest
Proteins are in a negatively charged substance sodium dodecyl sulfate, SDS
SDS Binds to hydrophobic regions, unfolding proteins a,d separating proteins from other proteins and lipids
Separated by molecular weight. SDS allows proteins to be pulled toward anode
Dye Coomassie blue, silver stain, to allow detection

25
Q

Yeast two-hybrid system

A

DNA gene activator protein and bind domain need to be close in proximity to activate transcription
Bait and prey proteins attached, once attracted to each other, transcription is initiated.

26
Q

Genetic engineering

A

The ability to manipulate DNA with precision in a test tube or an organism.

27
Q

Recombinant DNA technology

A

A mixture of techniques that are used to manipulate DNA

28
Q

Restriction enzymes

A

Take large DNA molecules and cut them in fragments.
Bacteria use them to cut up foreign DNA that meters the cell
Deoxyribo endonucleases
Cut palindromic sequences

29
Q

Restriction enzyme uses

A

No ATP required
Can make sticky or blunt ends
Can recognize 4, 6, or more bases for cleavage
6 base is called a “six-base cutter”

30
Q

Gel electrophoresis with DNA

A

DNA is negatively charged and doesn’t need SDS, like proteins do.
Ethidium bromide used for dye
Porous agarose used for gel

31
Q

PCR

A

Genes can be selectively amplified, usually 20-30 cycles
1 cycle, 3 steps:
Denaturation- at 95C to separate DNA strands
Annealing- at 55C to allow primers to hybridize
Elongation- at 68C so polymerase can elongate the chain