Biopharmaceuticals Flashcards

1
Q

What are pharmaceuticals?

A

Drugs used to diagnose, prevent, treat or cure disease

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2
Q

What is a biotechnology medicine/product?

A

Pharmaceutical product used for therapeutic or in vivo diagnostics, produced in full or in part by modern biotechnological means (include antibiotics extracted from fungi; insulin from pig pancreas or recombinant insulin)

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3
Q

Give examples of products which are from a animal origin

A

Antibodies, enzymes, hormones, blood factors, growth factors, cytokines

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4
Q

Give examples of products which are form a plant origin

A

aspirin, alkaloids, digitalis, quinine

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5
Q

Give example of products form a microbial origin

A

vaccines, antibiotics, toxins/toxoids

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6
Q

What are biopharmaceutical proteins or nucleic acids?

A

based pharmaceuticals that are used for therapeutic or in vivo diagnostics, produced by means other than direct extraction from native biological source

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7
Q

Give examples of pharmaceuticals from chemical synthesis?

A

Paracetamol (acetaminophen), ketamine, acyclovir

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8
Q

Give examples of pharmaceuticals from biological extraction

A

Factor VIII, insulin, alkaloids (morphine), antibiotics, vaccines, antibodies (passive immunity), thrombolytic agents

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9
Q

Give examples of some biopharmaceuticals

A

Factor VIII, insulin, vaccines, antibodies (e.g. monoclonal), thrombolytic agents

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10
Q

What are the advantages of biopharmaceuticals?

A

Overcomes issue of source availability (e.g. Cytokines)

Improves product safety (e.g. Blood products – HIV, hepatitis, CJD)

Alternative to extraction (e.g. Insulin from slaughterhouses, hormones from urine)

Engineering of more effective therapeutic proteins (e.g. Insulin, Factor VIII)

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11
Q

What region of a chromosome is the encoding region?

A

euchromatic gene

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12
Q

What fraction of the genome is transcribed into RNA?

A

1/3

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13
Q

What % of RNA is believed to produce proteins?

A

~5%

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14
Q

What are bioinformatics used for?

A

to identify functional sequence motifs (e.g. catalytic sites, transmembrane regions) by homology to other known genes (homologues), even in different species (orthologues)

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15
Q

What are knock-out animals?

A

generation of animals in which the study gene is deleted – observation of phenotype can Often reveal role of gene product

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16
Q

What are the different variations in gene expression between cells?

A

different cell types - stage in organisms development - phase of cell cycle - response to internal and external (i.e. environmental) factors

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17
Q

What are gene chips?

A

study of differential RNA expression (transcriptome) in different cells/conditions (e.g. Expression in cancer cell may provide drug target)

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18
Q

What are proteomics?

A

Proteomics: analysis of cellular protein expression (proteome)

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19
Q

What are structural genomics?

A

3D protein analysis (NMR) – structure may predict function

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20
Q

What is pharmacogenomics?

A

correlation of gene sequences to drug response

Determine which drugs (& dose) to give which individuals – benefits v side effects

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21
Q

What do pharmacogenomics look at?

A

mutations and polymorhisms (single nucleotide polymorphisms – SNPs)

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22
Q

what are most BPs produced by?

A

genetic engineering using recombinant expression systems

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23
Q

What are the steps of using recombinant expression systems?

A

First - identification and isolation of therapeutic gene/custom synthesis

Molecular cloning into vectors (e.g. plasmids, viruses)

Propagation (maybe protein expression) in cell lines

Purifying products (DNA, protein, vector)

24
Q

What is used to clone mRNA into cDNA?

A

produced using retrovirus reverse transcriptase

25
What regulates the expression of genes?
Gene promoters
26
What does differential splicing allow?
Different mRNAs and thus proteins to be formed from the same gene sequence
27
What are introns?
Non coding DNA
28
What is the gene often fused to in order to ease purification?
A leader sequence or tag that allows the protein to be isolated using, for example antibodies
29
What are the two types of expression a cell line can have?
Transient/stable expression
30
What cell lines are most BP proteins produced in?
E.coli (e.g. K12) or mammalian cell lines (e.g. Chinese hamster ovary, CHO; baby hamster kidney, BHK)
31
What does poor post-translational modifications affect?
Functions
32
What is removed form microbial cell lines?
Surface LPS pyrogenic
33
What can high-level intracellular expression of heterologous proteins produce?
Inclusion bodies
34
What is a advantage of inclusion bodies?
Can aid centrifugal privation
35
What is a disadvantage of inclusion bodies?
Aggregates of partially folded foreign proteins
36
What is a solution of inclusion bodies?
express soluble intracellular fusion protein/tag (foreign-native protein) Purify and enzyme cleave off target protein
37
What are some examples of fusion proteins?
Fusion proteins include glutathione transferase, thioredoxin, maltose-binding protein
38
What are advantages of culturing yeast cell line?
Cultured relatively fast and cheaply
39
What is the most widely used yeast cell line?
S. cerevisiae most widely used (e.g. insulin, Hepatitis B vaccine antigen, anticoagulants)
40
What are advantages of using S. cerevisiae?
Genetics well characterised Safe – used in brewing, baking
41
What does Mannose glycosylation lead to?
rapid blood clearance
42
What are disadvantages of mammalian cell lines?
Slower and more expensive to set-up, up-scale and maintain (nutrients, fragility)
43
What are most widely used mammalian cell lines?
Chinese Hamster Ovary (CHO), Baby Hamster Kidney (BHK) most widely used (e.g. insulin, vaccines). Hybridoma cells for monoclonal antibodies
44
How are transgenic animals produced?
by microinjecting exogenous DNA construct into egg cells
45
What are some advantages of transgenic animals?
Milk safe, well characterised, abundant Continued inheritance of recombinant DNA in every cell Relatively low costs after initial transgenic outlay
46
What is a disadvantage of transgenic animals?
significant lag period from viable embryo and manufacture (n.b retrovirus vectors)
47
What is the only licensed transgenic animal BP?
human antithrombin ‘Atryn’
48
Give a example of some glycosylation differences using transgenic animals?
c.f. CHO cells – seemed to enhance efficacy but reduce half-life
49
What do Agrobacteria species contain?
Ti plasmids
50
What are advantages of transgenic plants?
Cultivation/harvest/scale up easy and costs low Proteins usually stable Plants free of human pathogens Can get low expression/gene silencing
51
What are disadvantages of transgenic plants?
Glycosylation significantly different – immunogenic Potential plant metabolite contamination (alkaloids) Public issues surrounding GM crops – cell lines?
52
What is CaroRX?
recombinant ‘plantibody’ against Strepococcus mutans in tooth decay - topical BP
53
What is Merispace?
oral (corn) recombinant gastric lipase to treat lipid malabsorption due to poor pancreas secretion (e.g. CF)
54
What can Agrobacteria and plant viruses also be used for?
Transferring BP genes into plants transiently
55
What are advantages of insect cells?
High level expression (strong promoters) – up to 50% of cell protein Rapid and cheaper culture than mammalian cells Most human pathogens don’t infect insect cells
56
What are disadvantages of insect cells?
Most protein is intracellular – purification needed Often incomplete/markedly different glycosylation
57
Cervarix HPV cervical cancer vaccine particles from?
recombinant L1 capsid protein