BIOLOGY FINAL REVIEW Flashcards
Cell theory
All living things are composed of cells
The cell is the basic functional unit of life
Cells arise only from preexisting cells
Peroxisomes
Peroxisomes contain hydrogen peroxide, they break down long chain fatty acids and participate in the synthesis of phospholipids
Microfilaments
Made of actin
Play a role in cytokinesis, form the cleavage furrow during mitosis
Microtubules
Made of hollow polymers of tubulin
Radiate throughout the cell, providing pathways for the motor proteins kinesin and dynein
Make cilia and flagella
Centrioles are found in the centrosome
cilia and flagella
cilia are for movement of materials along cell surface, flagella are for movement of the cell itself
share the same structure (9+2), only in eukaryotes
Centrioles
the organizing centers for microtubules
during mitosis, they migrate to opposite poles and organize the mitotic spindle, microtubules that attach to the chromosomes via kinetochores and pull apart the sister chromatids
Intermediate filaments
Diverse, includes keratin
Cell-cell adhesion or maintenance of overall cytoskeleton integrity, help anchor other organelles
varying protein identity
Epithelial tissue
protects against pathogen invasion
involved in absorption, secretion, sensation
tightly joined to each other and to the underlying basement membrane
constitute the parenchyma, functional parts of the organ
often polarized (facing lumen or interacts with underlying blood vessels, structural cells
Epithelial tissue classifications
Classified by layers and shape
simple has on layer of cells, stratified have multiple, pseudostratified only appears to have multiple
cuboidal are cube-shaped, columnar are long and thin, squamous are flat
Connective tissue
supports the body and provides a framework for the epithelial cells to carry out their function
constitute the stroma, support structure
bone, cartilage, tendons, ligaments, adipose tissue, blood
most produce and secrete materials to form the extracellular matrix (collagen, elastin)
Archaea
historically considered extremophiles, have ability to use alternative sources of energy
hypothesized to share an origin with eukaryotes, associate their DNA with histones like us
divide by binary fission
Bacteria
can be obligately aerobic, aerotolerant, etc
have a cell wall and phospholipid cell membrane that together are known as the envelope
Bacteria classifications
spherical = cocci rod-shaped = bacilli spiral-shaped = spirilli
Bacteria Gram negative vs positive
gram positive absorbs the violet stain, have a thick layer of peptidoglycan, contains lipoteichoic acid
gram negative absorbs the pink-red safranin counterstain, have a thin layer of peptidoglycan, have an additional outer membrane containing lipopolysaccharides (that triggers immune response)
Bacteria flagella structure
Flagella are composed of a filament, basal body, and hook
filament is hollow, helical structure composed of flagellin
basal body anchors the flagellum to the cytoplasmic membrane and serves as the motor
hook connects the filament and the basal body
Prokaryotes in general (DNA, cell membrane, ribosome)
have a single circular molecule of DNA concentrated in the nucleoid region
DNA acquired from external sources may be carrier on circular plasmids
plasmids carrier DNA not necessary for survival
Cell membrane is used for ETC and generation of ATP
contain a 30S + 50S = 70S ribosome
Binary fission
Binary fission takes less energy and proceeds more rapidly
circular chromosome attaches to cell wall and replicates while the cell continues to grow in size, eventually two exist and the cell divides along the midline
Plasmid use prokaryotes
Plasmids may carry virulence factors from external sources that increase pathogenicity
a subset of plasmids called episomes can integrate into the genome of the bacterium
Transformation, conjugation, and transduction
transformation is the integration of foreign genetic material taken from the vicinity (usually from lysed bacteria)
conjugation is sexual reproduction using a conjugation bridge made from sex pili to transfer genetic information between a donor male (+) and a female (-)
conjugation allows for rapid acquisition of antibiotic resistance or virulence factors
transduction is transfer of genetic material using a vector, usually a virus
Transposons
Transposons are genetic elements capable of inserting and removing themselves from the genome
Prokaryotic life cycle
Lag phase- adapting
exponential (log) phase- adapted
stationary phase- reduction of resources
death- out of resources
Viruses
genetic information may be circular or linear, composed of either DNA or RNA, have a protein coat known as a capsid
lack ribosomes and must use host cell
enveloped viruses are easier to kill
bacteriophages
bacteriophages are viruses that target bacteria, simply inject their genetic material inside
have a tail sheath (syringe) and tail fibers (for recognition)
positive sense vs negative sense RNA
single-stranded RNA from viruses can be positive sense (directly translate genome) or negative sense(serves as template for complementary strand which then serves as template for synthesis)
negative sense must carry an RNA replicase
retrovirus type of virus
retrovirus are enveloped, single stranded
carry reverse transcriptase
can only be removed by killing the cell
virus infection mechanism and limitations
viruses can only infect certain cells, must bind to specific receptors
enveloped viruses fuse with plasma membrane (HIV)
sometimes mistaken as useful molecule and brought into cytoplasm
viral genome must be returned to its original form before packaging
how viral progeny leave cell
progeny can either be released through the initiation of cell death or simple lysing of cell after being filled with virions, or leave by fusing with the plasma membrane (extrusion)
lytic cycle or lysogenic cycle
lytic cycle has little regard for survival of host cell (virulent)
lysogenic cycle integrates into host genome and is replicated as the bacterium reproduces
can be converted to lytic cycle by environment
prions
infections proteins, trigger misfolding of other proteins
viroids
very short circular ssRNA, typically infects plants and silence genes
Cell cycle stages
Four stages: G1, S, G2, M
first three are interphase, where cell spends most of its time
G0 phase implies no preparation for division
G1 stage
G1- Presynthetic gap
creates organelles and protein, increase size
passage into S stage is governed by restriction point, must contain proper complement of DNA
p53 controls this
S stage
S- Synthesis of DNA
replicates its genetic material, will have two identical chromatids although chromosome number has not changed
G2 stage
G2- Postsynthetic gap
checks that there is enough cytoplasm and organelles (adequate size), DNA replication proceeded correctly
p53 controls this
M stage
M- Mitosis
Prophase, metaphase, anaphase, and telophase
Cyclins and cylin-dependent kinases
Cyclins and cyclin-dependent kinases are responsible for cell cycle. Can create complex which phosphorylates transcription factors that promote transcription of genes required for next stage
Mitosis-Prophase
condensation of the chromatin into chromosomes
centriole pairs separate and move towards opposite poles, located at centrosome
centrosome-
responsible for correct division of DNA
MTOC at centrosomes form spindle fibers, asters
Mitosis-Metaphase
centriole pairs are now at opposite ends
chromosomes align at metaphase plate
Mitosis-Anaphase
centromeres split so that each chromatid has its own distinct centromere
sister chromatids separate and are pulled toward opposite poles
Mitosis-Telophase
reverse of prophase
spindle apparatus disappears
nuclear membrane reforms
nucleoli reappear, chromosomes uncoil
Mitosis-Cytokinesis
separation of cytoplasm and organelles
Meiosis 1 general concept and term
homologous chromosomes separated, generating haploid cells, known as reductional division
Meiosis 1 difference from mitosis - prophase
homologous chromosomes come together and intertwine in a process called synapsis
each synaptic pair is referred to as a tetrad
crossing over occurs if chromosomes break at point of contact (chiasma)
Meiosis 1 difference from mitosis - metaphase
tetrads align at plate, homologous chromosomes are held up with one spindle fiber (in meiosis there are two for each pair of sister chromatids)
Meiosis 1 difference from mitosis - anaphase
homologous pairs separate and are pulled to opposite poles
first law of segregation, either chromosome can end up in either daughter cell
Meiosis 1 difference from mitosis - telophase
each chromosome still consists of two sister chromatids, the cells are now haploid
Meiosis 2 general concept and term
similar to mitosis, separation of sister chromatids, equational division
X chromosome
X chromosome contains more genetic information
males only have one allowing for sex-linked disorders
Y chromosome
contains very little information
contains SRY (sex-determing region Y) which codes for the initiation of testis development. In absence all zygotes will be female
testicles
seminiferous tubulus and interstitial cells of Leydig
seminiferous tubules
sperm are produced, nourished by sertoli cells
interstitial cells of Leydig
testosterone is secreted
epididymis
sperm develop, flagella gain motility
seminal vesicles, prostate gland, and bulbourethral gland
create seminal fluid
seminal vesicles contribute fructose
prostate gland gives mild alkaline properties to protect against female reproductive acidity
bulbourethral (prostate) gland produces a cleaning and lubricating fluid
spermatogenesis order
Diploid Spermatogonia -> Diploid Primary spermatocytes -(meiotic division)-> Haploid secondary spermatocytes -> haploid spermatids -> mature spermatozoa
sperm anatomy
head (genetic material),
midpiece (mitochondria)
acrosome cap (penetrating ovum, made from Golgi Apparatus)
ovaries
produce estrogen and progesterone
located in pelvic cavity, consists of thousands of follicles
follicles
follicles are multilayered sacs that contain and nourish the eggs
oogenesis order and timing
By birth, all oogonia are considered primary oocytes, arrested in prophase 1.
One primary oocyte per month will complete meiosis I, producing a secondary oocyte and a polar body.
The secondary oocyte remains in metaphase II unless fertilization occurs.
zona pellucida
Oocytes are surrounded by zona pellucida
protects the oocyte and contains compounds for sperm cell binding
corona radiata
corona radiata surrounds the zona pellucida
Meiosis II is triggered when both layers are penetrated
hypothalamus start of puberty
At the start of puberty, hypothalamus releases GnRH which triggers the anterior pituitary gland to synthesize and release FSH and LH
FSH and LH general males
FSH stimulates Sertoli cells, sperm maturation
LH causes the interstitial cells of Leydig to produce testosterone
testosterone exerts negative feedback on hypothalamus, anterior pituitary
FSH and LH general females
Estrogens are secreted in response to FSH
Progesterone is secreted by the corpus luteum in response to LH
Menstrual cycle general definition and stages
The process of the endometrial lining growing and shedding in response to estrogen and progesterone levels
Follicular phase, ovulation, luteal phase, menstruation/pregnancy
Follicular phase
begins when the menstrual flow begins from previous cycle
GnRH increases due to decreased estrogen and progesterone, causes increased FSH and LH
these two hormones develop follicles, which begin to produce estrogen
in response to estrogen, gnRH, LH, and FSH concentrations level off.
in response to estrogen, regrowth of the endometrial lining occurs
Ovulation
in response to estrogen reaching a threshold, gnRh, LH, and FSH levels spike
the LH surge induces ovulation, the release of the ovum from the ovary into peritoneal cavity
Luteal Phase
after ovulation, the ruptured follicle forms the corpus luteum
the corpus luteum secretes progesterone
high levels of progesterone cause negative feedback on GnRH, FSH, and LH
Menstruation
if implantation does not occur, the corpus luteum loses its stimulation from LH, progesterone levels decline, and the uterine lining is sloughed off
Pregnancy (menstrual cycle)
if fertilization has occurred, the zygote develops into a blastocyst that implants in the uterine lining and secretes hCG (an analog of LH)
hCG maintains the corpus luteum, which secretes estrogen and progesterone during first trimester, keeping uterine lining in place
in second trimester hCG levels decline, the placenta can secrete enough progesterone and estrogen by itself
Menopause
ovaries become less sensitive to FSH and LH, resulting in ovarian atrophy. Menstruation stops. Blood levels of FSH and LH increase as negative feedback is removed
Fertilization steps
a secondary oocyte is ovulated on day 14, where it travels into the fallopian tube and can be fertilized up to 24 hrs after ovulation
first sperm to come into direct contact with the secondary oocyte creates the acrosomal apparatus
after penetration of sperm through cell membrane, the cortical reaction (release of calcium ions) occurs
as the zygote moves to the uterus for implantation, it undergoes rapid mitotic cell divisions. The first cleavage officially creates an embryo
Corticol reaction (fertilization)
release of calcium ions that depolarizes the cell membrane of the oocyte which prevents multiple fertilization and increases the metabolic rate of the zygote
Membrane is now called the fertilization membrane
Indeterminate cleavage vs determinate cleavage
Indeterminate cleavage results in cells that can still develop into complete organisms
determinate cleavage results in cells that are committed to differentiating
Blastulation of embryo
several divisions after the embryos first division, it becomes a solid mass of cells known as a morula
the morula forms the blastula
the blastula burrows into the endometrium
Blastulation- blastocoel
the blastula’s inner cavity is called a blastocoel
contains the trophoblast (surrounds the blastocoel and gives rise to chorion which becomes placenta, serves as an interface between the maternal blood supply and the embryo)
also contains the inner cell mass (protrudes into the blastocoel and gives rise to the organism itself)
Blastulation- development and connection of the placenta
trophoblasts form chorionic villi, which develop into placenta
the embryo is connected to the placenta by the umbilical cord
two arteries, one vein. vein is oxygenated
Blastulation- support of embryo
until the placenta is functional, the embryo is supported by yolk sac
The allantois is involved in early fluid exchange between the embryo and the yolk sac. Surrounded by the amnion membrane, which serves as a shock absorber. Chorion also forms an outer membrane around the amnion
Gastrulation definition
Once the cell is implanted it can begin the generation of three distinct cell layers
archenteron
the membrane invaginates into the blastocoel, forming the archenteron, which later becomes the gut. The opening, called the blastopore, becomes the anus in deuterostomes
Ectoderm
Ectoderm- “attracto derm”
epidermis, hair, nails, epithelia of nose, mouth, eye, nervous system
Mesoderm
Mesoderm- “means oderm”
musculoskeletal and circulatory system, excretory system, gonads, muscular and connective tissue layers, kidneys
Endoderm
Endoderm- “internal derm”
digestive and respiratory tracts, pancreas, thyroid, bladder, liver
Differentiation control
selective transcription controls differentiation
is mediated by chemical substances called inducers
responder cells must be competent to be induced
Neurulation
Once the three germ layers are formed, the notochord forms from the mesoderm
Formation of notochord
notochord induces ectoderm cells to slide inward, forming neural folds, which surround a neural groove and eventually fuse into a neural tube
neural crest cells at the tip of each fold form the peripheral nervous system
Teratogens
Teratogens are substances that interfere with development
Folic acid deficiency results in spina bifida
determination
specification
differentiation
order and description
Specification (cell is designated as a certain type) -> Determination (cell differentiation is designated) -> Differentiation
Potency and types of potent cells
Potency describes ability to differentiation
Totipotent can differentiate into any type
Pluripotent can differentiate into all but placenta
Multipotent can differentiate into all from a particular group
Autocrine signals
Paracrine signals
Juxtacrine signals
Endocrine signals
definitions
Autocrine signals - same cell
Paracrine signals - local area
Juxtacrine signals - no diffusion, directly stimulating adjacent cell
Endocrine signals - travel through blood
growth factors definition
peptides that promote differentiation
types of inducers
Reciprocal development definition
development of one induces development of the other
How does apoptosis occur?
the cell undergoes changes in morphology and divides into apoptotic blebs
apoptotic blebs become apoptotic bodies, which are digested by other cells
placental barrier and placenta in fetal circulation
Placental barrier serves for immunity, placenta serves nutrient, gas, and waste exchange functions
oxygenation in fetal circulation
Oxygenation occurs at placenta
Umbilical arteries carry blood away from fetus like all arteries
deoxygenated
Umbilical veins carry blood towards the fetus
oxygenated, from placenta
foramen ovale
connects the right atrium to the left atrium, bypassing right ventricle
ductus arteriosus
shunts leftover blood from the pulmonary artery to the aorta
ductus venosus
shunts blood returning from the placenta via the umbilical vein directly into the inferior vena cava, bypassing the liver
First trimester
heart begins to beat, cartilaginous skeleton begins to harden into bone, by 8 weeks most of organs have formed, the brain is fairly developed, and the embryo becomes known as the fetus
Second trimester
fetus undergoes tremendous growth, takes on a human appearance
Third trimester
rapid growth, antibodies are transferred to fetus at highest rate, eventually growth rate slows in ninth month
Birth
coordinated by prostaglandins and oxytocin
water breaking is the amniotic sac rupturing
myelin purpose and production
prevents signal loss or crossing of signals
produced by oligodendrocytes (CNS) or Schwann cells (PNS)
tracts (nervous system)
only one type of information
cell bodies of neurons in the same tract are grouped into nuclei
Glial cells- Astrocytes
nourish neurons and form the blood-brain barrier
Glial cells- ependymal cells
produce cerebrospinal fluid
Glial cells- microglia
phagocytic cells for the CNS
Glial cells- oligodendrocytes and Schwann cells
Oligodendrocytes (CNS) and Schwann cells (PNS) produce myelin
Action potential
Na+ influx open in response to reaching the threshold, causing depolarization
positive potential triggers Na+ channels to inactivate and K+ channels to open, causing repolarization
hyperpolarization occurs as K+ overshoots
Na+/K+ ATPase acts to restore resting potential and sodium potassium gradients
Neurotransmitters release
when action potential reaches the nerve terminal, Ca+ channels open, triggering fusion of the membrane-bound vesicles and exocytosis of the neurotransmitters