Biology Flashcards
4 tenets of cell theory
-all living things are composed of cells
-cell is basic functional unit of life
-cells only arise from preexisting cells
-cells carry genetic info in the form of deoxyribonucleic acid, the genetic material is passed from parent to daughter cell
Prokaryote vs eukaryote
Eukaryotes can be uni or multicellular and contain a true nucleus enclosed in a membrane with membrane bound organelles when prokaryotes do not
Nuclear pore definition
space in the nuclear membrane to allow for selective two way exchange of material between cytoplasm and nucleus
Linear DNA is wound around ___, which is further wound into strands called___
histones, chromosomes
Where is ribosomal RNA stored
nucleolus
inner membrane of mitochondria used for molecules and enzymes necessary for electron transport chain. What is the space inside this membrane called
cristae, the mitochondrial matrix
Extranuclear inheritance
Transmission of genetic material independent of the nucleus (think mitochondrial replication via binary fission
lysosomes
membrane bound structures containing hydrolytic enzymes capable of breaking down different substrates
Endoplasmic reticulum
series of interconnected membranes contiguous with nuclear envelope, double membrane of ER folded into numerous invaginations creating complex structures with central lumen, 2 varieties exist smooth (lipid and cell membrane synthesis) and rough (ribosomes)
golgi apparatus
stacked membrane bound sacs that receives material from ER and modifies them before repackaging and transferring to correct location
cytoskeleton
provides structure to cell to maintain shape and serves as a conduit for transport of materials around cells, 3 components microfilaments, microtubules, and intermediate filaments
microfilaments
solid polymerized rods of actin providing protection for a cell, actin filaments can also use ATP for generating movement by interacting with myosin. Also play a role in cytokinesis
microtubules
hollow polymers of tubulin proteins, radiate throughout the cell providing pathwasy ffor motor proteisn like kinesin and dynein to carry vesicles.
Cilia
Projections from a cell primarily involved in movement of materials along surface of the cell (think respiratory tract) composed of microtubules
flagella
involved in movement of the cell propelling composed of microtubules
9+2 structure
formation seen only in eukaryotic organelles of motility shared between cilia and flagella with 9 pairs of microtubules in outer ring and 2 in the center
intermediate filament
diverse group of filamentous proteins including keratin, help with structure of cell more rigid
4 tissue types
epithelial, muscle, connective, nervous tissue
parenchyma
functional tissue of an organ that is often epithelial cell in nature such as nephrons of kidney, hepatocytes, or acid producing cells of the stomach
basement membrane
joins epithelial cells together to an underlying layer of connective tissue
simple epithelium vs stratified vs pseudostratified
one layer of cells vs multiple layers vs appear to have multiple layers but are onlyone
stroma
support structure of organs composed of connective tissue
archea
single celled organism domain of life that are similar to bacteria but contain genes and metabolic pathways more similar to eukaryotes than to bacteria, they are notable to use alternative sources of energy, while some are photosynthetic many are chemosynthetic able to generate energy from inorganic compounds. Both eukaryotes and archea start translation with methionine, contain similar RNA polymerases, and associate their DNA with histones
Archea replication
they contain a single circular chromosome and divide by binary fission or budding
Examples of mutualistic symbiote bacteria
bacteria in the gut that produce vitamin K and biotin and also prevent overgrowht of harmful bacteria
Why are newborns given an injection of vitamin k
Because they have not been colonized with bacteria essential for producting vitamin k in the gut and thus clotting factors, they are at increased risk for hemorrhage
cocci vs bacilli vs spirilli
spherical vs rod shaped vs spiral shaped
facultative anaerobe
able to use oxygen for metabolism and switch to anaerobic metabolism if not
aerotolerant anaerobes
unable to use oxygen for metabolism but are not harmed by its presence in the environment
gram staining
a method to determine the type of cell wall in a bacteria of the 2 types, involves staining process with crystal violet stain follwed by a counterstain with safranin, if dark purple then gram positive, if pink red then gram negative
gram positive cell wall components
thick layer of peptidoglycan and lipoteichoic acid which the function is unkonwn but the human immune system may be activated by exposure to
gram negative cell wall components
thin peptidoglycan, abut directly to the cell membrane, also have outer membranes containing phospholipids and lipopolysaccharides that trigger immune inflammatory response very highly in humans
chemotaxis
ability of a cell to detect chemical stimuli and move tward or away from it
plasmids
additional dna acquired from exteneral sources not necessary for survival of prokaryote and therefore not part of the genome but may confer advantages
How do prokaryotes generate ATP?
lack mitochondria instead use cell membrane for ETC and generation of ATP
prokaryotic ribosome subunits vs eukaryoic
30s and 50s, eukaryotes are 40s and 60s (prokaryotes are much smaller)
binaryfission
form of asexual reproduction seen in prokaryotes, circular chromosome replicates attaches 1 to each side of cell wall and replicates while cell continues to grow in size eventually invaginating and forming 2 identical daughter cells, takes less steps than mitosis and thus is much more rapid
episomes
subset of plasmids able to integrate into genome of bacterium
transformation, conjugation, and transduction (3 methods of recombination for bacterial diversity)
transformation - integration of foreign genetic material into host genome often from spilled content of other bacteria
conjugation - bacterial form of mating sexual reproduction involving 2 cells forming a conjugation bridge that allows transfer of genetic material, the transfer is unidirectional with a donor male (+) to recipient female (-), the bridge is made of an appendage called a sex pili
Transduction - genetic recombo process that requires a vector such as a bacteriophage, involves the virus accidentally trapping a segment of host DNA during assembly and then releasing trapped DNA into a new host cell that it infects
Most well studied sex factor plasmid
F (Fertility) factor of e coli
High frequency of recombination
cells that have undergone a change where the sex factor plasmid (conjugation) also undergoes transformation integrating that plasmid into the DNA, now when a donor transfers they will attempt to send an entire copy of the genome into the recipient but this can cause the bridge to break before the full sequence is moved so there is random amounts DNA being sent between
bacterial growth pattern
in a new environment, first there is a lag phase as bacteria adapt to new conditions, then there is an exponential or log phase, and reduction of resources then causes a stationary phase, and then a death phase after resources are deplete
why are enveloped viruses easier to kill
the envelope surrounds the capsid protein coat and is very sensitive to heat, detergents, and desiccation
single stranded viruses may be positive sense or negative sense. meaning…
positive implies the genome may be directly translated to functiona proteins by the ribosomes of the host cell just like mRNA, negative sense RNA viruses require synthesis of an RNA strand complementary to a negative sense RNA strand which can then be used as a template for proteins ynthesis. These negative must carry RNA replicase in the virion to ensure the right strand is synthesized
retroviruses
enveloped, single stranded RNA viruses that carry an enzyme known as reverse transcriptase which synthesizes DNA from sinlge stranded RNA, that DNA then integrates with the host cell genome where it is replicated and transscribed as if it were the host cells own DNA
methods of infection by a virus
either injection of the genetic material alone through a tail sheath or enveloped viruses fuse with the cell membrane and enter the cell bringing in the entire viral capsid
extrusion
a method of virus leaving the cell by fusing with the plasma membrane, allows for survival of the host cell and continued use of said cell by the virus opposed to cell death and/or lysis that spills it out, that virus is in a productive cycle
lytic vs lysogenic cycles
lytic cycle is bacteriophage where it makes maximal use of cell machinery with little regard to survivial of host cell, lysing it and spreading and is virulent
lysogenic cycle the event a virus integrates into the host genome as a provirus it will replicate as part of the bacteria’s replication cycle and can remain indefinitely there but environmental factors such as light or radiation or chemicals can cause it to revert to lytic at some point
prions
infectious nonliving proteins that cause disease by triggering misfolding of other proteins usually conversion from alpha helical structure to beta pleated sheets, reduced solubility of the protein and the cells ability to degrade the misfolded protein causes function of the cell and eventually tissue to reduce
viroids
small pathogens composed of short circular single stranded RNA that can infect plants, a few examples of human viroids do exist that are innocuous but can cause disease with some coinfections
autosomal/somatic cells are ___ploid, while germ cells are ___ploid
diploid (2 copies of each chromosome) haploid (1 copy)
4 stages of the cell cycle and cells that do not divide live in this phase
G1, S, G2, (interphase about 90% of the time) and M. G0 is an offshoot of G1 that cells that live and serve function without any preparation for division
during interphase, are chromosomes visible with light microscopy?
No, they are in a less condensed form known as chromatin, during mitosis, however, it s prefererable to condense DNA into chromosomes to prevent loss of any genetic material
restriction point
preventative point to prevent passage from G1 to S phase that requires certain criteria suchas the proper complement of DNA
G1 phase processes
create organelles and protein production and increase in size
S stage processes
cell replicates its genetic material so each daughter will have identical copies, after replication, each chromosome consists of two identical chromatids bound at a centromere
Does the ploidy of a cell change during the S phase of the cell cycle?
No, even though 92 chromatids are present after, there are still only 46 chromasomes
G2 phase processes
Cell checks to make sure DNA replication proceeded correctly in S phase, checks there are enough organelles and cytoplasm to divide between 2 daugher cells
M phase
mitosis with its 4 phases and cytokinesis
4 phases of mitosis
prophase - chromatin condenses into chromosomes, spindle forms
metaphase - alignment of chromosomes at metaphase plate
anaphase - sister chromatids separate and are pulled to opposite poles of the cell by shortening kinetochore fibers
telephase and cytokinesis- spindle apparatus disappears, nuclear membrane reforms around each set of chromosomes, and nucleoli reappear, chromosomes uncoil, resuming interphase form, cytoplasm and organelles divide
the main protein in charge of g1/s phase transition and how is this related to cancer
p53, one of the most common mutations found in cancer is of the gene that produces p53 called TP53 that then results in cell cylce not stopping torepair cancerous DNA
meiosis 1 results in homologous chromosomes being separated generating haploid daughter cells, and is known as ____ division, meiosis ii is similar to mitosis in that it results in separation of sister chromatids, and is known as ___ divison
reductional, equational
crossing over
a process in meiosis prophase 1 in which chromatids of homologus chromosomes may break at a point of contact called a chiasma and exchange pieces of dna, increasing the diversity
mendels 2nd law of independent assortment
inheritance of one allele has no effect on the likelihood of inheriting certain alleles for other genes because of crossing over
stages of meiosis
meiosis 1 (prophase 1, metaphase 1, anaphase 1, telophase 1) and meiosis II (prophase 2, metaphase 2, anaphase 2, telophase 2)
difference between metaphase 1 of meiosis and mitosis metaphse
in mitosis, each chromosome is lined up at the metaphase plate by 2 spindle fibers, in meiosis, homologous chromosomes are lined up across from each other at metaphase plate and are held by one spindle fiber
mendels first law of segregation
accounts for the process of anaphase 1 of meiosis where homologous pairs separate and are pulled to opposite poles of the cell called disjunction, each chromosome therefore of paternal origin separates from homologue of maternal origin and either chromosome can end up in either daughter cell, randomly
mitosis n representation v s meiosis
2n to 2n, meiosis is 2n to n to n
difference between homologus chromosomes vs sister chromatids
homologous chromosomes are of each paternal and maternal origin, sister chromatids are identical copies
what pair of chromosomes determines biological sex
the23rd pair
what genetic information does the y chromosome carry
very little, the SRY gene which encodes transcription factor to initiate testis differentation and thus formation of male gonads, therefore in absence of y chromosome all zygotes will be female
two functional components of the testes
seminiferous tubules (produce sperm and nourished by sertoli cells), and interstitial cells (leydig cells) which secrete testosterone
where are formed sperm stored until ejacullation
epididymis
sperm pathway from epididymis
vas deferens to ejaculatory duct on posterior edge of the prostate gland called the ejaculatory duct, the two ejaculatory ducts fuse to form the prostatic urethra which caries sperm through the penis and out the body
3 glands that mix sperm with seminal fluid upon ejaculation
seminal vesicles (fructose), prostate gland (alkaline fluid)
bulbourethral glands - clear viscous fluid to lubricate urethra (precum)
diploid stem cells of males in the seminiferous tubules and what do these develop into
spermatogonia, after replicating genetic material are diploid primary spermatocytes, first division results in haploid secondary spermatocytes, then 2nd division causes haploid spermatids which then mature into spermatozoa
acrosome
cap on the sperm head that is derived from golgi apparatus and needed to penetrate ovum
components of ovaries
follicles, multilayered sacs that contain and protect immature ova
ovulation
process in which between puberty and menopause one egg is ovulated into the peritoneal sac lining the abdominal cavity that is then drawn into the fallopian tube or oviduct which is lined with cilia to propel the egg forward, the fallopian tubes are connected to the muscular uterus, lower end of this is the cervix, which connects the vaginal canal, outer genitalia are called vulva
unlike spermatogenesis, oogonia in a woman is…
not unlimited, by birth all the oogonia have already undergone DNA replication and are considered primary oocytes (2N), and are arrested in prophase 1