Biological molecules Flashcards

You may prefer our related Brainscape-certified flashcards:
1
Q

What percentage of cells are made up of water, and how do most ionic substances behave in this environment?

A

Cells are 60-70% water, so most ionic substances are separated into their constituent oppositely charged ions.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

What are the important functions of Na+ (sodium ions) in the body?

A

Helps conduct nerve impulses
Influences muscle contraction and relaxation
Balances fluid and electrolytes, regulates blood pressure
Osmotic effect helps cells take up water
Most important for fluid regulation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What happens in the body during hypernatremia and how is it treated?

A

Hypernatremia causes water to be drawn out of brain cells, leading to dehydration and shrinkage. It is caused by inadequate water intake or excessive water loss (regulated by vasopressin, ADH). Treatment: hypotonic fluids.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

How does hyponatremia manifest and how is it treated?

A

Hyponatremia causes edema and neurologic symptoms. In hypovolemic hyponatremia (caused by vomiting), it is treated with isotonic solutions. In hypervolemic hyponatremia, it is treated with diuresis.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Why are premenopausal women more susceptible to acute hyponatremia?

A

Oestrogen and progesterone increase vasopressin levels, causing kidneys to retain more water and inhibit the Na-K pump, which prevents the excitation of brain cells.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

What role does Na+ play in glucose and amino acid transport?

A

Na+ co-transports glucose and amino acids into cells by being actively transported out of epithelial cells in the small intestine. This creates a concentration gradient, allowing Na+ to re-enter cells through co-transport proteins along with glucose and amino acids.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

What are the functions of K+ (potassium ions) in the body?

A

Regulates intracellular osmolarity and acid-base balance
Maintains normal cardiac rhythm
Helps transport insulin into cells
Influences muscular activity and nerve function
Allows water reabsorbption in kidneys

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

What is the role of K+ in nerve cell repolarization?

A

Potassium ions move out of the axon through voltage-gated channels, returning the axon’s membrane potential to normal (about -70mV), a process called repolarization.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

What is the function of Ca2+ (calcium ions) in the body?

A

Keeps bones and teeth strong
Supports blood circulation
Aids in muscle contraction by facilitating actin-myosin cross-bridge formation
Helps in neurotransmission and activates transcription factors
Helps release hormones in clotting process
Regulates protein channels affecting permeability of membranes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

How does Ca2+ play a role in muscle contraction?

A

When an impulse reaches a muscle fiber, Ca2+ is released from the sarcoplasmic reticulum, binding to troponin C. This removes tropomyosin from myosin-binding sites on actin, allowing muscle contraction.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What is the role of Mg2+ (magnesium ions) in the body?

A

Can reduce blood pressure and lower the likelihood of arrhythmias
Counteracts calcium in muscle contraction and reduces muscle cramps by inhibiting over excitation of nerves
Important in protein synthesis and energy metabolism

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What are the functions of Cl- (chloride ions) in the body?

A

Regulates fluid and electrolyte balance and pH by moving out of RBCs
Forms HCl in stomach acid
Assists in transmission of nerve impulses
Helps in CO2 transport in blood
Used by WBCs to kill bacteria

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

What is the role of OH- ions in biological systems?

A

OH- ions are essential for hydrogen bonding.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

What is the function of PO4^3- (phosphate ions) in the body?

A

Involved in cell growth, energy generation, and ATP storage
Forms bones and teeth
Acts as a buffer
Helps deliver oxygen to the body
The bond between phosphate groups stores energy in ATP, which is released when broken

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

Why is maintaining pH at 7.4 important in the body?

A

pH 7.4 is the optimum for enzyme function. Small changes in pH, especially in the acidic range, can lead to large changes in the number of H+ ions, affecting secondary and tertiary protein structure by binding of H+ ions and enzyme activity.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

How do buffers maintain pH stability in the body?

A

Buffers take up or release H+ ions in reversible reactions, preventing rapid changes in pH. HCO3- (bicarbonate) acts as a weak acid/base, providing a mechanism to stabilize pH.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

What is the function of Fe2+ (iron ions) in the body?

A

Fe2+ is part of hemoglobin and myoglobin, crucial for oxygen transport
Involved in electron transfer during respiration as part of cytochromes in the electron transport chain (switches between oxidation states)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

What is the role of Folic Acid (Vitamin B9) in the body?

A

Required to generate red blood cells
Helps in the development of the brain, skull, and spinal cord in embryos, preventing birth defects like spina bifida
Improves DNA replication and transcription by increasing cell division and DNA replication rates
Needed for methylation and DNA base synthesis

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

How does Methotrexate affect folic acid metabolism?

A

Methotrexate is an anti-folate drug that inhibits folate metabolism, preventing cancer cell proliferation.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

What are the key properties of water in biological systems?

A

High melting and boiling points
Polar solvent for most cellular reactions and transport medium for dissolved metabolites
Maximum density at 4°C (ice insulates water below)
High specific heat capacity (important for temperature regulation of blood and heat transfer around body via blood and tissue fluid)
High latent heat of vaporization (important for sweating)
Non-compressible, important in hydraulic mechanisms
Cohesive and adhesive properties (important in blood circulation)
High surface tension (surfactant in lungs)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

What are the important uses of water in the body?

A

Sweating and temperature regulation
Transport of substances in blood, tissue fluid, and urine
Electrolyte balance
Solvent for cell reactions
Reactant in hydrolysis reactions
Lubrication and providing surface tension in alveoli preventing collapse

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

What are the main compartments of body fluids?

A

Intracellular fluid: ⅔ of body fluid, inside cells
Extracellular fluid: includes plasma (intravascular) which uses capillary membrane to separate from tissue fluid (interstitial), and transcellular fluid (e.g., spinal fluid, joint fluid, pericardial and peritoneal)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

How do you measure Total Body Water (TBW)?

A

TBW can be measured by using substances that pass through the cell membrane.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

How do you measure extracellular fluid (ECF) and plasma volume?

A

ECF: Measured by substances that pass through the capillary membrane but not the cell membrane.
Plasma volume: Measured by substances that do not pass through either the capillary or cell membrane.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
25
Q

What is the general formula for carbohydrates?

A

Cx(H2O)y

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
26
Q

What are monosaccharides?

A

Simple sugars, such as triose sugars (e.g., pyruvate in respiration), pentose sugars (e.g., DNA, RNA), and hexose sugars (e.g., glucose (can cross the blood brain barrier to nourish brain cells, sucrose, galactose).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
27
Q

What are the two types of glucose isomers?

A

Alpha and beta glucose.

28
Q

How are disaccharides formed?

A

Disaccharides are formed through condensation reactions between two monosaccharides, creating a glycosidic bond catalyse by specific enzymes depending on which OH groups are interacting

29
Q

What is the Benedict’s test used for?

A

It is used to test for reducing sugars, which can donate electrons to a carbonyl group and be oxidized.

30
Q

What is the process of hydrolysis for disaccharides and polysaccharides?

A

Hydrolysis reactions break down disaccharides and polysaccharides into monosaccharides, which occurs in the gut, muscles, and liver. When using HCl it forms an eldehyde or ketone which can be why ketones are found in diabetic px urine

31
Q

What is glycogen and why is it important?

A

Glycogen is a polysaccharide energy store in animals, made of alpha glucose units. It has more 1-6 glycosidic bonds for rapid breakdown, especially in muscles and liver.

32
Q

What are the primary uses of lipids?

A

Cell membranes
Energy storage
Absorption of vitamins
Production of prostaglandins for cell communication

33
Q

What is the difference between saturated and unsaturated fats?

A

Saturated fats: Solid at room temperature, no double bonds between carbons.
Unsaturated fats: Liquid at room temperature, contain one or more double bonds (kinks in the chain).

34
Q

What is the role of phospholipids in cell membranes?

A

Phospholipids are amphipathic, with hydrophilic heads and hydrophobic tails, forming the bilayer of cell membranes. This structure allows compartmentalization of cellular reactions

35
Q

What is the Emulsion test?

A

The emulsion test detects lipids by dissolving the lipid in ethanol, then mixing with water. A milky white emulsion indicates the presence of lipids.

36
Q

What are the key functions of proteins in the body?

A

Enzymes for metabolism
Hormones
Muscle contraction
Antibodies
Blood clotting
Oxygen transport in hemoglobin
Protein channels in cell membranes
Helps in cell division

37
Q

What are fibrous proteins?

A

Long, parallel polypeptide chains with occasional cross links, insoluble in water, and tough, providing structural functions (e.g., collagen in tendons and bones).

38
Q

What is the role of globular proteins?

A

Globular proteins have complex tertiary + quaternary structures and are soluble in water. They include enzymes, antibodies, and hormones (e.g., hemoglobin). Form a colloid in water which hold molecules in place in cytoplasm

39
Q

What is the Biuret test for proteins?

A

The Biuret test detects proteins by turning from blue to lilac in the presence of peptide bonds.

40
Q

Function of NH4+

A

Deamination in Liver

41
Q

Haematocrit

A

Fraction of blood that is RBCs

42
Q

To measure volume of fluid in a cavity

A

Use dilution principle: labelled radioactive isotope- volume of compartment = volume of isotope divided by its concentration

43
Q

How is galactose converted into glucose?

A

Specific enzymes can change the structure of galactose to form glucose molecules to be used in respiration

44
Q

What experimental analysis can be done on carbohydrates?

A

Paper chromatography of monosaccharides, Benedict’s test on reducing sugars, Using a colorimeter to measure glucose concentrations

45
Q

Why is cellulose important in our diet?

A

resistant to human intestinal enzymes, requires help of gut bacteria- fibres (slow absorption of simple sugars to maintain correct levels of glucose, add weight to waste to prevent constipation, good for heart health)

46
Q

Why are polysaccharides ideal storage molecules?

A

-Compact molecules so large numbers stored in cells
- Glycosidic bonds easily broken so rapid energy release in respiration
- Don’t have osmotic effect in cell as not very soluble

47
Q

Structure and formation of triglycerides?

A

formed in condensation reaction between -COOH of fatty acid and -OH of glycerol molecule to form ester bond

48
Q

How do trans fats link to CHD?

A

trans fatty acids where H is on opposite side of double bond then it is linked with coronary heart disease as they cant form enzyme substrate complexes and are not metabolised-increases LDL in blood causing CHD by transporting extra cholesterol throughout blood

49
Q

Uses of phospholipids in body?

A

oxidised in respiration bonds are broken and large amounts of ATP is produced- release 3 times as much energy as carbs,
hydrophobic so important in waterproofing,
good insulators- fatty myelin sheath insulates nerve impulses to travel quicker (prevents leakage of charged ions in neurons),
insulate against heat loss,
do not dissolve in water so important to be cell membranes in aqueous environment and do not interfere with chemical reactions,
respiration of lipids releases large amounts of metabolic water,
adipose tissue protects delicate organ structures

50
Q

Structure of phospholipids?

A

-OH group of glycerol undergoes esterification reaction with PO4 ion, fatty acid chains are neutral and insoluble in water (hydrophobic) whereas phosphate head carrier negative charge and is soluble in water (hydrophilic and readily dissolves in water)

51
Q

How is membrane protein orientation controlled?

A

weak hydrophobic interactions allow fluidity but still hold proteins within the layer

52
Q

Function of cholesterol in cell membranes?

A

also amphipathic, created in liver and transported via the blood, affects the fluidity and permeability of the membrane by disrupting close packing of phospholipids increasing rigidity of the membrane and also fills gaps to prevent water soluble molecules from entering the cell, also used to produce steroid hormones eg progesterone, oestrogen and testosterone

53
Q

Function of prostaglandins?

A

polyunsaturated fats are precursor to these hormones which stimulate endothelial cells lining blood vessels to release nitric oxide which is a vasodilator- decreasing resistance to flow and reduces blood pressure, can also reduce LDL cholesterol and lower risks of heart disease, omega 3 can lower plasma triglycerides which reduces risks if heart disease and encourages development of eyes and brains of young infants

54
Q

Why do proteins have enantiomers?

A

chirality and can form enantiomers but proteins only made of levo orientated enantiomers
Flexible bonds holding amide group to alpha carbon which allows freedom of rotation for folding of the protein

55
Q

Formation of proteins?

A

amino group and carboxyl groups react in condensation reaction to form a peptide bond (stronger as sharing of electrons but same structure)

56
Q

Bonding in proteins?

A
  • Hydrogen: between carboxyl and amino groups, many hold protein together firmly, break easily and reform if pH and temp conditions change
  • Disulphide bridges: cysteine molecules, oxidation reaction resulting in strong covalent bonding ( common in proteins secreted by cells eg insulin)
  • Ionic bonds: between strongly positive and negative R groups, broken by pH changes
57
Q

Levels of structure?

A

Primary: sequence of amino acids held together by peptide bonds
Secondary: arrangement of primary structure into regular repeating structure
held by hydrogen bonds eg alpha helix- spiral coil or beta pleated sheets: held
by hydrogen bonds (most fibrous proteins)
Tertiary structure: 3D organisation involves Hbonds, ionic bonds and
disulphide bridges (globular proteins)
Quaternary structure:separate polypeptide chains fitting together in 3D eg Haemoglobin

58
Q

Uses of fibrous proteins in body?

A

connective tissues in tendons (elastin- stretch and return to original shape), matrix of bones, muscles, keratin for hair and nails, walls of blood vessels, cornea of eyes

59
Q

Structure of collagen?

A

3 polypeptide chains arranged in triple helix held by H bonds and found in fibrils These fibres combined with bone tissue to form matrix so with disease such as osteogenesis imperfecta the triple helix is malformed and bone is brittle as it lacks tensile strength, covalently bonded cross links form between R groups of proline, glycine and hydroxyproline to form fibrils with staggered ends, stable molecule as proline and hydroxyproline repel each other

60
Q

Function of collagen?

A

strength to tendons, ligaments and bones, high tensile strength

61
Q

Structure of Haemoglobin?

A

polypeptide chains each associated with haem group (can reversibly combine with oxygen) so conjugated protein which are held together by disulphide bridges, each subunit has the classic structure of a globular protein with 2 alpha globins and 2 beta globins, hydrophilic R groups facing outwards to maintain solubility

62
Q

Intracellular enzymes?

A

catalase: converts hydrogen peroxide to water and oxygen as it is harmful to body

63
Q

Extra cellular enzymes?

A

Extracellular: digestive enzymes containing hydrolytic enzymes
INSULIN: 2 polypeptide chains held together by 3 disulphide bridges

64
Q

Lipoproteins?

A

Protein conjugated with lipid group, transport cholesterol in blood, LDL transports it
around body in blood, HDL transports it to liver in blood to be metabolised
(more compact due to more protein)

65
Q

Glycoproteins?

A

Protein conjugated with carb group, hold on to water, more difficult for proteases to
breakdown, useful as lubricants eg synovial fluid and mucus- slippery +
viscous so reduce friction, protects protein walls in stomach from digestion

66
Q

What is proteolysis?

A

in digestion- HCl unfolds chain then pepsin make them into smaller peptide chains when more enzymes break them down into dipeptides which are broken down into amino acids in intestinal cells and used to make enzymes or new intestinal cells as well as being transported in bloodstream to other parts of the body

67
Q

How can amino acids be identified?

A

chromatography techniques: use ninhydrin which reacts with amino acids to produce a violet colour