Bioenergetics Flashcards
Free energy
the energy available that can be converted to do work
Gibbs free energy (G)
maximum amount of non-PV work that can be performed within a closed system in a completely reversible process at a constant temperature and pressure. ◦ Indicates the total amount of chemical potential energy available in a system ◦ Reflects the overall favorability of the rxn that it describes
∆G equation
∆G = ∆H - T∆S
-∆G
spontaneous reaction = exergonic = will release energy that can be used to perform work in the surroundings
+∆G
non-spontaneous reaction = endergonic = require work to be put in to make them go forward
∆G vs ∆G˚
while ∆G = max free energy that can be produced, ∆G˚ = standard free energy change = the free energy that occurs if the concentration of reactants and products is 1 M; temp = 298K ∆G = this is the change of Gibbs free energy for a system. It is the max free energy that can be produced; applicable under nonstandard conditions ∆G˚ = this is Gibbs energy change for s system under standard conditions; it’s the free energy that occurs if the concentration of reactants and products is 1 M
Equilibrium; ∆G˚ =
Equilibrium- ratio of products:reactants = Keq ◦ ∆G˚= -RTlnKeq ◦ R = ideal gas constant (8.314 J/mol・K); T = temperature in K; Keq = equilibrium constant ◦ ↑ Keq value = more + ln value = more (-) ∆G˚
Not at equilibrium; ∆G =
∆G = ∆G˚ + RTlnQ R = ideal gas constant; T = temperature in K; Q = reaction quotient = the ratio of products to reactants @ a given time
Law of mass action:
the rate of the chemical rxn is directly proportional to the product of the activities or [reactants]; explains & predicts behaviors of solutions in dynamic equilibrium. Only includes gases & aqueous species.
Keq:
The ratio of products to reactants @ equilibrium; each species is raised to its stoichiometric coefficient Keq = products / reactants
∆H in a spontaneous/endothermic rxn
decreasing
∆H in a nonspontaneous/exothermic rxn
increasing
∆S in a spontaneous rxn
increasing
∆S in a nonspontaneous rxn
decreasing
When Q < Keq, ∆G
∆G < 0 (proceeds in the forward direction)
When Q > Keq, ∆G
∆G > 0 (proceeds in the reverse direction)
When ∆G˚ is — , what direction and what’s favored?
Forward direction, favors products w/ a Keq > 1
When ∆G˚ is +, what direction and what’s favored?
Reverse direction, factors reactants w/ a Keq < 1
Le Chatlier’s Principle
if an equilibrium mixture is disrupted, it will shift to favor the direction of the reaction that best facilitates a return to equilibrium
increase concentration of reactants shifts equilibrium….
right
decrease concentration of products shifts equilibrium…
right
increase concentration of products shifts equilibrium….
left
decrease concentration of reactants shifts equilibrium…
left
increase the temp of an endothermic reaction shifts equilibrium …
Right
How is ATP formed?
1 adenosine + 3 phosphate groups Adenosine is a nucleoside (adenine, a nitrogenous base, and a 5-carbon sugar ribose) Bonds b/t the phosphates = phosphoanhydride bonds (high energy) Formed from substrate-level phosphorylation & oxidative phosphorylation; ∼30 kJ/mol of energy
FAD is the (oxidized/reduced) form and (accepts/donates) electrons in glycolysis
FAD is the (oxidized/form and (accepts) electrons in glycolysis
Flavoproteins
Flavoproteins are electron carriers in oxidation-reduction reactions = FAD, FMN
FAD
electron carrier (FADH₂ = reduced form) that is oxidized @ the 2ⁿᵈ complex in the ETC
FAD⁺
an oxidizing agent in the TCA
FMN
a cofactor for the ETC’s Complex I enzymatic activity.
Simple monomeric sugars generic formula
Cn(H₂O)n
Complex sugars (water loss occurs) generic formula
Cn(H₂O)m
Nomenclature of all sugars = D- & L- forms of glyceraldehyde
◦ Aka- the absolute configuration for a carbohydrate is assigned based on the last chiral carbon in the chain as compared to the configurations of glyceraldehyde; L and D are based on the chiral carbon furthest from the carbonyl group. ◦ Those with the highest-#d chiral carbon with the OH group on the right in a Fischer projection = D sugars (naturally occurring) ◦ OH group on left = L sugars
Same D- and L- forms of the same sugar =
enantiomers
D/L =
◦ D/L = absolute configuration, assigned based on the chirality of the carbon atom furthest from the carbonyl group ◦ every chiral center in D-glucose has the opposite configuration of L-glucose
α/β = anomeric configuration
‣ The α form = anomeric carbon is in the axial position (OH below the plane) ‣ The β form = anomeric carbon is in the equatorial position (OH above the plane)
Diastereomers
nonsuperimposable configurations of molecules w/ similar connectivity; differs at least one but not all chiral carbons
epimers
different configuration @ exactly 1 chiral carbon
anomers
subtype of epimers that differ at the chiral, anomeric carbon
Aldoses
carbohydrates that contain an aldehyde group as their most oxidized functional group
Ketoses
has a ketone as their most oxidized functional group
Pyranose
6-membered hexagonal shaped
Furanose
5-membered pentagonal shaped
For classification as a carbohydrate, 3 criteria:
◦ At least a 3-carbon backbone ◦ An aldehyde or a ketone group ◦ At least 2 hydroxyl groups
Simplest smallest carbohydrates
glyceraldehyde & dihyrdroxyacetone
Fructose forms ____ when carbon 5 attacks the carbonyl carbon
Fructose forms furanose when carbon 5 attacks the carbonyl carbon
Glucose forms _____ when carbon 5 attacks the carbonyl carbon
Glucose forms pyranose when carbon 5 attacks the carbonyl carbon
Haworth Diagram
• Down right • Up left • As you fill in the substituents, those on the right side of the Fischer diagram will point down, and those on the left side will point up. -OH group on the anomeric carbon (Fischer carbonyl) can be either UP (β) or down (α) • The CH₂OH group on absolute configuration carbon (C-5) points UP for D and down for L. • In planar conformation, everything = eclipsed • In chair conformation, everything = staggered • Everything in between = partially eclipsed
Glycosidic linkage
an acetal linkage that chains together monomers to form disaccharides, oligosaccharides, and polysaccharides; also terms the linkage b/t sugar and base in nucleotides
Monosaccharides:
simple sugars; formula (CH₂O)n; typically have 3-7 C.
- Position of the carbonyl group (C=O) can be used to categorize the sugars (aldose vs ketone)
- They are named according to their # of carbons (trioses = 3 C; pentoses = 5 C; hexoses = 6 C)
glucose
(aldohexose); main fuel source for the organism
Fructose (ketohexose); commonly used as sweetener; produced by many plants/fruits
Galactose (aldohexose); found in dairy products & sugar beets; can be rapidly converted to glucose
Mannose (aldohexose)
Sugars that can be oxidized
Sugars that can be oxidized = reducing agents; can be detected by reacting w/ Tollens’ or Benedict’s reagents
Sugars + COOH and COOH derivatives→
Sugars + COOH and COOH derivatives → esters
Phosphorylation- phosphate phosphate group from ATP + Sugar =
Phosphorylation- phosphate phosphate group from ATP + Sugar = phosphate ester
Glycoside formation
Glycoside formation: basis for building complex carbs; requires the anomeric carbon to link to another sugar
Disaccharides
formed when two monosaccharides join together via a dehydration rxn (aka condensation rxn or dehydration synthesis). Here, the hydroxyl group of one monosaccharide combines with the H of another, releasing a molecule of water and forming a covalent bond = glycosidic linkage
Sucrose: made from α-glucose and β-fructose joined @ the hydroxyl groups on the anomeric carbons (creating acetals); glycosidic bond is formed b/t C1 of the α-anomer of glucose & C2 of the β-anomer of fructose; Glu(α1→β2)Fru
Lactose: requires lactase to be hydrolyzed; made from β-galactose and α/β-glucose joined by a 1,4-linkage; Gal(β1→4)Glu
Maltose: two glucose molecules; produced when amylase breaks down starch; Glu(α1→4)Glu
Polysaccharides
long chains of monosaccharides linked by glycosidic bonds
Starch
main energy storage form for plants; made of glucose molecules joined by α-1,4-linkages
Amylose
linear polymer of glucose; connected by α-1,4-glycosidic bonds; 20%-30% of starch
Amylopectin
made of α-1,4-glycosidic bonds and α-1,6-glycosidic branches every 24-30 units; 70%-80% of starch
Glycogen:
main energy storage form for animals; has α-1,4-glycosidic bonds and α-1,6-glycosidic bonds
◦ Humans store glycogen in:
‣ Liver- hepatocytes; regulates BGL and provides cells w/ energy ‣ Muscle- can be broken down to power glycolysis
◦ More heavily branched than amylopectin; branching occurs every 8-12 units
Cellulose
main structural component for plant cell walls; main source of fiber for humans; made of repeating β-1,4glycosidic bonds
Peptidoglycan
major component of bacterial cell walls; polymer of carbohydrates that have been modified w/ amino acids
Chitin
made of N-acetylglucosamine; connected by β-1,4-glycosidic bonds; major component of cell walls in the exoskeletons of crustaceans, insects, and fungi
Glycolysis converts ______ to _____.
It takes place in the ______
Key enzymes include (3)
_____ are made for every _____
Glycolysis converts glucose (6-C) to 2 molecules of pyruvate (3-C each).
Takes place in the cytosol.
Key enzymes: hexokinase, phosphofructokinase, pyruvate kinase.
2 NADH made for every glucose
Steps in the investment phase of glycolysis (5) with their enzymes