Biodiversity Flashcards

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1
Q

What Is A Species?

A

They are capable of breeding to produce living, fertile offspring.

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2
Q

The Binomial System?

A

Universal system based on Latin/Greek names,

The first name is called the generic name and denotes the genus to which the organism belongs. This is equivalent to the surname used to identify people and shared by close relatives,

The second name is the specific name and denotes the genus to which the organism belongs. This is equivalent to the first (or given) name used to identify people. However, this name is never shared with other species.

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3
Q

Rules Of Binomial System?

A

Names are printed in italics or, if handwritten, are underlined to indicate that they are scientific names,

First letter of the generic name is upper case, but the scientific name is lower case,

If the specific name is not know, it can be written as ‘sp’ E.g. Felix sp.

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4
Q

Courtship Behaviour?

A

Courtship behaviour allows species to reproduce when a female is producing eggs,

Courtship behaviour helps to achieve this by:
- Recognise members of their own species; to ensure mating only takes place between members of the same species, resulting in fertile offspring,

  • Identify a mate that is capable of breeding; because both partners need to be sexually mature, fertile and receptive to mating,
  • From a pair bond; that will lead to successful mating and raising of offspring,
  • Synchronise mating; so that it takes place when there is the maximum probability of the sperm and egg meeting,
  • Become able to breed; by bringing a member of the opposite sex into a physiological state that allows breeding to occur.
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5
Q

Females?

A

Females of many species undergo a cycle of sexual activity in which they can only conceive during a short period of time, around the time they are producing eggs,

Courtship behaviour is used by males to determine weather the female is at the perceptive stage,

If she responds with an appropriate behaviour, courtship continues and is likely to result in offspring,

If the female is not receptive, she will exhibit a different pattern of behaviour and the male will cease to court her, turning attention elsewhere.

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6
Q

The Principles Of Classification?

A

Organising species into groups,

This is called taxonomy,

Two main forms of biological classifications, each with a different purpose:

  • Artificial classification,
  • Phylogenetic classification.
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7
Q

Artificial Classification?

A

Type of classification,

Divides organisms according to differences that are useful at the time,

Such features may include colour, size, number of legs, leaf shape, etc,

These are described as analogous characteristics where they have the same function but do not have the same evolutionary origins,

E.g. the wings of butterflies and birds are both used for flight but they originated in different ways.

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8
Q

Phylogenetic Classification?

A

Type of classification,

Is based upon the evolutionary relationships between organisms and their ancestors,

Classifies species into groups using shared features derived from their ancestors,

Arranges the groups into a hierarchy, in which the groups are contained within larger composite groups with no overlap,

Relationships in phylogenetic classification are partly based on homologous characteristics, which have similar evolutionary origins regardless of their function,

E.g. arm of human and wing of bird both have the same basic structure and evolutionary origins and therefore homologous.

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9
Q

Taxonomy?

A

Each group with a phylogenetic classifications is called a taxon (plural taxa),

Taxanomy is the study of these groups and their postitions in the hierachial order where they are known as taxonomic ranks,

Domain - highest taxonomic rank and the three are; Bacteria, Archaea and Eukarya.

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10
Q

Bacteria?

A

A group of single-celled prokaryotes with the specific features:

  • Absense of membrane-bounded organelles such as nuclei or mitochondria,
  • Unicellular, although cells may occur in chains or clusters,
  • Ribosomes are smaller than in Eukaryotic cells,
  • Cell walls are present and made of murein (but never chitin or cellulose),
  • Single loop of naked DNA made up of nucleic acids but no histones.
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11
Q

Archaea?

A

A group of single-celled prokaryotic that were originally classified as bacteria which they resemble in appearance,

They differ from bacteria because:

  • Their genes and protien synthesis are more similar to eukaryotes,
  • Their membranes contain fatty acid chains attached to glycerol by ether bonds,
  • There is no murein in their cell walls,
  • They have a more complex form of RNA polymerase.
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12
Q

Eukarya?

A

A group of organisms made up of one or more eukaryotic cells,

Their features are:

  • Their cells possess membrane-bounded organelles such as mitochondria and chloroplasts,
  • They have membranes containing fatty acids atached to glycerol by ester bonds,
  • Not all possess cells with a cell wall, but where they do it contains no murein,
  • Ribosomes are larger than bacteria and archaea.
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13
Q

Eukarya Domain?

A

Is divided into 4 kingdoms:

  • Protoctista,
  • Fungi,
  • Plantae,
  • Anamalia.
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14
Q

Phyla?

A

The largest group within each kingdom,

Organisms in each phylum have a body plan radically different from organisms in any other phylum.

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15
Q

Class?

A

The second largest group within a phyla,

Diversity within each each phylum allows the organism to be divided into classes.

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16
Q

Order Of Ranks In Taxonomy?

A
Kingdom,
Phylum,
Class,
Order,
Family,
Genus,
Species.
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17
Q

Order?

A

Each class is divided into orders of organisms that have additional features in common.

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18
Q

Family?

A

Each order is divided further into families and at this level the differences between organisms are less obvious.

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19
Q

Genus?

A

Each family is divided into genera and genus (singular).

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20
Q

Species?

A

Each genus is divided into species.

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21
Q

Phylogeny?

A

The hierarchical order of taxonomic ranks is based upon the supposed evolutionary line of descent of the group members,

This evolutionary relationship between organisms is known as phylogeny,

The term is derived from the word ‘phylum’, which, in classification, is a group of related or similar organisms,

The phylogeny of an organism reflects the evolutionary branch that led up to it,

The phylogenetic relationships of different species are usually represented by a tree-like diagram.

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22
Q

Phylogenetic Tree?

A

The phylogenetic relationships of different species are usually represented by a tree-like diagram, called a phylogenetic trees,

In these diagrams, the oldest species is at the base of the tress while the most recent ones are represented by the ends of the branches.

Show common ancestor.

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23
Q

Biodiversity?

A

General term to describe variety in the living world,

Refers to the number and variety of living organisms in a particular area and has three components.

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24
Q

Components Of Biodiversity?

A

Three components of biodiversity:

  • Species diversity,
  • Genetic diversity,
  • Ecosystem diversity.
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25
Q

Species Richness?

A

A measure of species diversity,

Is the number of different species in a particular area at a given time (community),

Two communities may have the same number of species but the proportion of the species may differ.

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26
Q

Species Diversity?

A

Refers to the number of different species and the number of individuals of each species within any one community.

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27
Q

Genetic Diversity?

A

Refers to the variety of genes possessed by the individuals that make up a population of a species.

28
Q

Ecosystem Diversity?

A

Refers to the range of different habitats, from a small local habitat to the whole of the Earth.

29
Q

Measuring The Index Of Diversity?

A

d = N(N - 1) / (total) €n(n - 1)

Where:
d - index of biodiversity,
N - total number of organisms of all species,
n - total number of organisms of each species,
€ - sum of.

The higher the number, the more diverse the area is. If all the individuals are the same species, the index is 1.

30
Q

Impact Of Agriculture on Biodiversity?

A

Farmers often select the species and quantities of species they desire to be in their agricultural ecosystems,

Biodiversity is therefore reduced due to the reduction of alleles from the chosen species,

Also, to be economic, the number of individuals of species they have needs to be large,

If most of the area is taken up by the desirable individuals, the rest of the land is competed for by other species. Many will not survive this competition,

Pesticides are also used to exclude the species because they compete for the light, mineral ions and food required by the farmed species,

Trees are cut down for farmland. This destroys habitats and species loose shelter and food sources. This means that species will die or be forced to migrate,

Pesticides are also used. They kill plants and reduce plant biodiversity which reduces the number of species who feed on those types of plants,

Monoculture is when farmers have fields containing only one type of plant. This reduces biodiversity and less organisms will be able to survive because of less support,

The index of species in diversity is therefore low in agricultural ecosystems.

31
Q

Processes Which Have Removed Habitats?

A

Direct Effect Examples:

  • Removal of hedgrows and grubbing out woodland,
  • Creating monocultures, for example, replacing natural meadows with cereal crops or grass for silage,
  • Filling in ponds and draining marsh and other wetland,
  • Over-grazing of land, for example, upland areas by sheep, thereby preventing regeneration of woodland,

Indirect Effect Examples:

  • Use of pesticides and inorganic fertilisers,
  • Escape pf effluent from silage and slurry tanks into water courses,
  • Absence of crop rotation and lack of intercropping or undersowing.
32
Q

Conservation Techniques?

A

(Picked a few to put on flahscard)
Examples:
- Plant hedges rather than direct fences as field boundaries,
- Leaves wet corners of fields rather than draining them,
- Use organic, rather than inorganic, fertilisers,
- Use crop-rotation that includes nitrogen-fixing crop, rather then fertilisers, to improve soil fertility,
- Create natural meadows and use hay instead of grasses for silage,
- Provide legal protection for endangered species,
- Creating protected areas such as SSSI’s (sites of scientific interest as AONB’s (areas of outstanding natural beauty). These restrict further development,
- The environmental stewardship scheme which encourages farmers to conserve biodiversity (by replanting hedgerows and leaving margins around fields for wild flowers).

These practises will make food slightly more expensive to produce, and therefore to encourage farmers there are a number of financial incentives from the Department For Environment, Food and Rural Affairs and the EU. Biodiversity is very important and if it reduces, the global living system becomes very unstable and we rely on the system for food and resources.

33
Q

What Determines The Features Of A Species?

A

DNA determines the proteins,

Enzymes and proteins determine the features of an organism,

Comparing the genetic diversity of a species allows scientists to discover evolutionary relationships between them.

34
Q

Comparison Of Observable Characteristics?

A

Traditionally, genetic diversity was measured by observing the characteristics of organisms; this method is based on the fact that any observable characteristic is determined by a gene/genes (with environmental influences). The variety within a characteristic depends on the number and variety of alleles of that gene,

Using observable characteristics has its limitations because a large number of them are coded for by more than one gene. This means they vary continuously and it is often difficult to distinguish them. Differences may also be sue to environmental factors, e.g. height in humans is determined by more than one gene but environmental factors can influence this,

For these reasons, inferring DNA differences from observable characteristics has been replaced by directly observing DNA sequence.

35
Q

Comparison Of DNA Base Sequences?

A

With the advent of gene technology, we can now read base sequences of any organism,

We can determine the exact order of nucleotides on DNA,

Gene technology is completed with advanced computers which tag each nucleotide with a different fluorescent colour. These coloured bands allow us to measure the genetic diversity of a species by sampling the DNA of its members and sequencing it it produce a pattern which we then analyse.

36
Q

Fluorescent Colours And Their Corresponding Nucleotide?

A

Adenine - Green,
Thymine - Red,
Cytosine - Blue,
Guanine - Yellow.

37
Q

Analysis Of Coloured Bands?

A

Analysis of the coloured patterns allows us to compare one species with another or one individual with another of the same species to determine how diverse they are,

The patterns are scanned with lasers (because this process would be slow with human eye) and interpreted by computer software to give DNA nucleotide base sequence,

We use these techniques to determine the evolutionary relationships between species,

When one species gives rise to another species, the DNA sequence will be very similar to that of the original species. Due to mutations, the DNA sequence of the new species will have changed. Over time, the new species will accumulate more and more differences in the DNA sequence.

38
Q

Comparison Of The Base Sequence Of mRNA?

A

mRNA is coded for by DNA,

The base sequences on mRNA are complementary to those of DNA,

It follows that we can measure DNA diversity, and therefore genetic diversity, by comparing the base sequence of mRNA.

39
Q

Comparison Of Amino Acid Sequences In Proteins?

A

The sequence of amino acids and proteins is coded for by mRNA,

Genetic diversity within, and between, species can therefore be measured by comparing the amino acid sequences of their proteins,

The degree of similarity in the amino acid sequence of the same protein in two species can reflect how closely related the species are. These two amino acid sequences can be compared by counting the number of differences ir similarities in each sequence.

40
Q

What is variation?

A

Variation is the differences that exists between individuals. There’s variation between species and within species.

Variation can be caused by genetic factors.

Different species have different genes, which causes variation between species. Species have different alleles, which causes variation within a species.

Variation within a species can be caused by environmental differences.

Most variation is caused by genetic and environmental factors combining.

41
Q

How to study variation?

A

You look at a sample of the population, not the whole population. This would be too time consuming or impossible to catch all individuals.

The sample must be random.

42
Q

Interspecific Variation?

A

When one species varies from another.

43
Q

Intraspecific Variation?

A

When an organism in a specie varies from another organism in the SAME species.

44
Q

Why Are Samples Taken?

A

Because scientists cannot possibly measure every single living organism.

45
Q

Random Sampling?

A

Involves taking measurements of individuals, selected (in no order) from the population of organisms which is being investigated,

If these individuals are representative of the population as a whole, then the measurements can be relied upon.

The sample must accurately represent the whole population.

  1. Make sure the sample is not biased. If you are looking at plants, pick random sites by dividing the field into a grid and use a random number generator to select coordinates.
  2. To ensure any variation observed in the sample isn’t just due to chance, it’s important to analyse the results statistically. This allows more confidence that the results are true and reflect the whole population.
46
Q

Reasons Why Sampling Might Not Be Reliable?

A

Sampling Bias - The selection process may be biased. The investigators may be making unrepresentative choices, either deliberately or unconsciously. When measuring buttercups, are they as likely to take samples from a muddy are than as a dry one? Will they avoid areas covered in cow poo or nettles?,

Chance - Even if sampling bias is avoided, the individuals chosen may, by pure chance, not be representative. The 50 buttercup plants selected might have just happened to be the 50 tallest in the population.

47
Q

How To Prevent Sampling Bias?

A

Eliminate, as far as possible, any human involvement in choosing the samples,

This can be achieved by carrying out random sampling.

48
Q

Method Of Random Sampling?

A
  1. Divide the study area into a grid of numbered lines, e.g. by stretching two long tape measures at right angles to each other,
  2. Using random numbers, from a table or generated b a computer, to obtain a series of coordinates,
  3. Take samples at the intersection of each pair of coordinates.
49
Q

How To Prevent Chance?

A

We cannot completely prevent chance but we can do things to minimise it:

Use a large sample size - the more individuals that are selected, the smaller the probability that chance will influence the result and the less influence anomalies have. The greater the sample size, the more reliable the data,

Analysis Of The Data Collected - accepting that chance will play a part, the data collected can be analysed using statistical tests to determine the extent to which chance may have influenced the data. These tests allow us to decide whether any variation observed is the result of chance or is more likely to have some other cause.

50
Q

Normal Distribution Curve?

A

Bell-shape curve,

Shows continuous variation, e.g. height in humans. Some people are really tall and some people are really small but the majority are somewhere in the middle.

51
Q

Skewed Distribution?

A

When the normal distribution curve is shifted slightly to one side.

52
Q

Finding The Mean On A Graph?

A

Measurement of the maximum height on the curve.

52
Q

Standard Deviation On A Graph?

A

Measurement from the mean to the point of inflection (when the curve turns from being convex to concave),

Gives an indication of the range of values either side of the mean.

If something is written as 9+3 (the + has a - below it)). This means the mean is 9 and the standard deviation is 3. This can also mean that most the values are spread between (9+3) 12 and (9-3) 6.

A large standard deviation means that the values in the sample vary a lot. A small standard deviation tells you that most of the sample data is around the mean value, so varies a little.

54
Q

Formula For Chi-Squared?

A

X2 = { (O-E)2 / E

O = observed result. 
E = expected result.
2 = squared sign.
{ = sum off. 

X2 = chi-squared.

Do practice exam questions for this.

55
Q

Standard deviation?

A
  • Work out the mean,
  • Then for each number: subtract the mean and square the result,
  • Then work out the mean of those squared differences,
  • Take the square root of that and we are done!
56
Q

How were allele frequency’s first assessed?

A

Early estimates of genetic diversity were made by looking at the frequency of measurable or observable characteristics in a population (e.g. number of different eye colours and number of people with that eye colour).

Since different alleles determine different characteristics, a wide variety of each characteristic in a population indicates a high number of different alleles - and so a high genetic diversity.

However gene technologies have now been developed that allow us to measure genetic diversity directly.

57
Q

How to clarify revolutionary relationships?

A

We use new technologies to find new relationships of organisms or clarify the original ones. This can lead to classification systems being updated.

These technologies are useful for clarifying evolutionary relationships:

  1. Genome sequencing,
  2. Comparing amino acid sequences,
  3. Immunological comparisons.
58
Q

Genome sequencing?

A

A technology.

Advances in genome sequencing have meant that the entire base sequence of an organism’s DNA can be determined.

The DNA base sequence of one organism can then be compared to the base sequence of another to see how closely related they are.

Closely related species have a higher percentage of similarity in their DNA base order, e.g. humans and chimps have a 94% similar base sequence.

Genome sequencing has clarified the relationship between skunks and mustelidae family (e.g. badgers). Skunks were reclassified into the mephitidae family.

59
Q

Comparing amino acid sequences?

A

A technology.

Proteins are made of amino acids. The sequence of amino acids is coded for by the base sequence of DNA.

Related organisms have similar DNA sequences and DNA so similar amino acid sequences.

60
Q

Immunological comparisons?

A

A technology.

Similar proteins will also bind the same antibodies.

E.g. if antibodies to a human version of a protein are added to isolated samples from some other species, any protein that’s like the human version will also be recognised (bound) by that antibodie.

61
Q

How to draw error bars using standard deviation?

A

Standard deviations can be plotted on a graph or chart of mean values using error bars. Look page 107.

Error bars extend one standard deviation below the mean (so the total length of an error baee is twice the SD).

The longer the bar, the larger the SD and the more spread out the sample data is from the mean.

62
Q

Habitat?

A

The place where the organisms live.

63
Q

Community?

A

All the populations of different species in a habitat.

64
Q

How can biodiversity be considered on a global and local level?

A

Local biodiversity - consider the variety of different species living in a small habitats (pond, back garden).

Global - considering the variety of species on earth. 8.7 million species on earth is the current estimate. Biodiversity is greatest in the equator and lowest in the poles.

65
Q

Give two ways in which antibiotics stop bacteria growing?

A

Antibiotics stop the production of DNA in the bacteria. This stops the bacteria from being able to multiply.

Antibiotics also break down the wall of the bacteria which disables the bacteria from working.