Biochemistry Flashcards

1
Q

What is meant by the term bioenergetics? (2)

A

Transformation and flow of energy within biological systems, and their environment.
Concerned with the initial and final energy states of reactants, not the mechanism or kinetics

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2
Q

What is the significance of “bioenergetics” to us?

2 possible answers

A

1) Study of how such energy flows, transforms and harnessed.

2) Processes by which the body meets energy demands e.g. digestion & other metabolism.

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3
Q

What is thermodynamics?

A

laws & principles describing the flow and interchanges of heat, energy, & matter in systems

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4
Q

List and explain 3 types of systems.

A

1)Isolated - cannot exchange matter or energy with its
surroundings
2) Closed - may exchange energy, but not matter, with the surroundings
3) Open - may exchange matter, energy, or both with the surroundings

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5
Q

What kind of system would you classify the human body as? Justify your choice

A

The human body is an open system
• exchange of matter (air, food in & waste out)
• exchange of heat (e.g. via homeostasis)

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6
Q

What is the 1st law of thermodynamics? (3)

A

the total energy of a system (including surroundings) remains constant
• energy cannot be gained or lost
• it can be transferred from part to part
• It can be converted from one form to another

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7
Q

What is the 2nd law of thermodynamics?

A

total entropy of a system must increase for a process to occur spontaneously.

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8
Q

What determines how energy flows and whether reactions occur?

A

Gibbs free energy (G)

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9
Q

What is Gibbs free energy?

A

• energy available to reactants/products in rxn
• determines the feasibility of reactions i.e. direction &
extent

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10
Q

Two forms of G used in chemical reactions

A

ΔG, the change in G of rxn
ΔG°, the standard ΔG (reactants/products @ 1mol/L)
 ΔG° useful only under standard conditions

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11
Q

ΔG is determined by two factors. what are them?

A

Enthalpy (ΔH) – change in heat of reactants and
products of a rxn (e.g. chemical bonds)
• Entropy (ΔS) – change in randomness/disorder of
reactants & products

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12
Q

ΔG can also be defined for ideal gas reactions. what is the formula?

A
ΔG = ΔG° + RT ln [B]/[A]
At constant P (pressure) & T (absolute) – thermal equilibrium
R = gas constant (8.315 J/mol/K)
In = natural logarithm
[B] = concentration of product
[A] = concentration of reactant
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13
Q

What happens to Gibbs free energy under standard conditions?

A

ΔG = ΔG°
ΔG° is predictive only under standard conditions
ΔG & ΔG° can differ greatly depending on [A], [B]

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14
Q

What is the formula for standard gibbs free energy at equilibrium?

A

At equilibrium ΔG = 0
0 = ΔG° + RT lnKeq
ΔG° = – RT lnKeq

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15
Q

how does a reaction become feasible?

A

As long as the sum of ΔG is –ve the pathway is

feasible.

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16
Q

How can a rxn be feasible even if the sum of the gibbs free energy is positive?

A

Enzymes They reduce the activation energy needed for a rxn

17
Q

What is an exergonic and endergonic reaction?

A

An exergonic reaction is a chemical reaction where the change in the free energy is negative and The change of Gibbs free energy (ΔG) during an endergonic reaction is a positive value because energy is gained .

18
Q

How do Biological systems overcome these +ve ΔG’s?

A

Exergonic reactions are usually coupled with

endergonic ones using an energy coupler.

19
Q

What is the ATP coupler known as?

A

The universal coupler.

20
Q

What does the ATP coupler do?

A

Allows it to accept and donate energy in many rxns

21
Q

What do high energy terminal phosphate bonds do?

A

release a large amount of energy on

hydrolysis/breaking

22
Q

What does phosphate bonds allow?

A

ATP to release energy for some processes when
hydrolysed to ADP + Pi
• ADP to store energy from other processes as
chemical potential energy in the form of ATP

23
Q

why is the kinetic stability of ATP hydrolysis a good thing?

A

-Rapid hydrolysis (due to low barriers) would
hinder ATP’s role in metabolism
-enzymes lower these barriers, coupling the
rxn with other useful ones
-prevents free energy released from ATP
hydrolysis being wasted

24
Q

The transfer of e- can be measured as

A

reduction potential (E)

25
Q

What are some Substances obtained from food that are used by the body?

A

carbohydrates; fats and oils; proteins; vitamins; minerals.