Biochemistry Flashcards
what is width of plasma membrane
7-10 nm wide
what is the chemical composition of plasma membrane
43% lipids
49 % proteins
8 % carbohydrates
what are the types of lipids in cell membrane
Phospholipids (Lecithin & Cephalin)
Glycosphingolipids (Cerebrosides & Gangliosides)
Cholesterol
what is significance of lecithin in cell membrane
Lecithin is composed of units of choline, phosphoric acid, fatty acids and glycerol. … Without lecithin, the cell membranes would become less fluid, thus less permeable.
what is the significance of cephalin in cell membrane
Cephalin plays a role in membrane fusion. Fusion is the process by which two initially distinct lipid bilayers merge their hydrophobic cores, resulting in one interconnected structure.
what is the function of ganliosides in cell membrane
Gangliosides is a component of the plasma membrane that modulates cell signal transduction events.
The functions of gangliosides as specific determinants suggest its important role in the growth and differentiation of tissues as well a
s in carcinogenesis.
what is the significance of cholesterol in cell membrane
Cholesterol provides stability to the plasma membrane by limiting the movement of the phospholipids.
cholesterol in the cell membrane is to maintain stability, anchor other molecules.
Cholesterol acts as a bidirectional regulator of membrane fluidity because at high temperatures, it stabilizes the membrane and raises its melting point, whereas at low temperatures it intercalates between the phospholipids and prevents them from clustering together and stiffening.
write a short note on the fatty acids in cell membrane
They are also major component of cell membrane. 50% of fatty acid groups are saturated. The other half contains unsaturated and polyunsaturated fatty acids.
Oleic acid is the most abundant unsaturated fatty acids in animal membranes.
The degree of unsaturation determines the fluidity of the membranes.
which types of proteins form the cell membrane
Integral or intrinsic proteins
Peripheral or extrinsic proteins
Trans-membrane proteins
(span the whole width )
what is integral membrane protein and write about its signifiance
An integral membrane protein (IMP) is a type of membrane protein that is permanently attached to the biological membrane.
IMPs include transporters, linkers, channels, receptors, enzymes, structural membrane-anchoring domains, proteins involved in accumulation and transduction of energy, and proteins responsible for cell adhesion. Common examples are Insulin receptors, Glycophorin, Rhodopsins. Band-3 proteins etc
what is peripheral membrane protein and its significance in cell membrane
Peripheral membrane proteins are membrane proteins that adhere only temporarily to the biological membrane with which they are associated.
Peripheral enzymes participate in metabolism of different membrane components, such as lipids (phospholipases and cholesterol oxidases).
what is transmembrane protein and write about its significance
A trans membrane protein (TP) is a type of integral membrane protein that spans entirely the cell membrane to which it is permanently attached. Many trans membrane proteins function as gateways to permit the transport of specific substances across the membrane.
what are the major functions of membrane proteins
Transport Enzymatic activity Signal transduction Cell-cell recognition Intercellular joining Attachment to the cytoskeleton and extracellular matrix (ECM)
which carbohydrates are present in cell membrane
Glycoproteins
Glycolipids
what is glycosylation
The carbohydrate is attached to the protein in a posttranslational modification. This process is known as glycosylation.
what is the significance og glycoprotein and give a detailed example
Glycoproteins are also often important integral membrane proteins, where they play a role in cell–cell interactions. One example of glycoproteins found in the body is mucins, which are secreted in the mucus of the respiratory and digestive tracts. The sugars when attached to mucins give them considerable water-holding capacity and also make them resistant to proteolysis by digestive enzymes.
what are glycolipids and write about their significance
Glycolipids are lipids with a carbohydrate attached by a glyosidic (covalent) bond. Their role is to maintain the stability of the cell membrane and to facilitate cellular recognition, which is crucial to the immune response and in the connections that allow cells to connect to one another to form tissues. They include glyceroglycolipids and glycosphingolipids.
what is glycocalyx and write about its significance
The glycocalyx, is a glycoprotein and glycolipid covering that surrounds the cell membranes. This viscous coating consists of several carbohydrate moieties of membrane glycolipids and glycoproteins, which serve as backbone molecules for support. Generally, the carbohydrate portion of the glycolipids found on the surface of plasma membranes helps these molecules contribute to cell–cell recognition, communication, and intercellular adhesion.
how are caveolae formed
The caveolae are formed by the curving inward of the inner leaflet of the plasma membrane an integral protein named caveolin forces the formation of caveolae which are involved in the membrane transport and rigidity
how are rafts formed and write about their structure
The rafts are made by the clustering of sphingolipid with cholesterol in the outer monolayer of the plasma membrane. The rafts appear to have receptors and signaling proteins.
write about the clinical significance of cell membrane
ALZHEIMER’S DISEASE: Oxidative stress in brain results in alterations in phospholipids that comprise the cell membrane and disrupts the functions of effected brain cells.
CYSTIC FIBROSIS: Defect in calcium ion channels for the unclear reasons in excess production of fluid in lungs
what are ion channels and describe their types
Ion channels are transmembrane channels, pore like structures composed of proteins”.
All channels have gates & are controlled by opening
and closing.
TYPES:
Ligand gated channels:
In this a specific molecule binds to a receptor and opens the channel.
Voltage gated channels:
These channels open or close in response to changes in membrane potential.
write a short note on simple or passive diffusion
It depends on concentration gradient of a particular substance across the membrane
The solute passes from higher concentration to lower concentration till equilibrium is reached
The process neither requires any carrier protein nor energy
write a short note on facilitated diffuision
It is similar to passive diffusion in that the solutes move along the concentration gradient.
But it differs from passive diffusion in that it requires a carrier protein or transport protein.
Energy is not required.
write a short note on active transport
It occurs against a concentration gradient
Energy is required
40% of the total energy requirement in a cell is utilized for active transport system
Carrier or transport proteins are needed
write a short note on uniport
This system involves the movement of certain substance across the plasma membrane singly and independently of any other substance
The transporter involved is called uniporter
write a short note on symport
This system involves the movement of two substances across the membrane together & in the same direction
The transporter involved is called symporter
write a short note on antiport an give an example
Also called counter transport
This system involves the movement of two different substances simultaneously, but in two different directions
Example: Efflux of 3 Na + ions to cell exterior & a simultaneous influx of 2 K+ ions
what are the mechanisms for transport of macromolecules
The mechanism of transport of macromolecules such as proteins, hormones, immunoglobulins, LDL, and even viruses takes place across the membrane by two independent mechanisms Exocytosis Endocytosis Phagocytosis = “cellular eating” Pinocytosis = “cellular drinking
what is exocytosis
In exocytosis, transport vesicles migrate to the membrane, fuse with it, and release their contents. Many secretory cells use exocytosis to export their products.
what is endocytosis
In endocytosis, the cell takes in macromolecules by forming vesicles from the plasma membrane. Endocytosis is a reversal of exocytosis, involving different proteins
describe the types of endocytosis
Phagocytosis (cellular eating): Cell engulfs particle in a vacuole
Pinocytosis (cellular drinking): Cell creates vesicle around fluid
Receptor-mediated endocytosis: Binding of ligands to receptors triggers vesicle formation
describe the activity of sodium potassium pump and its significance
Transports sodium from inside to outside the cell and at the same time pumps K+ from outside to inside the cell.
Maintain sodium and potassium concentrations
Establishing a negative electrical voltage inside the cells
Complex of two separate globular proteins
subunit, with a molecular weight of about 100,000.
β subunit, with a molecular weight of about 55,000.
It has three receptor sites for binding sodium ions on the portion of the protein that protrudes to the inside of the cell.
It has two receptor sites for potassium ions on the outside.
The inside portion of this protein near the sodium binding sites has ATPase activity
write about the primary active transport of calcium
Calcium is actively transported from inside to outside the cell by calcium pump.
Energy is obtained from ATP by the catalytic activity of ATPase.
Present in the sarcoplasmic reticulum of muscle cells and the mitochondria of all the cells.
write about the primary active transport of hydrogen ions
In the gastric glands of the stomach
Involved in the formation of hydrochloric acid
In the late distal tubules and cortical collecting ducts of the kidneys
Hydrogen ions are secreted from the blood into the urine
what is the biochemical importance of carbohydrates
Glucose is major metabolic fuel for mammals & is precursor for synthesis of all other carbohydrates in the body
Glycogen for storage
Ribose & deoxyribose in nucleic acids
Galactose in the lactose of milk (milk sugar)
Carbohydrates occurs in cell membranes as glycoproteins & glycolipids
Present in lipoproteins
Diseases related to CHO metabolism include galactosemia, lactose intolerance, glycogen storage diseases, diabetes mellitus
what are carbohydrates
Poly hydroxy aldehydes
or
Poly hydroxy ketones
describe classification of carbohydrates
Monosaccharides Disaccharides Oligosaccharides Polysaccharides Derived carbohydrates
write a short note on monosaccharides
Monosaccharides are simple sugars
Can not be further hydrolyzed
A carbonyl group (aldehyde or ketone) & several hydroxyl groups
Eg. Glucose, fructose, galactose
General formula (CH2O)n ( n= 3 or some larger number
write a short note on disaccharides
Those sugars which yield two molecules of the same or different monosaccharides on hydrolysis
The two monosaccharides are linked by a glycosidic bond
Eg. lactose, sucrose, maltose, isomaltose, trehalose
General formula Cn(H2O)n-1
what are glucose dimers
Maltose α 1-4 linkage…..isomaltose α 1-6 linkage…..trehalose α 1-1 linkage…..all are glucose dimers
write a short note on oligosaccharides
Those sugars which yield 3 to 10 monosaccharides on hydrolysis
Monosaccharides are joined to each other covalently through O- glycosidic bonds or linkages
E.g α dextrins ( polymer of eight glucose molecules)
write a short note on polysaccharides
Those sugars which yield more than 10 molecules of monosaccharides on hydrolysis General formula (C6H10O5)n Further divided into Homopolysaccharides (homoglycans) Heteropolysaccharides (heteroglycans)
what are homopolysaccharides
Polymer of same monosaccharide units
Eg . Starch, glycogen, dextrin, dextran, cellulose
what are heteropolysaccharides
Polymer of different monosaccharide units
Eg. Mucopolysaccharides ( GAGs)
Glycoconjugates, Mucilages
write a short note on complex/derived carbohydrates and their examples
Derived from carbohydrates by various reactions
Eg. Oxidation products, reduction products, amino sugars, deoxy sugar
Oxidation… gluconic acid glucaric acid ascorbic acid……. Reduction… polyhydroxy alcohols-glycerol….. Amino sugar ….glucosamine….. Deoxysugar… deoxyribose
monosaccharides can be classified into
aldoses
ketoses
aldoses can be classified into ——– according to number of carbon atoms
triose (3 C atoms) (glyceraldehyde) tetrose (4 C atoms) (erythrose) pentose (5 C atoms) (ribose) hexose (6 C atoms) (glucose, galactose, mannose) heptose (glucoheptose)
ketoses can be classified into ——— according to number of carbon atoms
tritulose (dihydroxy acetone) tetrulose (4 C atoms) (erthrulose pentulose (5 C atoms) (ribulose) hexulose (6 C atoms) (fructose) heptulose (sedoheptulose)
what are disaccharides and give some examples
A disaccharide consists of two monosaccharides.
Glucose + Glucose Maltose + H2O
Glucose + Galactose Lactose + H2o Glucose + Fructose Sucrose + H2o
what is fisher projection
straight chain representation
3D structure of stereoisomers can easily be drawn and represented in 2D
what is harworth projection
simple ring in perspective
what are conformational representation
chair and boat configuration
what are hemiacetal and hemiketal
aldehyde and alcohol from hemiacetal
ketone and alcohol form hemiketal
write a short note on D-glucose
Found in fruits, corn syrup, and honey.
An aldohexose with the formula C6H12O6.
Known as blood sugar in the body.
The monosaccharide in polymers of starch, cellulose, and glycogen.
write a short note D-fructose
Is a ketohexose C6H12O6.
Is the sweetest carbohydrate.
Is found in fruit juices and honey.
Converts into glucose in the body.
write a short note on D - galactose
An aldohexose C6H12O6 Not found free in nature. Obtained from lactose, a disaccharide A similar structure to glucose except for the –OH on C4.
how are glyosidic bonds formed
Glycosidic bonds are formed by the enzymes glycosyl transferases that use nucleotide sugars as substrate
write a short note on maltose
Maltose, a cleavage product of starch (e.g., amylose), is a disaccharide with an a(1® 4) glycosidic link between C1 - C4 OH of 2 glucoses.
It is the a anomer (C1 O points down).
write a short note on sucrose
common table sugar, has a glycosidic bond linking the anomeric hydroxyl of glucose & fructose, the linkage is α (12)
write a short note on lactose
milk sugar, is composed of galactose & glucose, with β (14) linkage from the anomeric OH of galactose
what is inversion phenomenon
In free form fructose occurs in pyranose form which is strong levorotatory
Rotation is reversed & process is called inversion phenomenon
Product of sucrose hydrolysis ( fructose) is called invert sugar
write a short note on reducing and non-reducing sugars
Sugars having atleast one free aldehyde or keto group in their structure are Reducing sugars
Those which do not have any free active group (aldehyde or keto) are known as Non-reducing Sugars
All monosaccharides & disaccharides are reducing except sucrose
A non-reducing sugar can be hydrolyzed using dilute hydrochloric acid. After hydrolysis and neutralization of the acid, the product may be a reducing sugar
what are structural and storage polysaccharides
Storage polysaccharides contain only α-glucose units. Important ones are starch & glycogen
Structural polysaccharides contain only -glucose units. Important ones are cellulose and chitin. Chitin contains a modified -glucose unit
write a short note on starch
Starch is a storage compound in plants, and made of αD-glucose units
It is a homo-polymer of glucose made up of two components: amylose and amylopectin.
Starch is 15-20% amylose and 80-85% amylopectin
It is also non-reducing (because no potential aldehyde group
describe amylose
Amylose – a straight chain structure formed by α 1→4 glycosidic bonds between α-D-glucose molecules.
The amylose chain forms a helix or coiled structure
describe amylopectin structure
Amylopectin-a glucose polymer with mainly α -(14) linkages, but it also has branches formed by α -(16) linkages
what is the action of enzymes on starch
Salivary & pancreatic amylases (α-amylases) hydrolyze starch into
Maltose
Maltotriose
α- dextrins
write a short note on starch
Structural polysaccharide
It is an unbranched polymer of -D-glucose mainly present in plant kingdom
Consists of large number of glucose residues joined to each other through (1→4) linkages
Cellulose is made up of repeating disaccharide units called cellubiose
Cellubiose has same structure as maltose, but unlike maltose it has (1→4) glycosidic linkage
write about significance of cellulose
Cellulose is important in our diet because it
Provides fiber & bulk to the food
Serves to satisfy appetite
& Assists with digestive movements in the small and large intestine
Humans can not digest cellulose because they lack the enzyme cellulase to hydrolyze the (1→4) glycosidic bond
write a short note on glycogen
Homo-polymer of α D-glucose
Storage polysaccharide also known as animal starch
Present in liver & muscles
Resembles amylopectin but it is more compact
A glucose polymer with mainly α -(14) linkages, but also has branches formed by α -(16) linkages
Glycogenesis
Glycogenolysis
what are dextrins
Intermediate products in the hydrolysis of starch by acids or enzyme amylase
Each dextrin molecule consists of 8 α D-glucose residues showing mostly α -(14) linkages in addition to α -(16) linkage at each of branching site
Sweet in taste
what are dextrans
Dextrans homo-polymer of α D-glucose residues
Showing mostly α -(16) linkages in addition to (12), (13) & (14) linkages
Used in medicine as plasma substitute or plasma extender in the treatment of hypovolemic shock
what are lipids
Heterogeneous group of organic compounds”
Soluble in organic solvents but in soluble in water
what is the biomedical importance of lipids
High energy dietary constituent Lipoprotein (lipid transporter) Structural components (plasma membrane) Protective covering to internal organs Production of hormones Fat soluble vitamins
lipids are classified into
simple lipids
compound lipids
derived lipids
simple lipids are derived into
fats
waxes
simple fats are
neutral fats/ triglycerides
esters of fatty acids with glycerol
what are waxes and their types
Esters of fatty acids with long chain alcohols 1. True Waxes Bees Wax, Lanolin, Spermaceti 2. Others Waxes Cholesterol Esters, Vitamins A & D Lipase can not hydrolyze waxes
compound lipids include
phospholipids sulfolipids gangliosides glycolipids lipopolysaccharides lipoproteins
phospholipids include
glycerophospholipids
(lecithin, cephalin, plasmalogens)
sphingophospholipids
(sphingomyelins)
derived lipids include
diglyceride fatty acids alcohols cholesterol fat soluble vitamins
what are fatty acids and their characteristics
“Aliphatic Mono-carboxylic Acids”
Double bonds are always spaced at 3-Carbon intervals from each other
Numbered from carboxyl end CH3-R-COOH Even number of carbon atoms Unbranched Saturated or unsaturated Cis or Trans
what are the properties of enzymes
Protein catalysts ( except Ribozymes)
Increases the velocity of chemical reactions
Not consumed during reactions they catalyze
what are catalysts
Speeds up chemical reactions in living organisms by decreasing the energy needed to start the reaction (activation energy)
describe the location of enzymes
Enzymes are localized in specific organelles within the cell
This isolation separates reaction substrates or products from other competing reactions
what are characteristic of enzymes
Enzymes are highly specific, interacting with one or few substrates & catalyzing only one type of chemical reaction
Enzyme catalyzed reactions are faster than un catalyzed reactions
Each enzyme molecule is capable of transforming 100-1000 substrate molecules into product each second.
what is turnover number
The number of molecules of substrate converted to product per enzyme molecule per second is called the turnover number