biochem/genetics first aid Flashcards
what trinucleotide repeat codes for FMR1 gene
CGG (fragile X syndrome) (CGG) Chin (protruding) Giant Gonads
Fragile X syndrome inheritance is ?
X linked dominant inheritance
in Fraile X syndrome. explain what a trinucleotide repeat dose?
CGG repeat in FMR1 gene –> HYPERmethylation –> decrease expression.
pt presents with post-pubertal macroorchidism (giant balls) long face w/ large jaw, large everted ears, autism predisposed to mitral vale porlapse
Fragile X syndrome
most common cause of INHERITED intellectual disability and autism?
Fragile X syndrome. its the 2nd most common cause of GENETICALLY associated mental deficiency (after DOWNS)
CAG repeat?
Huntingtons disease
Caudate has dec Ach and GABA
(CAG) huntingtons
Myotonic dystrophy trinucleotide repeat?
CTG
Cataracts, Toupee (early balding in men), Gonadal atrophy
Myotonic dystrophy
CGG trinucleotide repeat?
Fragile X syndrome
GAA trinucleotide repeat
Friedreich ataxia
Ataxic GAAit
friedreich ataxia
6yo w/ persistent facial ulcer for past 2 months. extreme sensitivity to sunlight and has developed freckle on sun exposed areas since infancy. PE; skin is dry and rough and erythematous macules. there is an ulcerated plaque on face. biopsy (Squamous cell carcinoma) hes diagnosed w/ xeroderma pigmentosum. what enzyme is most likely causing this condition?
Endonuclease
what disease has a deficiency in endonucleases which prevents repair of pyrimidine dimers that are formed as a result of UV light exposure? and what type of DNA repair is this described above
xeroderma pigmentosum.
Nucleotide excision repair.
what phase of the cell cycle dose nucleotide excision repair occur?
G1 phase
A 4-year-old male presents to his pediatrician for a routine physical examination. Physical examination reveals the presence of hyperpigmented lesions that vary in color from light brown to dark brown, axillary freckling, and Lisch nodules. The most likely gene involved is A. HFE B. NF1 a tumor suppressor gene C. Nf1 oncogene D NF2 tumor suppressor E. NF2 oncogene
B. NF1 gene located on chromosome 17 is a tumor-suppressor. Inactivation results in Neurofibromatosis type-1. NF2 is also TS
HFE gene are located chromosome 6 results in ______________. autosomal recessive. leads to iron deposits in liver ,pancreas, heat, skin. iron overload due to accelerated rate of iron absorption in intestine.
hemochromatosis
A 23-year-old female presents with a sore throat and a scaling rash around her mouth. Physical examination reveals hyperemia of pharyngeal mucous membranes, edema of mucous membranes, angular cheilitis, and an oily scaling nasolabial rash. The most appropriate initial pharmacological treatment is?
A. Cobalamin
B. Niacin
C.. pyridoxine
D. Riiboflavin
E. Thiamine.
Riboflavin
A deficiency in riboflavin can result in angular stomatitis, glossitis, and seborrheic dermatitis. A normocytic-normochromic anemia may also be appreciated on a complete blood count.
a pt diagnosed with anorexia nervosa or malabsorptive syndrome (celiac sprue) presents with
Sorethroat, hyperemia of pharyngeal mucous membranes, edema of mucous membranes, chelitis, stomatitis, ,glossitis, and seborreheic dermatitis.
what vit is def?
B2 (riboflavin)
what is the function of Rb tumor suppressor?
Rb, a tumor suppressor protein which holds DNA within G1 until it is ready for division.
Retinoblastoma protein is a tumor suppressor protein that prevents excessive cell growth. It holds the cell cycle during the G1 phase. The tumor, called retinoblastoma, forms when both alleles of the protein are inactivated by phosphorylation.
A 16-year-old male presents to his primary care physician for an annual check-up. Physical examination reveals milky white skin and white hair with blue and translucent irises. Which of the following enzymes is most likely deficient in this patient?
A. acetaldehyde dehydrogenase
B. tryptophan hydroxylase.
C. Tyrosinase
D. tyrosine kinase
Tyrosinase.
oculocutaneous albinism.
congenital albinism is often due to a deficiency in tyrosinase, the enzyme responsible for converting tyrosine to melanin. Hereditary forms can be autosomal dominant or recessive. Albinism can also result from altered neural crest cell migration. Patients present with a varying degree of skin and hair hypopigmentation, translucent irises, and ocular complications. They are also at increased risk for skin cancer.
A 6-month-old female with a skin rash is presented to her pediatrician. The child has also been experiencing bouts of diarrhea. The parents have also noted that the child’s skin typically reddens after exposure to sunlight. Upon physical examination, the pediatrician notes dry, scaly, well-marginated eruptions of the skin of the forehead, cheeks, and back of the hands. After laboratory testing, a deficiency in the absorption of an essential amino acid is suspected to be involved. The amino acid in question is most likely and what disease
A. glycine
B histidine
C. phenylalanine
D. Nicotiamide
E. Tryptophan
Tryptophan
(Hartnup disease)
defective GI absorption and renal reabsorption of the essential amino acid tryptophan, resulting in deficiency of vitamin B3.
A 3-year-old female presents with frequent paroxysms of inappropriate laughter and hyperactivity. Physical examination reveals maxillary hypoplasia, deep-set eyes, and a large mouth with tongue protrusion. The gait is jerky and puppet-like. Osteopathic Cranial Manipulative Medicine is initiated, which the mother associates with a subjective improvement of 50% in her daughter’s ability to sleep as well the hyperactive periods. The most likely genetic cause the patient’s underlying disorder is
A. maternal uniparental disomy of chromo 15
B. Maternally-derived microdeletion on chromo 15
partial deletion of short arm of chromo 5
paternally-derived microdeletion on chromo 15
maternally derived microdeletion on chromo 15
angelman syndrome.
A 28-year-old professional bodybuilder presents with alopecia, muscle pain, and an erythematous perioral macular rash. He is currently being treated for depression with sertraline. His diet consists of a massive amount of protein and raw eggs. These signs and symptoms are most consistent with a deficiency of
A. Biotin
B pyridoxine
C. Riboflavine
Biotin
A deficiency in biotin can occur in patients who consume a large amount of raw eggs due to the biotin binding enzyme avidin. Biotin deficiency can result in dermatitis, alopecia, enteritis, and depression.
An underweight, 35-year-old known alcoholic female presents to the neighborhood clinic with complaints of headaches, diarrhea, memory loss, and a rash. Physical examination shows erythematous dry plaques on her arms. She states that these plaques are worse when she is in the sunlight. Because of her history, a nutrient deficiency is suspected. It is most likely that this deficiency is
A. Foilic acid
B. iron
C. Niacin
D. Riboflavin
niacin
Niacin deficiency results in pellagra which clinically presents as the “4 Ds”. The 4 Ds are dermatitis, diarrhea, dementia, and death.
where is Rrna made?
Nucleolus.
Vit A functions are?
antioxidant.
consistuent of visual pigments (retinal) (think retinol is vitamin A, so think retin-A)
differentiation of epithelial cells into specialized tissues (pancreatic cells, mucus- secreting cells
vit A used to treat?
measles
(APL) acute promyelocytic leukemia.
Oral isotretinoin to treat severe cystic acne.
use all-trans retinoic acid to treat APL
def in VIT A
night blindness (nyctalopia)
dry scaling skin (xerosis cutis)
corneal degeneration (keratomalaxia)
Bitot spots on conjunctiva; immunosuppression
vit B1
in thiamine pyrophosphate (TPP) a cofactor for 4 dehydrogenase enzyme rxns. what are they?
“think ATP”
a-ketoglutarate dehydrogenase (dehydrogenase TCA cycle)
Transketolase (HMP shunt)
Pyruvate dehydrogenase. (links glycolysis to TCA cycle)
Branched-chain ketoacid dehydrogenase.
what vitamin is involved in Beri Beri
vit B1
Dry beri beri: polyneuritis, symmetrical muscle wasting.
wet beri beri: high output cardiac failure (dilated cardiomyopathy) edema, tachycardia.
a pt presents with polyneuritis, symmetrical muscle wasting. you make the diagnosis of dry beri beri what vit are they def in?
thiamine
Vit B2 riboflavin is a component of ____________ and _______
which are used in redox rxns.
example: succinate dehydrogenase rxn in the TCA cycle
flavins FADandFMN
(“ FAD and FMN are derived from riboFlavin)
(B2 = 2 atp)
the 2Cs of B2 deficiency are?
Cheilosis (inflammation of lips, scaling, and fissures at the corners of the mouth(
Corneal vascularization
a pt complains of burning feet (paresthesias)
on PE you see dermatitis, enteritis, alpecia, adrenal insufficiency
what vit are they deficient in and what component is it essential for
B5 pantothenic acid
essential component of coenzyme A
a pt develops facial flushing. this patients symptom is most likely do to Excess of _________ vitamin and the mechanism of this flushing is due to?
what can this patient take with this vitamin to prevents this rxn
vit B3 niacin excess causes facial flushing via (induced by prostaglandin, NOT histamine)
ASPIRIN
in glycolysis what is the rate limmint step? what is the enzyme
Fructose-6-P ——-(Phosphofructokinase-1)———> FRUCTOSE 1-6-bp
What are the 3 places where glycolysis is regulated?
- hexokinase / Glucokinase
glucose –> G6P
- PFK1
. F6P –> F-1-6-P
- Pyruvate kinase
PEP —> pyruvate
in glycolysis for the enzymes PFK1 and Pyruvate kinase. what inhibits or activates these enzymes?
PFK1:
activators: AMP, fructose-2.6-bisphophate
inhibitors: ATP, citrate
pyruvate kinase
active
fructose-1,6 biphsophate
inactivates
atp and alanine
Vitamin B5 is essential for what cofactor?
CoA (a cofactor for acyl transfers)
fatty acid synthase
vit B6 (Pyridoxine) is a cofactor used in? (main answer, since it has multiple)
Transamination (ALT, AST)
vit B7 (BIOTIN) is a cofactor for?
carboxylation enzymes (add a 2 carbon group)
pyruvate carboxylase: pyruvate (3C) –> oxaloacetate
what vitamin is used in a disease that you cant reduce Fe3+ to Fe2+
Vit C (ascorbic acid)
ancillary tx for methemoglobinemia
what vitamin is required for HEME synthesis?
Vit B6 pyridoxine
succinyl coa + glycine —> ALA
your pt has been on nitroprusside for tx of hypertensive emergencies for a 3 days. what are they are risk of developing?
how would you treat this devlopment
cyanide poisoining bc (nitroprusside contains 5 cyanide grps per molecule, toxic with prolonged infusions)
TX:NITRITES (amyl nitrite)
converts Fe2+ –> Fe3+ in Hgb (methemoglobin)
Fe3+ in HgB binds the cyanide, thus protecting the mtichondria. thus this allows them to start oxidative phosphorylation again until the cyanide is washed out of the system.
this prevents lactic acidosis
a pt is deficiency/defect in fructokinase whats the diagnosis
essential fructosuria
its benign! only abnormality will be fructose in urine.
if a patient has a deficiency in aldolase B what substance/substrate will be elevated?
fructose 1- phosphate
F-6-P accumulates causing a dec in available phosphate,–> dec ATP –> inhibition of glycogenolysis and gluconeogenesis
bc aldolase B enzyme catalyzes F-1-P into dihydroxyacetone-phosphate and glyceraldehyde.
diagnosis fructose intolerance.