Bio 173 final Flashcards

1
Q

Dependent variable

A

affected in response to the independent variable.
Ex. enzymatic activity of catalase

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2
Q

Independent variable

A

Manipulated/ Changed by researchers
not changing

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3
Q

positive controls

A

variable with known effect, expect a specific effect

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4
Q

negative control

A

no treatment, control/placebo, no effect

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5
Q

hypothesis

A

A testable statement that provides a possible explanation for a phenomenon. It is usually based on prior knowledge, observations, or theories.
Example: Catalase in potatoes requires Fe to function OR Fe is a cofactor for catalase.

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6
Q

prediction

A

A prediction is a specific forecast about the outcome of a study or experiment based on a hypothesis. It states what you expect to happen if the hypothesis is correct. An if-then statement, of what you expect to observe if your hypothesis is true. “If the level of sunlight increases, then the rate of photosynthesis will increase, resulting in more oxygen production.”

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7
Q

why are freezer stocks prepared

A

preserved the bacteria for longterm storage, used to make new probiotics during clinical trial

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8
Q

three steps of each cycle in PCR

A

denaturation, annealing, extension

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9
Q

PCR cocktail (master mix) component and functions of each

A

“Tiny primers need buffers too”

T - Taq Polymerase (heat-stable enzyme that extends DNA from the primers).
P - Pair for Primers (DNA or RNA to start DNA synthesis).
N - Nucleotides (building blocks of DNA).
B - Buffer (maintains pH for optimal enzyme activity).
T - Thermocycler (device to cycle temperatures and melt DNA)

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10
Q

positive control in PCR

A

shows your setup works

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11
Q

negative control in PCR

A

SHOULD have no result
if there is a result, contamination present - unwanted DNA in reagents or something is in your sample accidentally

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12
Q

scientific method

A

Question→Hypothesis→Experiment→Data→Conclusion

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13
Q

evolution and descent with modification

A

Change in genetic composition in a population over time (does not happen in an individual)

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14
Q

natural selection

A

Changes in genetic composition and gene frequencies in a population over time favor one that is more advantageous, species with the specific gene frequency are more likely to survive and reproduce - making it more prominent in the gene pool and population. Advantageous variations will eventually accumulate in the population, and the less favorable will diminish.

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15
Q

macroevolution

A

new life forms derived from older forms of life (birds from dinosaurs)

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16
Q

Law of succession

A

living organisms in a region will resemble fossils in the SAME region - fossils will appear in layered strata (rocks) with predictable sequence all around the world

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17
Q

anatomical homologs

A

structure that was evolutionarily derived from a single feature in an ancestor - an inherited PHYSICAL feature from an ancestor

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18
Q

molecular homology

A

similarities between species on a DNA/molecular level from an ancestor

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19
Q

convergent evolution

A

When organisms that are not closely related evolve similar behaviors or features, often as solutions to a common problem (similar body shapes, color patterns, behaviors)

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20
Q

microevolution

A

occurs over generations, short time scales

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21
Q

artificial selection

A

when humans take steps to amplify a “desirable trait” in animals and plants in future generations (like dog breeds, colors of flowers, scents of plants)

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22
Q

antibiotic resistance in bacteria

A

Antibiotic resistance occurs when bacteria mutate, survive antibiotics, and multiply, making treatments ineffective—a major threat to humanity.

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23
Q

vestigial structure

A

structures that have no apparent function and appear to be residual parts from a past ancestor (pelvic bone of a snake, our appendix and wisdom teeth)

24
Q

speciation

A

occurs when a group within a species separates from other members of its group (a physical barrier) and develops its own unique characteristics (genetic drift)

25
sexual dimorphism
different characteristics in males and females - cause attraction and more mating success when a male is more sexually dimorphic (different colors, size)
26
naming hierarchy of taxonomy
dear king Phillip came over for good soup Domain Kingdom Phylum Class Order Family Genus Species
27
taxonomy vs phylogeny
phylogeny is a hypothesis about evolutionary relationships (like an evolutionary tree), showing a pattern of descent not phenotypic similarities and taxonomy is classifying one organism
28
ancestral vs derived characteristics
Ancestral - originated in an ancestor Derived - developed in that organisms
29
What is cladistics? How do you identify a clade in a phylogenetic tree?
shared characteristics to place a species into a group by class, ancestral species has descendents
30
sister taxa
terminal clades that come from a common node that are considered closely related
31
outgroups
species from an evolutionary lineage that is closely related to but not part of the group being studied (all have wings but outgroup)
32
why is evolutionary science so controversial and misrepresented in the media
macroevolution implies that change over longterm time make people think that people came from monkeys (wrong) and that we are not the chosen ones and are not special
33
interspecific
BETWEEN different species
34
intraspecific
competition between the same species
35
interference
Direct interaction where individuals actively impede each others growth Ex. bacteria that produces antibiotics to kill off other types of bacteria
36
exploitation
Indirect interaction, one individual affects the other by consuming the same resources over time Ex. Plants taking up nutrients and space so that others cannot
37
What treatments test intraspecific vs. interspecific competition?
Intraspecific competition: Tested in monocultures (100% of species A or B). Interspecific competition: Tested in mixed cultures (all other treatments).
38
What are the null and alternative hypotheses?
Null hypothesis (H₀): Assumes no effect or difference; any observed results are due to chance. Alternative hypothesis (Hₐ): Assumes there is an effect or difference; results are not due to chance.
39
Why do we run our PCR product on a gel?
Verify the amplification, confirming that PCR generated the expected product size
40
How does the gel matrix separate different size DNA fragments?
Size based separation - longer DNA travels slower than shorter DNA
41
Why does DNA move down the gel?
Starts at the negative electrode, moves TOWARD the positive electrode (DNA is negatively charged from its phosphate backbone)
42
Interpret gel results using the DNA ladder and controls
Ladder - acts as a reference to estimate the size of PCR products Positive control - confirms that the PCR and gel works as expected, produces a band at target size Negative control - detects contamination, should not produce anything
43
BLAST
A national database search tool that fields a best match
44
What is a t-test?
Determines the significant difference in hypothesis testing
45
P<0.05
statistically significant (reject H0)
46
P>0.05
0.05 statistically insignificant (fail to reject H0)
47
Pearson's Correlation (r)
Strength between two variables, -1 to 1 where -1 is a perfect negative correlation and 1 is perfect positive correlation
48
How is fiber fermented by the gut microbiome?
Bacteria break down fiber into smaller fatty acids for energy and produce gaseous byproducts.
49
What are the end products of fiber fermentation in the gut?
Short-chain fatty acids (SCFAs) that provide energy.
50
What are the gaseous byproducts of fiber fermentation?
Hydrogen (H₂), methane (CH₄), and carbon dioxide (CO₂).
51
How do fermentation byproducts get absorbed into the bloodstream?
Gases like H₂, CH₄, and CO₂ are absorbed through the gut lining into the bloodstream
52
How do byproducts of fermentation in the gut reach the lungs?
They are transported via the bloodstream to the lungs, where they diffuse and are exhaled in breath.
53
Why do some people produce more methane gas in their breath?
They have a different gut microbiome composition with more methane-producing archaea/bacteria.
54
What factors influence the composition of the gut microbiome?
Diet, genetics, health conditions, and environment.
55
What type of microorganisms are responsible for methane production in the gut?
Methane-producing archaea or bacteria.
56
interference vs exploitative competition
Interference Competition: Direct interaction where organisms block others from accessing resources (e.g., lions chasing hyenas from a kill). Exploitative Competition: Indirect competition by depleting shared resources (e.g., plants competing for sunlight).
57
parts of DNA not needed in PCR that need to be removed
Excess primers, dNTPs, longer DNA fragments, the original template strand