Bacteriology Flashcards
What are Koch’s postulates?
A specific bacterium causes a specific disease so
- Bacterium must be present in every case of the disease
- Must be able to isolate the bacterium from the disease and grow it in pure culture
- Specific disease must be reproduced from pure culture in healthy susceptible host
- Bacterium must again be recovered
How big are bacteria and how big are mammalian cells?
About 0.5-3 x 0.5 micrometers
Anthrax is big, 8-10 micrometers
Human 10-100micrometers
What are nosocomial infections?
Hospital-borne
Who was Mary Mallon?
A carrier of typhoid
small percentage of salmonella typhi remained in her gallbladder, periodically shed in faeces
What is an endemic disease
A disease that occurs regularly at low or moderate frequency
e.g. dental caries
What is epidemic disease?
A sudden appearance of disease, or increase above the endemic level
e.g. diphtheria
What is pandemic disease?
Global epidemic
e.g. cholera
What are the modes of transmission?
Direct:
- Horizontal (sexual, respiratory tract via droplets, contamination from own flora, contact with skin and eyes)
- Vertical (transplacental, parturition)
Indirect:
- Inanimate objects (nosocomial, food intoxication or infection, water faecal-oral or air-con respiratory, animals, soil via spores)
Legionnaire’s
Legionella pneumophilia
Pneumonic disease
Contracted indirectly via water droplets in air con units
Name an obligate intracellular parasite bacterial infection
Chlamydia
How many genes do bacteria and mammals cause?
4500 genes, humans 22K gnees
What is the cytoskeleton like in bacteria and mammals?
Bacteria = rudimentary, ancient homologue of actin Mammals = extensive
How do bacteria move?
Rotating flagella
Extending/retracting pili
How do bacteria divide?
Binary fission
What are bacterial genomes like? What are mammalian?
Haploid usually single and circular + plasmids, bacteriophage
Mammalian: diploid, haploid gametes. Multiple (linear) + mitochondria
What are bacterial and mammalian mRNAs like?
Bacterial: polycistronic (co-linear), unstable
Mammalian: spliced introns out, 3’ polyA, 5’ cap, often stable, single genes
How do you regulate transcription in bacteria and mammalian cells?
Bacteria transcription initiation
Mammals often post-transcriptional
How do bacteria divide?
Binary fission:
Rods = divide on terminal axis –> get chains
Cocci = divide in all planes –> cluster
What shape are salmonella?
Rods
What shape are E coli?
Rods
What shape is vibrio cholera?
Curved rods
What shape is trepanoma?
Syphilis
Spiral
What shape is helicobacter?
Gastric ulcer
Spiral
Which bacteria produce endospores?
Clostridium tetani
Clostridium perfringens
Clostridium botulinum
Bacillus anthraxis
How do you gram stain bacteria?
Crystal violet and iodine
Ethanol wash
Counterstain with safranin (pink)
What is the difference between gram positive and gram negative?
\+ = thicker peptidoglycan wall - = extra membrane so LPS, porins in it
Which bacteria don’t gram stain and why? What do you use instead?
Mycobacteria = waxy lipid coat so called acid fast
Ziehl-Neelsen stain
Chlamydia and mycoplasma = non-gonococcal urethritis = no cell wall, difficult to culture
What is the structure of bacterial cell walls?
Peptidoglycan]NAG and NAM cross linked by short oligopeptides (pentapeptides), and also cross links vertically to link the sheets into a thick layer
What is the periplasm?
Space between two membranes of gram -ve bacteria
Contains hydrolytic enzymes and components of transport
What is in the outer membrane of gram - bacteria?
Porins
Channels essential to import and export
LPS
What are the components of LPS?
O antigen. Highly variable, generates different antigens and therefore serotypes. Important defence against host attack against complement and macrophages.
Core polysaccharide.
A antigen. Endotoxin. Released from dying bacteria. Triggers wide ranging immune response. Recognised by TLR4.
What is the function of the capsule?
Prevents drying during droplet infection
Protects from complement and macrophage
What is the clinical effect of lipid A?
Have to judge when to give antibiotics for patients with bacteraemia- otherwise massive endotoxin release could lead to shock
How do proteins cross the inner cell membrane in bacteria?
N-terminal secretion signal and Sec pathway
Then additional export pathways across periplasm and outer membrane
What is TolC?
An exit duct for large toxin proteins and noxious molecules like antibiotics
How often do E. Coli numbers double in lab culture?
20-30mins
What concentration of bacteria can you just about see in a practical?
10^5/ml
How do bacteria physically divide after chromosome duplication?
FtsZ, a tubulin ancestor involved in cell division localises at midcell, forms ring that tightens, then new membrane and peptidoglycan form at division site
Name 2 facultative anaerobes
Staphylococcus (aureus, epidermidis) Streptococcus (pyogenes, pneumonia, viridans) E coli Enterococcus faecalis Salmonella
Name 2 strict anaerobes
Clostridium
Bacteriodes
Discuss the structure of the mechanism that rotates the flagellum
Universal joint motor that rotates 360 degrees
H+ switch (H+ into cell)
Rings around motor that stop the rotation from damaging the cell membrane
How do bacteria choose where to go?
Chemotaxis
Chemoreceptors at nose of cell –> histidine-aspartate phosphorelay –> flagellar motor switch –> CCW to swim, CW to ‘tumble’ and randomly change direction
How fast can bacteria move?
30 microns/s
Define operon
Contiguous genes whose transcription is coupled
What is HAP?
Histidine-aspartate phosphorelay signalling pathways
What is global regulation?
Co-regulation of expression of regulons
Define regulon
A set of operons switched on and off by the same phosphorelays
What is quorum sensing?
Where some pathogens switch on their virulence genes when its population reaches a specific density
How does quorum sensing work?
Bacteria release small signal molecules and sense its concentration
What does pseudomonas aeruginosa switch on with quorum sensing?
Genes for swarming, polysaccharide production, biofilm formation, virulence
What are K antigens of Salmonella and E Coli?
Capsular polysaccharide
How does the bacterial genome change?
- Mutations
- DNA rearrangements due to random capture and insertion of insertion sequences (through their own recombination system)
- Transposons (often have IS at their ends)
What can transposons encode that is useful to the pathogen? And necessary for itself?
Antibiotic/heavy metal resistance, virulence genes
DNA transfer genes
Plasmid replication genes
What are pathogenicity islands?
Genes required for infection and survival in the host are found in groups within the genome
What is the evidence for pathogenicity islands having joined recently?
Differing GC content of surrounding chromosomal DNA
What does salmonella encode on its pathogenicity islands?
SP1 - entry to non-phagocytic cells
SP2 - survival in macrophages
How do bacteria acquire and transfer DNA?
- Transduction - bacteriophage viruses transfer DNA
- Transformation - uptake DNA released from dead lysed bacteria
- Conjugation - direct transfer between two bacteria via a sex pilus
How was transformation discovered?
Released that dead capsulated Strep Pneumoniae transformed live non-capsulated bacteria into capsulated agents that could kill mice
Where is lactobacillus found?
Oral cavity, urethra/vagina
TLR2
Recognises peptidoglycan
TLR4
Recognises LPS
TLR5
Recognises flagellin
TLR9
Recognises unmethylated DNA
Discuss virulence genes
- Specialised: not constitutively expressed but switched on in response to host environmental signals, global regulation
- carried on plasmids, bacteriophage and/or pathogenicity islands
- encode proteins or other molecules that are exported and secreted or are delivered into host cells
How do uropathogenic E Coli colonise the host?
P-pilus adhesin binds a kidney glycolipid receptor
What is the most common cause of UTIs?
E coli from the host’s own colon flora ascending
How does UPEC cause disease?
Haemolysin forms pores
LPS triggers inflammation
How does proteus cause infection?
Urease cleaves urea to ammonia, increases pH, salt precipitates out, causes kidney stones
How are type 1 and P-pili assembled on UPEC?
- Pilus subunits pumped across inner membrane by SEC
- Chaperones transfer across to usher proteins with an adhesin at the top
- Another system pushes the pili out through the usher proteins far enough to interact with the kidney cell
Why does UPEC recur?
superficial epithelial cells undergo exfoliation due to urine flow, UPEC can invade underlying immature cells where they persist as quiescent reservoirs and aren’t reached by antibiotics. Can then resurge and enter bladder lumen –> further acute infection
How does EPEC colonise the colon?
- Interaction with host cytoskeleton
- Injects effector cells using specialised needles – including Tir (translocated intimin receptor)
- Bacterial surface protein intimin binds Tir
- Subverts host cell signal transduction
- Induces actin polymers to form a pedestal
Name some bacteria that form biofilms
Streptococcus mutans - caries
Staphylococci that colonise catheters
Pseudomonas aeruginosa tat colonise contact lenses
What can pseudomonas aeruginosa cause?
Burns
Wounds
Eye infections
Nosocomial UTI
Pseudomonas biofilms: where and what do they release?
Cystic fibrosis sufferers lungs
Alginate polysaccharide - protect biofilm from host immune response and antimicrobials
How does listeria colonise the host?
ZIPPER: bind, invasins mimic eukaryotic ligands like fibronectin (in host ECM that binds integrins), cytoskeletal rearrangement, receptor mediated endocytosis
What type of bacterium is listeria?
Gram +ve rod
Can cross BBB and can endanger fetus
Food borne
How does salmonella colonise the host? Where are the genes for this found?
TRIGGER: bacterial needles, bacterial effector proteins SipA SipC, some bind to actin, some subvert signalling pathways SptP, cytoskeletal rearrangement, internalisation
Genes found on SPI-1