Bacteriology Flashcards
Characteristics of Enterobacteriaceae
Gram negative bacilli
Grow on MacConkey
Ability to ferment glucose
Oxidase negative
Reduce nitrates to nitrites
Also found free living in the environment and as natural inhabitants of the intestinal tract of humans and animals
E. coli
Causes UTI, septicemia, neonatal sepsis and meningitis, and diarrhea
Lactose positive, indole positive, MR positive, motility positive
H2S negative, VP negative, citrate negative, urease negative
Predominant aerobe in GI tract
Green metallic sheen on EMB
Gray colonies on BAP, A/A and gas on TSI, LF on MAC, yellow on HE, yellow on XLD
E. coli O157:H7 causes enterohemorrhagic diarrhea - clear colonies on MACSORB because it does not ferment sorbitol
Klebsiella
Causes pneumonia, UTI, and septicemia
Highly mucoid colonies on all media
LF on MAC, A/A and gas on TSI, yellow on HE, yellow on XLD
VP positive, citrate positive, lactose positive, urease positive
H2S negative, indole negative (usually), MR negative, motility negative, ornithine decarboxylase negative
K. oxytoca - indole pos
K. pneumoniae - indole negative
Serratia
Opportunistic pathogen that causes pneumonia and septicemia in immunosuppressed people
Bright red colonies on some media
K/A on TSI, slow LF on MAC, colorless on HE, yellow or colorless on XLD
VP positive, citrate positive, motility positive
Lactose negative, H2S negative, indole negative, urease negative
S. marcescens - lysine pos, ornithine pos
S. liquefaciens - lysine neg, ornithine neg
Proteus
Causes UTI, wound infections, and septicemia
Swarms and smells like chocolate cake
NFL on MAC (doesn’t grow well on MAC in general), colorless on HE, yellow or colorless with or without black centers on XLD
H2S positive, MR positive, urease positive, motility positive
Lactose negative
P. vulgaris - indole pos (Vulgaris Indole Positive), A/A on TSI
P. mirabilis - indole neg, K/A on TSI
Providencia
Causes UTI and diarrhea
Indole positive, MR positive, citrate positive, motility positive
Lactose negative, H2S negative, VP negative
K/A on TSI, NLF on MAC, colorless on HE, yellow or colorless on XLD
Morganella
Mainly nosocomial infections including UTI and wound infections
Similar to Proteus but non swarming
Indole positive, MR positive, weakly urease positive
Lactose negative, H2S negative, VP negative, citrate negative
Citrobacter
Causes nosocomial infections
H2S positive, MR positive, citrate positive (duh), motility positive, ONPG positive
VP negative, lysine decarboxylase negative
Slow lactose fermenter on MAC
Clear colonies on SS and HE
C. freundii - indole neg
C. koseri - indole pos
Yersinia
Causes diarrhea (enterocolitica) and plague (pestis)
MR positive, urease positive
Lactose negative, H2S negative, VP negative, citrate negative
Gram negative coccobacilli with bipolar staining
Grow “bulls-eye” colonies on CIN agar
Shigella
Causes dysentery (shigellosis)
Most communicable of bacterial diarrheas
Found primarily in crowded or substandard conditions (day-cares, jails/prison, etc.)
MR positive
Lactose negative, H2S negative, VP negative, citrate negative, urease negative, motility negative
Clear colonies on MAC and HE
S. dysenteriae is the most severe form
S. sonnei is the most common form
Serogrouped by O antigens (A, B, C, and D)
Closely related to Escherichia on a molecular basis
Edwardsiella tarda
Opportunistic pathogen
Causes bacteremia and wound infections
H2S positive, indole positive, MR positive, motility positive
Lactose negative, VP negative, citrate negative, urease negative
Clear on MAC
Chief reservoirs are reptiles and fresh water fish
Infections often involve aquatic environments
Salmonella
Causes typhoid fever, bacteremia, and enterocolitis
H2S positive, MR positive, motility positive, lysine decarboxylase positive
Lactose negative, indole negative, VP negative, urease negative, ONPG negative
Clear colonies on MAC and black colonies on HE
Found in poultry and can be transmitted by reptiles (bearded dragons specifically)
S. typhi has Vi antigen
Grouped by O antigens (A, B, C) and serotyped by H antigens (1 and 2)
Enterobacter
Opportunistic pathogen that causes nosocomial infections
UTI, RTI, and wound infections
Mucoid colonies on all plates
Has same IMViC reactions as Klebsiella
Lactose positive, VP positive, citrate positive, motility positive, ornithine decarboxylase positive
H2S negative, indole negative, MR negative
Aerotolerance testing
Aerobe: grows aerobically on blood and on chocolate agar in CO2 incubator
Capnophilic aerobe: only grows on chocolate agar in CO2 incubator
Facultative anaerobe: grows aerobically on blood, anaerobically on blood, and on chocolate agar in CO2 incubator
Obligate anaerobe: only grows on blood anaerobically
Aerotolerant anaerobe: grows anaerobically on blood and on chocolate agar in CO2 incubator
Organisms that require increase CO2 for incubation
Campylobacter
Haemophilus
Helicobacter
Moraxella catarrhalis
Mycobacterium
Pathogenic Neisseria
Hemolysis reactions on blood agar
Alpha: green/brown zone around colony, partial lysis of RBCs (strep pneumo)
Beta: clear zone around colony, complete lysis of RBCs (Group A strep)
Gamma: no zone of hemolysis, no lysis of RBCs
Staphylococcus spp
Gram positive cocci, typically in clusters
Smooth, convex, opaque colonies on BAP
Catalase positive, bacitracin resistant
Normal flora of the skin, mouth, pharynx, vagina, urethra, and GI tract
Facultative anaerobe
Grows on nonselective media
Salt tolerant
S. aureus
Gram positive cocci, usually in clusters
Typically beta hemolytic and colonies are tan/golden
Coagulase positive
Ferments mannitol (yellow colonies on Mannitol salt agar)
Contains protein A (virulence factor that inhibits phagocytosis)
Can produce exfoliative toxin (causes detachment of granulosum layer in the epidermis)
Spread by direct contact
10-60% of people are carriers
85-90% are resistant to penicillin
Causes skin infections (impetigo, furuncles, cellulitis, etc.), scalded skin syndrome, toxic shock syndrome, food poisoning, acute bacterial endocarditis, pneumonia, and osteomyelitis
Coagulase negative staphylococci (CONS)
Opportunistic pathogen
Common cause of hospital acquired UTI
Gram positive cocci, usually in clusters
White colonies that are usually nonhemolytic
Don’t ferment mannitol (pink on Mannitol salt agar)
Sensitive to novobiocin
Normal flora on skin and mucous membranes
Often contaminant
Usually only speciate if from normally sterile site
50-80% are S. epidermidis
S. saprophyticus
Gram positive cocci, usually in clusters
White to slightly yellow color and nonhemolytic (and smell like dirty socks)
Catalase positive
Coagulase negative
Urease positive
Resistant to novobiocin (only performed when CONS is isolated from urine of females)
Implicated in 10-20% of UTIs, second only to E. coli
Causes UTI (known as “honeymooner’s UTI) and is associated with sexual intercourse and STDs
Micrococcus
Usually nonpathogenic
Found in the environment and on skin, mucous membranes, and the oropharynx
Large Gram positive cocci in pairs, tetrads, and clusters
Often pigmented (bright yellow, orange, pink, tan)
Catalase positive, coagulase negative
Susceptible to bacitracin
Not commonly isolated
Must differentiate from staph
Usually only grow aerobically
Streptococcus spp
Oval Gram positive cocci in pairs and chains
<1mm in diameter
White to gray color, translucent or semi opaque
Variable hemolysis reactions
Catalase negative
Facultative anaerobes
Require enriched media with chaining occurring best in broth media
Group A streptococcus (S. pyogenes)
Pyogenic - capable of causing local purulent inflammation or generalized infection, S. pyogenes is named for this characteristic
Oval Gram positive cocci in chains
Grayish-white pinpoint colonies
Usually beta hemolytic with a wide zone
Catalase negative
Sensitive to bacitracin
PYR positive
Hemolysis due to streptolysin S and O (Oyxgen-labile exotoxin that is released)
Can have a hyaluronic acid capsule (helps the organism resist phagocytosis)
Produces DNase (breaks down DNA that allows it to infect pharygeal tissue and skin)
Produces sterokinase (enzyme that inhibits the coagulation cascade, preventing clot formation and allows organism to spread throughout the body)
Produces exotoxin A (virulence factor that decreases the production of antibodies)
Causes skin infections (impetigo, cellulitis), pharyngitis, scarlet fever, toxic shock syndrom, toxic shock-like syndrome, and necrotizing fasciitis
If not treated right away can progress into rheumatic fever and acute glomerulonephritis
Group B streptococcus (S. agalactiae)
Normal flora of female genital tract
Oval Gram positive cocci in chains
Slightly larger colonies than GAS
Gray-white color with a narrow zone of beta hemolysis
Can also be nonhemolytic
Catalase negative
PYR negative
Resistant to bacitracin
Sodium hippurate positive
CAMP test positive
Forms a polysaccharide capsule to enhance its ability to cause disease
Vaginal and rectal swabs collected from pregnant women at 35-37 weeks gestation (positive individuals can then receive prophylactic IV penicillin during delivery)
Inoculated in selective broth (LIM or carrot) and plated to BAP after 24 hours
Most common cause of serious infections in infants (including pneumonia, meningitis, and sepsis)
Group D streptococcus (not enterococcus)
Normal in GI tract
Causes nosocomial UTI, wound infections, and bacteremia
Oval Gram positive cocci in chains
Usually nonhemolytic but can be alpha
Esculin positive
Most common S. gallolyticus (used to be S. bovis)
Enterococcus
Normal in mouth, GI tract, female genital tract
Oval GPC in pairs and chains
Usually alpha or nonhemolytic, rarely beta
Catalase negative
Esculin positive, PYR positive, LAP positive
Can grow in 6.5% NaCl
Lancefield group D
Intrinsically resistant to beta lactam antibiotics and are penicillin resistant
Can become resistant to vancomycin
80% are E. faecalis, 15% are E. faecium
Causes UTI, subacute endocarditis (following a severe enterococcal UTI)
Streptococcus pneumoniae
Normal in upper respiratory tract of some
Lancet shaped Gram positive diplococci, frequently encapsulated
Polysaccharide capsule inhibits phagocytosis
Round, translucent, dome shaped colonies
Catalase negative
Alpha hemolytic
Bile solubility positive
Sensitive to optochin
Positive Quellung reaction (capsule visualization)
Releases IgA proteases (enzyme the cleaves IgA and increases pathogenicity)
No Lancefield group
>80% serotypes based on capsular antigens
Patients produce a rusty colored sputum which is indicative of Strep pneumo
Causes pneumonia (hence the name), meningitis, otitis media (middle ear infection), sepsis in patients with Sickle cell anemia and who are post-splenectomy, and sinusitis
Viridans streptococcus
Normal in oral, respiratory, GI mucosa
Opportunistic pathogens
Frequently cause of subacute bacterial endocarditis
Gingivitis and dental cavities
Gram positive cocci in chains
Usually alpha hemolytic but can be beta or nonhemolytic
Catalase negative
Resistant to optochin
Bile solubility negative
Certain strains (S. sanguis and S. mutans) may produce extracellular polysaccharides
Microaerophilic Streptococcus spp (formerly S. milleri group)
Normal flora of mouth and GI/GU tracts
Infections associated with trauma or surgery
Most common sites are abdomen, head, and neck
Gram positive cocci in pairs and chains
Colonies are half the size of other strep
Usually beta hemolytic but can be alpha or nonhemolytic
Butterscotch or caramel odor
Usually Lancefield group F
PYR negative, VP positive
3 species - S. anginosus, S.constellatus, S. intermedius
Grow better anaerobically
Bacillus spp
Usually contaminants
Gram positive rods
Large spreading beta hemolytic colonies with irregular edges (Medusa head)
Whitish gray but can be pigmented
Catalase positive
Motile (usually)
Must rule out B. anthracis
Bacillus anthracis (Anthrax)
One of the most highly pathogenic microorganisms
Contracted from contaminated hides, wool, and meat
Very rare in the United States
Large Gram positive rods with square ends, may be in chains
Oval central to subterminal spores that aren’t swollen
Looks like bamboo
Spores may not be seen in direct smear
Large adherent, nonhemolytic, flat to slightly convex colonies with irregular borders
Ground-glass appearance
Stands up like beaten egg white when touched with a loop
Catalase positive
Nonmotile
Potential bioterrorism organism
Handle in BSC
Submit to public health lab for confirmation
Helps rule out B. anthracis from B. cereus/other Bacillus spp
Bacillus cereus
Often environmental contaminant
Can cause local and systemic infections and food poisoning
Large Gram positive rods with square ends
Oval central to subterminal spores that aren’t swollen
Looks like bamboo
Large, adherent, beta hemolytic, flat to slightly convex colonies with irregular borders
Ground-glass appearance
Stands up like beaten egg white when touched with a loop
Motile
2nd most important pathogen in the genus
Corynebacterium spp
Normal on skin and mucous membranes
Opportunistic pathogens
Irregular, slightly curved Gram positive rods, nonparallel sides, club shaped ends
“Chinese letters” or palisades
Facultative anaerobe
Grows on most media
Catalase positive
Nonmotile
Called diphtheroids because they resemble C. diphtheriae
Corynebacterium diphtheriae
Cause of diphtheria
Rare in the United States
Irregular, slightly curved Gram positive rods, nonparallel sides, club shaped ends
“Chinese letters” or palisades
Gray-black colonies with brown halos on Tindale agar
Black colonies on cystine tellurite
Loeffler medium stimulates growth and production of metachromatic granules
Catalase positive
Nonmotile
Toxin producing
Identification requires demonstration of toxin production
Corynebacterium jeikeium
Hospital acquired pathogen
Irregular, slightly curved Gram positive rods, nonparallel sides, club shaped ends
“Chinese letters” or palisades
Catalase positive
Rapid sucrose urea negative
Most commonly isolated diphtheroid
Highly resistant to antibiotics
Listeria monocytogenes
Meningitis and septicemia in newborns and immunocompromised people
Common cause of food poisoning from deli meat and soft cheese
Gram positive rods with parallel sides and rounded ends
Arranged as singles, chains, or diphtheroid arrangements
Tiny colonies with narrow zone of indistinct beta hemolysis
Translucent and gray
Catalase positive, hippurate hydrolysis positive, esculin positive, CAMP positive
Tumbling motility on wet mount
Umbrella growth in motility agar at RT but no at 35 degrees C
Grows from 0.5-45 degrees C
Cold enrichment may be used
Catalase differentiates from Group B strep
Motility differentiates from diphtheroids
Nocardia
Causes skin infections in immunocompetent people and invasive pulmonary and disseminated infections in immunocompromised people
Gram positive rods with fine branching filaments and fragmentation
Often look beaded
Very slow growing
Wrinkled, dry, chalky white appearance on BAP
Beta hemolytic
Catalase positive
Partially acid fast
N. brasiliensis most common species to cause skin infections
N. asteroides most common species to cause lung infections
Neisseria spp
Gram negative diplococci
Squished together to make a coffee bean shape
Aerobic or facultative
Pathogens are capnophilic
Catalase positive, oxidase positive
N. gonorrhoeae
Causes gonorrhea, salpingitis, and ophthalmia of the newborn
Intracellular and extracellular Gram negative diplococci
Diagnostic in urethral discharge from symptomatic males
Culture confirmation required for females
Grows on CHOC and Neisseria selective agars
Colonies are small, grayish-white or tan
Five different colony types so it could end up looking mixed
Utilizes only glucose
Susceptible to drying and cold
DO NOT REFRIGERATE
Culture is preferred for non-genital specimens and those from children
Should confirm by different method (PCR)