Bacterial Cultivation Flashcards

1
Q

What conditions are required for bacterial growth

A

Moisture, temperature, pH, Gas (O2), nutrients and ionic balance/salinity

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2
Q

What is a catabolic reaction

A

Energy releasing reaction

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3
Q

What is an anabolic reaction

A

Building energy into food

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4
Q

What are the 4 macronutrients bacteria need for growth

A

Proteins, lipids, carbohydrates and nucleic acids

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5
Q

What are the 4 key elements bacteria need for growth

A

Carbon, oxygen, nitrogen and phosphorus

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6
Q

What is ‘media’

A

The nutrition given

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7
Q

What are the two general types of media used

A

Chemically defined media and undefined complex media

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8
Q

What are the three main examples of undefined media

A

Tryptone, yeast extract and NaCl

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9
Q

How is media provided in the lab

A

Either in liquid broth or solid agar

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10
Q

What are the two things we can measure in bacterial growth

A

Population density and population number

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11
Q

What are the two things we can calculate in bacterial growth

A

Growth rate and generation time

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12
Q

How is population density measured

A

Measures light scattering by cells (used to assume PD)

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13
Q

What are the pros of measuring population density

A

-Simple and convenient
- non-destructive and can be done continuously

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14
Q

What are the cons of measuring population density

A
  • low sensitivity (>10^6 cells per ml lower limit)
  • not accurate as light can be absorbed by dead cells too (not viable cells)
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15
Q

How do we measure population number

A

Extrapolate from colony forming units (CFU) to give cell numbers in original culture

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16
Q

What are the pros of measuring population number

A

Only measures viable cells

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17
Q

What are the cons of measuring population number

A

-Underestimates for cells in chains or clusters
- laborious and slow (can’t do continuously)

18
Q

Which phase of batch culture does growth become logarithmic

A

Exponential phase

19
Q

What is the equation to determine final cell number

A

Final cell number (N)= Initial cell number (No) x 2^number of generations (n)

20
Q

What is the equation for generation time

A

Generation time (g) = duration of exponential growth (t)/number of generations (n)

21
Q

Why is generation time useful

A
  • compares different bacterial species growing in same condition
  • compares same bacterial species in different conditions
  • can show whether data is statistically significant or not
22
Q

What are extremophiles

A

Organisms that grow under harsh conditions

23
Q

What are cardinal temperatures

A

Minimum, optimum and maximum temperatures an organism can survive at

24
Q

Which species of bacteria has a min temp of 4 degrees an optimum of 39 and a maximum of around 48 degrees

A

Mesophiles

25
What is an organism’s optimum pH based on
Extracellular environment only
26
What is intracellular/ cytoplasmic pH typically
7 (ish)
27
Why is a buffer needed during batch growth
pH can change during batch growth
28
What are two buffers used to maintain optimum pH in batch growth
Na2HPO4 and KH2PO4
29
What is salinity
Salt (NaCl) concentration in environment
30
What is salinity
Salt concentrations in environment
31
What species of bacteria can grow in the oxic zone (oxygenated)
Aerobic, facultative, microaerophilic, aerotolerant
32
What species of bacteria can grow in the anoxic zone
Anaerobic, facultative, microaerophilic and aerotolerant
33
What are chemostats/ bioreactors
Continuous culture where the system is open and fresh media is added and cells are removed via a pumping system
34
What is the advantage of chemostats
-Growth is at a steady state Important in bioprocessing
35
What happens once equilibrium is reached in a chemostat
Volume, population density, growth rate and metabolic state remain constant
36
What volumes are used in lab chemostats
0.5-10 litres
37
What volumes are used in industrial chemostats
Up to 1x10^6 litres
38
How do you calculate dilution rate (D) in a chemostat
Dilution rate (D)= Flow rate (F)/ Volume (V)
39
What does the term µ refer to
The growth rate in a chemostat (related to the slope and therefore µ= D (dilution rate) )
40
What are Microfluidics
Nanochemostats which are an emerging technology aiding the understanding of bacterial physiology
41
How do microfluidics work
Build an agar pad with tracks to hold cells in some form, of order to maintain order, growth and follow individual cells
42
Why are microfluidics important
More effective than microscope timelapses as colonies do not become congested