Amino Acids and Proteins Flashcards
Class of inherited errors of metabolism in which there is an enzyme defect that inhibits the body’s ability to metabolize certain amino acids
Aminoacidopathies
Cause of phenylketonuria
Phenylalanine hydroxylase (PAH)
deficiency
Urine odor of patient with phenylketonuria
Musty/Mousy odor
Patients with PKU may experience
Mental retardation
Microcephaly
A co-factor in the enzymatic hydroxylation of phenylalanine, tryptophan, and tyrosine
Tetrahydrobiopterin
Non-protein chemical/entity that must bind to a particular enzyme before a reaction occurs
Co-factor
Allows early detection IEM and early implementation of the treatment
Newborn screening test
Goal of PKU treatment
Maintain blood level of phenylalanine (2-10 mg/dL or 120- 160 μmol/L)
First drug to manage PKU
Kuvan (sapropterin dihydrochloride)
Positive result of Ferric Chloride Tube Test for PKU
Permanent blue-green color
Positive result of Guthrie Bacterial Inhibition Test for PKU
Bacterial growth
Inhibitor of B. subtilis
B-2-thienylalanine
Reference method for quantitative serum phenylalanine
High-Performance Liquid Chromatography (HPLC)
Used in screening for inherited disorders in newborns
Tandem Mass Spectrometry (MS/MS)
Characterized by the excretion of tyrosine and tyrosine catabolites in urine
Tyrosinemia
Cause of type 1 tyrosinemia
Fumarylacetoacetate hydrolase deficiency
Most severe form of tyrosinemia
Type 1
Cause of type 2 tyrosinemia
Tyrosine aminotransferase deficiency
Cause of type 3 tyrosinemia
4-hydroxyphenylpyruvate dioxygenase or p-hydroxyphenylpyruvic acid dioxygenase deficiency
Positive result of Ferric chloride tube test for tyrosinemia
Transient green color
Positive result of Nitroso-naphthol test for tyrosinemia
Orange-red color
Drug to treat tyrosinemia
Nitrisinone
Cause of alkaptonuria
Homogentisate oxidase deficiency
Urine color of patient with alkaptonuria
Brownish-black after exposure to air
Positive result of Ferric chloride tube test for alkaptonuria
Deep blue/black
Positive result of Clinitest for alkaptonuria
Yellow precipitate
Positive result of Homogentisic acid test for alkaptonuria
Black
Treatment for alkaptonuria
Vitamin C
Cause of MSUD
α-ketoacid decarboxylase deficiency or defect
MSUD blocks the normal metabolism of the three essential branched-chain amino acids: _____, _____, _____
Leucine
Isoleucine
Valine
Urine odor of patient with MSUD
Maple syrup or burnt sugar odor
Positive result of 2,4-dinitrophenylhydrazine (DNPH) test for MSUD
Yellow precipitate or turbidity
Cause of isovaleric acidemia
Isovaleryl-CoA dehydrogenase deficiency
Urine odor of patients with isovaleric acidemia
Sweaty feet odor, due to build-up of isovaleric acid
Positive result of p-Nitroaniline Test for isovaleric acidemia
Emerald green
Cause of homocystinuria
Cystathionine β-synthase deficiency
Positive result of Cyanide-nitroprusside test for homocystinuria
Red-purple color
Positive result of Silver-nitroprusside test for homocystinuria
Red-purple color
Class of genetic diseases called urea cycle disorders
Citrullinemmia
Types of citrullinemia
TYPE 1: the most common form, lack of the enzyme argininosuccinic acid synthetase (buildup of citrulline and ammonia in the blood)
TYPE 2: caused by a mutation of the gene that makes the protein citrin
Cause of arginosuccinic aciduria
Argininosuccinic acid lyase deficiency
Positive result of Cyanide-Nitroprusside Test for Cystine
Red-purple
Blood samples for amino acid analysis should be drawn after
At least a 6-8 hour fast
Tube and additive used in samples for amino acid analysis
Heparin; green tube
Deproteinization should be performed within _____ of sample collection and analysis should be performed _____
30 minutes
Immediately
In cases that a sample cannot be analyzed immediately, the sample should be
Frozen at −20°C to −40°C
Urinary amino acid analysis can be performed on random specimens. True or False?
True
Urine preservative for protein analyses
Thymol
Method of choice for screening test of amino acids
Thin-layer chromatography
A process that allows the separation of ion and molecules base on affinity to ion exchangers
Ion exchange chromatography/ Ion chromatography
Possess negatively charged group and attract positively charged ion
Cationic exchangers
Possess positively charged group and attract negatively charged ion
Anionic exchangers
Separates ions base on electrophoretic mobility
with the use of applied voltage
Capillary electrophoresis
Technique use to break down selected ions/precursor ions into fragments or product ions (fragments reveal the aspect of the ion)
MS/MS (tandem mass spectrophotometry)
Are polymers of amino acids that are linked covalently through peptide bonds
Proteins
Protein are micromolecules. True or False?
False; macromolecules
All proteins are synthesized in the liver. True or False?
False; except immunoglobulins (plasma cells)
Atoms in protein compound
Carbon
Oxygen
Hydrogen
Nitrogen
Sulfur
4 structures of protein
Primary
Secondary
Tertiary
Quaternary
Linear sequence of amino acids
Primary structure
Protein structure that determines the identity of protein
Primary structure
Specific regular three-dimensional conformations into which portions of the polypeptide chain fold (α-helix; β-pleated sheets; bend conformation)
Secondary structure
Protein structure which adds new property such as strength and flexibility due to polypeptide chain fold
Secondary structure
Actual three-dimensional structure or folding pattern of the protein
Tertiary structure
Refers to overall shape and formation of protein
Tertiary structure
Protein structure with spatial relationship to one another
Tertiary structure
The shape or structure that results from the interaction of more than one protein molecule, or protein subunits
Quaternary structure
Most abundant protein in the body
Collagen
Process where protein loose its shape and functions
Denaturation
Causes of protein denaturation
Heat
Hydrolysis
Strong acids
Alkali
Enzymatic reaction
Exposure to urea
UV light
Classification of proteins by function
Enzymes
Hormones
Transport proteins
Immunoglobulins
Structural proteins
Storage proteins
Energy source
Osmotic source
Catalyze chemical reactions
Enzymes
Chemical messengers that control action of specific organ or system
Hormones
Transport movement of ions, small molecules, or macromolecules
Transport proteins
Mediate the humoral immune response
Immunoglobulins
The only protein not produced by the liver
Immunoglobulins
Proteins for structures of cells and tissues
Structural proteins
Protein that serve as reserves of metal ions and amino acids
Storage proteins
Protein for tissues and muscles
Energy source proteins
Function in the distribution of water throughout the compartments of the body
Osmotic force proteins
Example of osmotic force proteins
Albumin (important in colloid osmotic pressure)
Structural Classification of Proteins (SCOP) database
Class
Fold
Superfamily
Family
Families of Structurally Similar Proteins (FSSP) / Fold Classification is based on
Three-dimensional structure of proteins
Protein that contains peptide chains of only amino acids
Simple Proteins
Examples of globular proteins
Albumin
Hemoglobin
Examples of fibrous proteins
Troponin
Collagen
Consist of a protein and a non-protein (prosthetic) group
Conjugated Proteins
Metals + Proteins
Metalloproteins
Examples of metalloproteins
Ferritin
Ceruloplasmin
Lipids + Proteins
Lipoproteins
Examples of lipoproteins
High Density Lipoprotein
Low Density Lipoprotein
Very Low-Density Lipoprotein
Chylomicrons
Carbohydrates + Protein (10-40% Carbs)
Glycoproteins
Examples of glycoproteins
Haptoglobin
Alpha-1 antitrypsin
Carbohydrates + Proteins (>40% of Carbs)
Mucoproteins
Chromatin – DNA + Histones
Nucleoproteins
The most frequently analyzed of all the proteins
Plasma proteins
Two groups of plasma proteins
Albumin
Globulin
Alpha-1
Alpha-2
Beta
Gamma
Migrates before albumin in a classic electrophoresis
Prealbumin (Transthyretin)
The transport protein for thyroxine (T4) and triiodothyronine (T3) (thyroid hormones)
Prealbumin
Binds with retinol-binding protein (Vitamin A)
Prealbumin
Causes of decreased prealbumin
Hepatic Damage
Acute-phase inflammatory response
Tissue necrosis
Causes of increased prealbumin
Alcoholism
Steroid medication
Chronic Renal failure
Sensitive marker of nutritional status
Prealbumin
In terms of nutritional status, a decrease in prealbumin indicates
Poor nutrition
Most abundant protein in plasma
Albumin
Responsible for nearly 80% of the colloid osmotic pressure (COP) of the intravascular fluid
Albumin
Osmotic pressure exerted by large molecules like albumin which helps fluid stay within the instead of leaking into tissues
Colloid Osmotic Pressure
Concentration of this protein decreases during inflammation
Negative acute-phase reactant protein
Causes of decreased albumin
Malnutrition and malabsorption
Liver disease
Protein-losing enteropathy or gastrointestinal loss
Renal disease
Burns or exfoliative dermatitis
Hypothyroidism
Polydipsia or excess administration of IV fluid
Mutation causing analbuminemia or bisalbuminemia
Sepsis
Causes of increased albumin
Dehydration
After excessive albumin infusion
Albumin with unusual molecular
characteristics
Bisalbuminemia
Increased vascular permeability in the capillary
Sepsis