all combined final Flashcards
4 phases of cell cycle
G1, S, G2, M
true or false?
TRUE
Describe what happens at prophase (3)
Prophase
What happens at prometaphase?
Prometaphase
Describe metaphase
Metaphase
Describe anaphase
Anaphase is pulling apart of sister chromatids.
Describe telophase (2)
•Telophase
Describe cytokinesis: (2)
•Cytokinesis
Just read
okay
Metaphase is a ___________ phase bc as soon as fully done, anaphase occurs
transient
What is the key entry point of mitosis and what is it dependent on?
The key start point of mitosis is NEB and it is highly dependent on cdk1-cyclin B
Describe how cdk1-cyclin B causes NEB?
- phosphorylation of nuclear lamins –> disassembly of nuclear lamina –> nuclear envelope breakdown
what other activities are dependent on CDK1-cyclin B activity?
Assembly of mitotic spindle and capture of chromosomes by spindle microtubules depends on Cdk1-cyclin B activity
Therefore, NEB, mitotic spindle assembly, and spindle attachment are all dependent on cdk1-cyclin B. true or false?
TRUE
What requires cdk1 inactivation? Explain.
Spindle elongation and separation of sister chromatids in anaphase require inactivation of Cdk1.
Explain how cdk inactivation occurs and what it is necessary for (2):
•APC/C (Anaphase Promoting Complex/Cyclosome) ubiquitinates cyclins –> leading to cyclin destruction –> inactivation of Cdks
What are the 2 approaches to studying the cell cycle?
•Genetic screens in S. cerevisiae and S. pombe –> genetic
Describe the genetic screen experiments that were done on yeast cell cycle
- large-scale mutagenesis and screen for temp sensitive mutants (cause protein to not fold properly but at lower temps, will fold properly, but increasing temp will prevent folding and give mutant phenotype)
Yeast ts-mutants can be isolated that arrest cell division with a morphology corresponding to a specific stage in the cell cycle. true or false?
TRUE
What does a metaphase arrest result from? (general statement)
gene required for anaphase is mutated
What does a late anaphase arrest result from? (general statement)
gene required for cytokinesis is mutated
What specifically were the important results found in the yeast study of arrest?
One gene important in pombe - cdc2
Describe the procedure that was done to determine the gene that caused the cell cycle arrest in S. pombe:
•S. pombe cdc2 = G2/M regulator
Describe cloning of the S. cerevisiae cdc28 (G1/S regulator)
Genetic screens in S. cerevisiae identified the cdc28 gene, required for G1/S
Just read
okay
Lil more reading
okay
They started just calling cdc28 and cdc2 as what?
CDK1
Describe how they determined that CDK1 is a kinase?
•in vitro kinase assay
So, describe the experiment that they did that shows the cyclic activity of CDK1:
-synchronize yeast cells (Hydroxyurea block then release)
True or false?
TRUE
Reading is for champions. Are you a champion?
Yes
How are mitosis and meiosis similar?
•entry into meiosis - NEB (aka maturation) - is similar in many respects to entry into mitosis
•meiosis II is very similar to a mitotic division (sister chromatids segregate)
homologues
Describe how meiosis is regulated:
-prophase –> NEB (progesterone)
meiosis is followed by what?
zygote formation and specialized rapid mitotic cell divisions (early embryo)
___________ causes nuclear breakdown, meiosis progresses until metaphase II and the ___________ triggers completion of meiosis and you get rapid mitotic divisions of embryogenesis
oocyte
Describe meiosis regulation
Oocytes arrest in prophase of meiosis I until Progesterone triggers maturation.
Remains in meiosis II until what?
Remains in meiosis II until fertilization
Describe the experiment that started the biochemical approach to cell cycle and what important component of regulation it introduced
-Remove cytoplasm from mitotically cycling embryos (eggs that have been released from meiosis II arrest by fertilization or in vitro activation)
Describe the experiment that showed cyclic character of MPF
•1977 - Cytoplasm taken from embryos at given times before or after activation - has different abilities to induce maturation in arrested oocytes.
He also took cytoplasm from ________ arrested, inject into immature oocyte and could promote maturation
csf
Explain how the cyclic nature of MPF was proven to require protein synthesis
•Cycloheximide (blocks protein synthesis) added to dividing embryo leads to arrest before nuclear envelope breakdown (prophase arrest).
True or false?
TRUE
Describe the identification of cyclin B
35S-Met added to eggs to label all proteins.
Describe CSF arrest and CSF extracts:
CSF arrest: after completion of meiosis I, eggs enter meiosis II and arrest in metaphase.
Describe the in vitro mitotic cell cycle using CSF extracts and how it showed the necessity of cyclin B for entry into mitosis:
•Production of cycling extracts: cytoplasm from CSF arrested eggs + sperm nuclei + ATP + Ca2+
How did the yeast work and cyclin work come together?
•1989 -Affinity purification of Cdk1 from starfish oocytes. Cyclin B copurifies.
So they co-purified and MPF was identified as cdk1-cyclin. True or false?
TRUE
Name the different cdk-cyclin pairs that are active at different phases of the cell cycle:
G1 CDK –> CDK4-CyclinD or CDK6-cyclinD
All Cdk’s are ___________ kinases that depend on a cyclin partner for activity and specificity.
Ser/Thr
Describe the process of activation of CDKs: (4)
1.cyclin binding
So describe the multi-functionality of CDK7
So cdk7 has multiple important roles, it phosphorylates CTD of RNA pol II and phosphorylates cdk1 and cdk2 in order to activate them
Describe wee1 kinase
Wee1 kinase is an inactivating kinase, so the phosphorylation from wee1 kinase inactivates cdk, so it needs to be removed from cdk for activation (cdc25 phosphatase does this)
Describe the positive feedback loop of CDK1:
Positive feedback loop occurs because active cdk can phosphorylate cdc25 and wee1.
Prophase events
•chromosome condensation.
Events of prophase all occur bc of cdk1 and then a critical level is reached that allows for __________
segregation
in Prophase:
Condensin forms a ring that is thought to loop together parts of the same chromosome to condense it.
Explain why interphase chromosomes are decondensed, why prophase are condensed, and describe what is needed for condensation:
•Interphase chromosomes are decondensed - allows for transcription and for DNA replication at S-phase
Prometaphase events
•nuclear envelope breakdown (NEB)
Describe nuclear envelope breakdown
•NEB is the key initiating event of mitosis.
True or false?
TRUE
Describe the mitotic spindles (characteristics and types):
They are polar, having a minus end at the centrosome and plus end that goes out
What is this?
Astral microtubules
What is this?
interpolar microtubules
What is this?
kinetochore microtubules
Replicated sister chromatids are held together by __________.
cohesins
Separation of sister chromatids requires loss of _____________ and pulling of kinetochore microtubules
kinetochore
Centromere of chromosome binds to kinetochore proteins which binds to spindle. True or false?
TRUE
Describe kinetochore attachment and the shortening of the spindle
Kinetochore attachment:
In prometaphase, kinetochore attachments are ____________.
unstable
Read over WELL
okay
Define the following: monotelic, syntelic, and merotelic:
monotelic - single attachment
Describe how bipolarity is ultimately established in mitosis:
Proper segregation requires capture of both sister chromatids by microtubules from the opposite poles (amphitelic attachment).
Read over well
okay
Why do chromosomes remain at the midzone during metaphase?
In metaphase, chromosomes remain at the midzone because they are attached to each other via cohesins.
Why does anaphase occur? What does this require?
Anaphase occurs when cohesin bonds are broken.
•Destruction of ____________ and ____________ depends on a ____________ ____________, the ____________
securin
What showed that cyclin B gets degraded?
Add 35-S-CycB (radioactive labeled Cyclin B) in the in vitro mitotic cell cycle
How did they identify the sequence for degradation (destruction sequence)?
Make deletions from N-terminus –> assay for degradation in cycling extract
they got rid of first 90 Aas from N-terminus end resulted in non degradation, so something there was important. true or false?
TRUE
What did they notice about the non-degradable cyclin B (delta90CycB)? Explain the significance:
The extract arrests in mitosis (Early anaphase)
So, this arrest was not because it was non-functional. It was its presence when it should’ve been broken down that caused the arrest. True or false?
TRUE
What happens if you add both delta90 and normal cyclin B?
The normal cyclin B gets degraded, but arrest still occurs.
When a cycling extract has CycBD90 added:
mitotic extract
True or false?
TRUE
So summarize what happens if you deleted first 90 AA of cyclin B:
-still able to induce entry into metaphase in Xenopus extracts or eggs
List the 3 aspects of CDK-cyclinB that have been covered:
•MPF (Cdk1-cyclin B) is necessary for entry into mitosis.
How can you determine what sequence within the 90 aa is important for cyclin destruction?
-look for conserved motifs within this region amongst cyclins from different species.
After they found the destruction box, indicate what 2 things they needed to find out about the sequence and how they found them out:
•Determine that this sequence is necessary and sufficient to mediate cyclin B destruction.
What happened to protein A when fused with the destruction box? Explain what was seen on the gel and the meaning.
Protein A fused to destruction box is destroyed over time.
get slide 79 of lec15-16 ?
okay
Explain the relationship between cdk-cycB and the APC
the cdk cyclin B activates the APC, which targets the cyclin for destruction, thereby inactivating cdk
How is the cdk-cycB and APC interaction affected if mitotic extract is used (delta90 cycB or mutation)?
In a situation where cyclin B is incomplete (missing 90 Aas or has a mutation), it is still active in that the cdk can still phosphorylate APC because it can still interact with cyclin B, but it cannot be degraded because destruction box is missing or mutated, so it cannot be ubiquitinated and thus degraded. So, CDK activity keeps up, but APC degradation of cyclin cannot occur despite being active.
Summarize the process of Cyclin B cycling and mitosis:
•Cdk1-cycB promotes NEB and other events of mitosis
How do we get a cycling of active and unactive APC?
Remember, because you get degraded cyclin as a result of active APC, you no longer have cdk activity, meaning you lose APC activity. This makes the cycle.
____________ must be destroyed for late anaphase to proceed
securin
When are cohesin complexes assembled?
s-phase
Cohesins keep sister chromatids together until ______________ of mitosis
anaphase
Describe sister chromatid cohesion:
•During DNA replication (S-phase), cohesin complexes assemble and keep sister chromatids together.
_______ is important bc it is the subunit (of cohesion) that is proteolytically cleaved during anaphase - cut in half
scc1
Key event of anaphase:
cleavage of scc1 protein (removal of cohesin ring allows for sister chromatid separation)
3) delta90 Cyclin B
1) 2 sister chromatids are separated to the daughter nuclei
Molecularly, what happens during anaphase to get separation of sister chromatids? Start with sister chromatids being together.
Sister chromatids together bc of cohesin
Indicate when APC mutants arrest and the state of the chromosomes:
APC mutants arrest in metaphase with sister chromatids still associated
Indicate when stabilized cyclin B arrests and the state of the chromosomes:
•stabilized cyclin B results in arrest with sister chromatids separated (early anaphase - cannot proceed to late anaphase)
What happens in securin mutants?
Securin mutants mean that you get active separase when you shouldn’t, meaning you get faulty and premature separation (before anaphase)
What happens securin D-box mutants?
•D-box mutant of Securin results in failed sister chromatid segregation, just like APC mutants.
The main function of APC is to target __________, and the main purpose of __________is to prevent anaphase
securin
3) APC/securin double mutant
1) would look just like WT, separated chromatids because separase would prematurely separate before anaphase
Explain why APC/securin double mutant gets separation AND arrests in late anaphase:
Separation makes sense because securin mutation means it premature separation as a result of active separase
Securin prevents anaphase by protecting ________. APC promotes anaphase by promoting Securin destruction.
scc1
3) APC/securin double mutant
1) No because got degraded by separase
How did they discover separase?
Took securin protein, fused it to beads and identified proteins that can bind to it (like a Co-IP). They found separase
What did separase mutant show?
no separation, looks like APC mutant!
true or false?
TRUE
Describe what is expected from a separase/securin double mutant
looks like separase mutant (or APC mutant) because securin is only needed to inactivate separase, which is not active bc of the mutation
Mutants with stabilized scc1 arrest where?
metaphase
Briefly indicate the Securin, Scc1 and Separase interactions
•Prior to anaphase securin binds to and inhibits separase.
What keeps the APC inactive?
Spindle assembly checkpoint (SAC)
Describe the introductory experiment to the SAC
•Treatment of cells with colchicine or vinblastine (microtubule destabilizing drugs) or with taxol (microtubule stabilizing drug) leads to a mitotic arrest. Cdk activity is high, cyclin B and securin are stable.
Describe how the Spindle Assembly Checkpoint works:
•The APC is kept inactive until all kinetochores have made stable connections to spindle microtubules from both poles.
As proper attachment occurs, SAC is inactivated at that kinetochore. True or false?
TRUE
Mad2 is activated when SAC is activate (it is a part of SAC), promotes the inhibition of what?
cdc20 of APC
SAC is recruited to what?
unattached kinetochores
How does mad2 work?
•Mad2 component of SAC is recruited to kinetochore, activated, released.
Describe the kiss and run model of sac:
Mad2 cycles off of kinetochores as long as it is not occupied
true or false?
TRUE
Describe what happens in prometaphase, then metaphase, then anaphase as a result of APC/C and SAC activity
In prometaphase, some chromosomes are properly attached while others are still unattached or have monotelic attachments
Run through diagram on slide 98 of 15/16
okay
slide 100
okay
As microtubules gets shortened, it stays attached, causing pull force that drives anaphase B
collar
Anaphase is initiated by ___________ mediated destruction of ___________ and ___________
APC/C
Describe what initiates anaphase A and B respectively and what they result in:
•Anaphase A - Securin destruction –> loss of cohesion - pulling forces of kinetochore microtubules partially separates sister chromatids
What does this describe?
cytokinesis
Describe the midbody in cytokinesis:
Cytokinesis continues until a thin bridge connects the two cells. This contains remnants of the central spindle, actin/myosin and matrix material.
Important for determining where cytokinesis occurred in the first place.
Interpolar microtubules
________________ _________________ release signal that instruct cytokinesis to occur at this site
Interpolar microtubules
Them together pulls the membrane together
actin
myosin II in contraction of non-muscle cells:
Myosin is a motor protein