AAMC FL 1: Bio/Biochem Flashcards
- Reviewable content: If a mutation is only expressed in somatic/cancerous cells, can it be inherited by offspring?
- Date: 6/16/2022
- Question: 3
- Content: 1C: Transmission of heritable info from generation to generation and the processes that increase genetic diversity
- Skill: 2: Scientific reasoning
- Error Description/ Category: Missed and misinterpreted important info in the passage
NO: Mutations that are expressed in somatic/ cancerous can’t be inherited by offspring OR at least its not v likely. These mutations would have to occur in the germ line for them to be inherited by the offspring
- Reviewable content: What usually codes for a gene, an intron or an exon? Which is usually spliced out?
- Date: 6/16/2022
- Question: 5
- Content: 1B: Transmission of genetic info from the gene to the protein
- Skill: Scientific reasoning and problem solving
- Error Description/ Category: Guessed
- Exons usually code for genes, not introns, so they are not spliced out
- Introns are non-coding sections of an RNA transcript or the DNA encoding and are .: spliced out before the RNA is translated to protein
- Reviewable content: What can happen to exons at splice acceptor sites when mutations occur?
- Date: 6/16/2022
- Question: 5
- Content: 1B: Transmission of genetic info from the gene to the protein
- Skill: 2: Scientific reasoning and problem solving
- Error Description/ Category: Guessed
Splice acceptor sites can allow exons to be omitted when mutations occur
- Reviewable content: What are the function of chaperone proteins? What about clathrin?
- Date: 6/16/2022
- Question: 5
- Content: 1A: Structure and function of proteins and their constituent amino acids
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Got correct but wanted to study the concepts
- Chaperone proteins facilitate proper protein folding and inhibit the formation of non functional protein aggregates
- Clathrin functions in the formation of vesicles for intracellular trafficking
- Reviewable content: What is a nuclear localization signal?
- Date: 6/16/2022
- Question: 8
- Content:2A: Assemblies of molecules, cells, and groups of cells within single cellular and multicellular organisms
- Skill: 2: Scientific reasoning
- Error Description/ Category: Missed and misinterpreted important info in the passage
A sequence that tags the protein for it to be transported into the nucleus
- Reviewable content: What is a signal sequence? Where are they located? Where are they normally found?
- Date: 6/16/2022
- Question: 8
- Content:2A: Assemblies of molecules, cells, and groups of cells within single cellular and multicellular organisms
- Skill: 2: Scientific reasoning
- Error Description/ Category: Missed and misinterpreted important info in the passage
- Signal to a ribosome that translation need to be continued in the rough endoplasmic reticulum
- 5’ region of a mature mRNA sequence
- On a protein that is secreted or that will locate to the cell membrane
- Reviewable content: What are two things that are absent in mature mRNA?
- Date: 6/16/2022
- Question: 8
- Content:2A: Assemblies of molecules, cells, and groups of cells within single cellular and multicellular organisms
- Skill: 2: Scientific reasoning
- Error Description/ Category: Missed and misinterpreted important info in the passage
Introns and promoters
- Reviewable content: What is chemiosomosis?
- Date: 6/16/2022
- Question: 10
- Content: 1D: Principles of bioenergetics and fuel molecule metabolism
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Got correct but wanted to study the concepts
The actual production of ATP in cellular respiration that involves the pumping of protons through the special channels in the mem of the mitochondria from the inner to the outer compartment -> This proton gradient is what then drive ATP synthase to produce ATP
- Reviewable content: What is the only step in cellular respiration where NAD+/ NADH is neither oxidized nor reduced? Glycolysis, chemiosmosis, citric acid/ Kreb’s/TCA cycle, or the ETC?
- Date: 6/16/2022
- Question: 10
- Content: 1D: Principles of bioenergetics and fuel molecule metabolism
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Got correct but wanted to study the concepts
Chemiososmosis
- Reviewable content: During the invitation of muscle contraction, myosin binds to actin after troponin binds to what? AKA what ion plays a role in myosin- actin binding during skeletal contraction? What does it allow?
- Date: 6/16/2022
- Question: 12
- Content:3B: Structure and integrative functions of the main organ systems
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Got correct but wanted to study the concepts
- Ca2+ ions
- They bind to troponin and allows tropomyosin to move .: freeing the site of interaction bt actin and myosin
- Reviewable content: What is the total number of fused rings present in a steroid?
- Date: 6/16/2022
- Question: 13
- Content: 2A: Assemblies of molecules, cells, and groups of cells within single cellular and multicellular organisms
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Got correct but wanted to study the concepts
A steroid is composed of a 6-6-6-5 fused ring assembly which is a total of 4 fused rings
- Reviewable content: Let’s say someone has a diseases that results in motor seizures due to massive synchronous firing of neurons in a small area of the brain. A drug for the treatment of this disease would be most effective if it caused what?
- Date: 6/16/2022
- Question: 14
- Content:3A: Structures and functions of the nervous systems and ways in which these symptoms could coordinate the organ systems
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Couldn’t decide bt two answers
An increase in the the threshold that would make it more challenging for a neuron to fire an action potential. This would reduce the frequency of downstream neuron depolarization molecules resulting in a relief of symptoms
- Reviewable content: Influx/ efflux of what ions leads to neuron depolarization and thus action potenital firing? Where are there higher concentrations of these ions in the cell? When does repolarization and hyperpolarization occur?
- Date: 6/16/2022
- Question: 14
- Content:3A: Structures and functions of the nervous systems and ways in which these symptoms could coordinate the organ systems
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Couldn’t decide bt two answers
- There is more sodium outside of the cell and there is less inside the cell, whereas there is more potassium inside the cell and less outside of the cell
- Influx of sodium coming into the cell causes depolarization .: influx of potassium causes repolarization
- Hyperpolarization can be caused by opening channels that allow positive ions to move out of the cell so efflux of potassium ions while sodium channels rest
- Reviewable content: What happens to the membrane potential as depolarization occurs?
- Date: 6/16/2022
- Question: 14
- Content:3A: Structures and functions of the nervous systems and ways in which these symptoms could coordinate the organ systems
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Couldn’t decide bt two answers
It becomes more positive or less negative since resting potential is already negative
- Reviewable content: When concentrated urine is being produced, in which region of the kidney will the filtrate reach its highest concentration? Why?
- Date: 6/16/2022
- Question: 15
- Content: 3B: Structure and integrative functions of the main organ systems
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Guessed but still got it right so wanted to review the concept
The medullary portion of the collecting duct: This is the final structure in which water reabsorption occurs, which concentrates filtrate. The medullary portion of the collecting duct is the last portion of the tubules where reabsorption can occur. In this portion the tubule that follows, there will be no more reabosrption
Reviewable content: What is expected in kinetic studies in terms of protein activity? What does this mean?
- Date: 6/16/2022
- Question: 16
- Content: 1A: Structure and function of proteins and their constituent amino acids
- Skill: 3: Reasoning about the design and execution of research
- Error Description/ Category: Misinterpreted the graph and question -> Didn’t realize it said NOT
- In kinetic studies, protein activity is just expected to increase w temp, assuming the protein does not thermally denature
- This means that they are studying some other aspect (in this question it was the presence of cholesterol AKA membrane fluidity to see how it played a role in protein activity) -> They weren’t focused on temp
- Reviewable content: What is the function of Na+K+ ATPase during a neuronal action potential?
- Date: 6/16/2022
- Question: 18
- Content:3A: Structures and functions of the nervous systems and ways in which these symptoms could coordinate the organ systems
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Honestly just forgot
Restoration of the resting potential
- Reviewable content: In which direction does the Na+K+ ATPase transport ions across the cell membrane upon ATP hydrolysis? Why?
- Date: 6/16/2022
- Question: 19
- Content: 2A: Assemblies of molecules, cells, and groups of cells within single cellular and multicellular organisms
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Got correct but wanted to study the concepts
- 3 Na+ are transported outside the cell and 2 K+ are transported inside the cell against their concentration gradient
- Bc Na+ concentration is higher outside the cell and K+ concentration is higher inside the cell so this is done to restore the membrane potential
- Reviewable content: What kinds of molecules can freely pass through the cell mem via simple diffusion?
- Date: 6/16/2022
- Question: 21
- Content: 2A: Assemblies of molecules, cells, and groups of cells within single cellular and multicellular organisms
- Skill: 2: Scientific reasoning and problem solving
- Error Description/ Category: I was overthinking and couldn’t tell if the molecule was hydrophobic or not
Small, non polar and uncharged molecules like O2, CO2, and water
- Reviewable content: What is the activating event of a protein kinase?
- Date: 6/16/2022
- Question: 22
- Content: 1A: Structure and function of proteins and their constituent amino acids
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Got correct but wanted to study the concepts
Phosphorylation
- Reviewable content: How to active transporters work?
- Date: 6/16/2022
- Question: 24
- Content: 2A: Assemblies of molecules, cells, and groups of cells within single cellular and multicellular organisms
- Skill: 2: Scientific reasoning and problem solving
- Error Description/ Category: Missed info in the passage that said that P-GTP was an ABC transporter protein
They are transporter proteins w ATPase activity so they use ATP to actively transport molecules such as drugs out of cells
- Reviewable content: How do microtubules aid in cell mitosis and meiosis?
- Date: 6/16/2022
- Question: 28
- Content: 2C: Processes of cell divisions differentiation, and specialization
- Skill: 2: Scientific reasoning and problem solving
- Error Description/ Category: Got correct but just wanted to study the concept
Microtubules bind to chromosomes at the level of the kinetochore and regulate their migration/ movement toward opposite poles of the cell during anaphase
- Reviewable content: The initial filtration step in the glomerulus of the mammalian kidney occurs primarily by what? What are the 3 pressures that work tg to regulate filtration in the glomerulus?
- Date: 6/16/2022
- Question: 29
- Content: 3B: Structure and integrative functions of the main organ systems
- Skill: 1: Knowledge of scientific principles
- Error Description/ Category: Guessed but still got it right so wanted to review the concept
- Passive flow due to a pressure difference: There are 3 pressures that work tg to regulate filtration in the glomerulus -> Capillary pressure, capsular hydrostatic pressure, and blood colloid osmotic pressure
- The glomerular capillary pressure will force filtrate from a capillary into Bowman’s capsule and the other two forces promote movement of the filtrate in the opposite direction
Enzymes alter the rate of chemical reactions by doing what 3 things?
Co-localizing substrates, altering local pH, altering substrate shape, NOT substrate primary structure
Why might a new amino acid like orthinine not be likely to be found in proteins synthesized in vivo?
Proteins are generated during translation. In this process, mRNA triplets are read by ribosomes, and tRNA molecules provide the amino acids. Each amino acid is matched to a tRNA molecule carrying a specific anti-codon. A specific amino acid will be added only if it is recognized by its specific codon. Based on the triplet code, no codon recognizes ornithine, thus ornithine cannot integrate proteins primary structure.
If an amino acid isn’t found in a protein that means it isnt able to form peptide bonds: T or F
F: If it is an amino acid it is capable of forming peptide bonds
If an enzyme assay like ornthinine decarboxylase assay is said to be highly specific, what does that mean? What does it measure? What does it not measure?
- They can distinguish their target enzyme activity from the many other enzymatic reactions in a cell
- That means it is highly specific to both the reactions it catalyzes and in their choice of substrates. Therefore, specific enzyme assays like ornithine decarboxylase assay are very specific and only measures the activity of a single chemical reaction catalyzed by ornithine decarboxylase.
- The essay measures the enzymes activity, NOT the quantity of substrate present in the cell
What is the molecule that enter the citric acid/ Kreb’s/ TCA cycle?
Acetyl- CoA
If the lung cells of heavy smokers would be expected to have greatly increased concentrations of cP-450, then what would this mean for the levels of cP-450 DNA and mRNA present in the cell?
- cP-450 DNA is just present in the genome, so its levels do not change specifically in the lung cells
- The levels of cP-450 mRNA should be elevated in smokers as they are almost directly related to the levels of cP-450 protein produced to get rid of the toxins and would .: need the genes in the DNA from the genome of these cells to be expressed further .: resulting in increased mRNA sequences
Cells that are in what stage of the cell cycle are NOT actively dividing?
Interphase
Anaphase
Phase of mitosis where the sister chromatids are being separated
Metaphase
Phase of mitosis in which the chromosomes are locate din the middle of the cell plate
Do mature erythrocytes contain DNA?
No they have no nucleus and .: have no DNA
What are examples of proteins that regulate cell division?
Cyclins and maturation promoting factor (MPF)
Animal viruses are obligate parasites, meaning that……
Animal viruses can only infect animal cells
What is a telomere? What do they contain?
- Telomere refers to a distal end of a chromosome.
- Telomeres contain non-coding repeats.
In general, telomeres are NOT important to bacterial cells because most bacterial chromosomes:
Are circular
How are nucleotides linked together in a single strand of DNA?
Nucleotides are linked to one another by phosphodiester bonds between the sugar base of one nucleotide (thymine) and the phosphate group of the adjacent nucleotide (adenine) in a way that the 5′ end bears a phosphate, and the 3′ end a hydroxyl group.
The flux of sodium into the cytoplasm of a cell results in what? This is required for?
- Membrane depolarization
- Activation of action potentials
When does hyperpolarization occur?
When the membrane potential becomes more electronegative
When does repolarization occur? What causes it? Are sodium channels open during this time?
- Occurs after the membrane has been depolarized
- Is due to the opening of potassium channels.
- Sodium channels are typically closed during this period.
Chloride ions follow the movement of other ions?
Sodium ions
AAMC FL1 Q48 states that: Aldosterone is responsible for the conservation and elimination of which ions?
Conservation of sodium and elimination of potassium
The release is ACTH from the pituitary gland is regulated by what kind of feedback? What does this
-Negative feedba
Gluccocorticoids increase _______ ________, but suppress ______ _______, which is mediated by what?
-Increases protein degradation, but decreases immune function, which is mediated by white blood cells
Increased systemic vascular resistance, increased extracellular volume, and increased cardiac contractility can lead to what?
Hypertension
The most rapid rate of gluconeogenesis will most likely occur in the body when:
Gluconeogenesis becomes active when the body needs more glucose to generate energy .: It is likely to occur when glucose levels are low
What is gluconeogenesis?
Pathway for the synthesis of glucose (a carbohydrate) from other metabolic compounds such as lipids and amino acids.
Gluconeogenesis is increased by high levels of? What does this mean in terms of regulation?
- Cortisol?
- That gluconeogenesis is most likely down regulated when cortisol is inhibited
What is meant by the fact that working skeletal muscles are insulin independent? How exercise affect this blood glucose levels for patients w diabetes?
- Working skeletal muscle can use glucose independently from insulin availability
- Exercise will be able to reduce the levels of glucose in both types of diabetes. (working skeletal muscle is being used more during exercise)
What is the endomembrane system responsible for?
It is the portion of the cells that is in charge of modifying proteins that will be secreted
Despite the effects of diabetes, the brains of diabetic patients still receive adequate nourishment. This is most likely because the brain:
Contains glucose transporter for the uptake of glucose that are insulin- independent
In diabetes mellitus, will use proteins and lipids as a source of glucose, thus increasing, rather than decreasing, leading to
- An increase in appetite
- Unexplained weight loss
- Feelings of fatigue
The kidneys can reabsorb glucose at what rate? If the levels of glucose in the body is too high for the kidneys to filter as is seen in diabetes patients, what can happen?
- 320mg/min
- The levels of glucose in the filtrate that are in excess will pass into urine, leading to a sweet taste.
Glucose transporter proteins in the liver do not require the presence of insulin to facilitate the uptake of glucose. However, insulin does stimulate the first step in the glycolytic pathway within the liver. Therefore, in liver cells, insulin most likely:
- Aids glucose uptake by decreasing the cellular concentration of glucose.
- The question states that insulin stimulates the first step in the glycolytic pathway in the liver. This will result in a decrease of the cellular concentration of glucose. To compensate for the low cellular glucose concentration, glucose uptake is increased.
What is the mechanism that regulates the release of corticotropin releasing hormone (CRH) form the hypothalamus
Negative feedback
In normal conditions, high levels of circulating glucose and other stressors activate the production of
corticotropin- releasing hormone (CRH) from the hypothalamus
CRH will stimulate the pituitary gland to release of ______ which will trigger ________ release from the _________ _________
- ACTH
- Cortisol
- Adrenal cortex
High levels of circulating cortisol will inhibit _______ secretion (negative feedback)
CRH
High levels of circulating cortisol are the stimulus to reduce __________________________
secretion from the hypothalamus
corticotropin releasing hormone (CRH)
The gastrrointestinal epithelial cells are typically highly _____________
Proliferative
What do phosphodiester bonds link?
the 3ʹ carbon atom of one deoxyribose and the 5ʹ carbon atom of another deoxyribose within the DNA molecules AKA the sugar phosphate backbone of DNA
If H+ is a reactant in a rxn how could you manipulate pH to shift the reaction equilibrium to the right to form product?
You could decrease pH so that there would be more H+ ions present in solution. Increasing H+ concentration on the reactant side would shift the equilibrium to the right and favor product formation
Which AA contains sulfhydryl groups?
Cysteine (C)
If the ETC is shut down, what would be the major pathway for ATP production?
Glycolysis
What 3 main steps happens when a macrophage ingests foreign material?
- The material initially becomes trapped in a phagosome.
- The phagosome then fuses with a lysosome to form a phagolysosome.
- Inside the phagolysosome, enzymes digest the foreign object.
What is allosteric inhibition vs competitive inhibition?
- When an inhibitor inhibits enzyme activity by binding to a regulatory site other than the active site of the enzyme
- In contrast, competitive inhibition involves competition for binding to the active site
If a cell contains a v high concentration of chlorine in comparison to outside the cell, how would it maintain this? What kind of transport would need to be used?
In order to maintain a higher concentration of chlorine ions inside the cell, the ions must be moved into the cell against their concentration gradient, which requires energy. This process is active transport
If potassium ion channels are blocked, how would this affect membrane repolarization and the length of an action potential?
If potassium ion channels are blocked, the membrane would fail to repolarize, extending the length of the action potential and simulating excessive muscle contractions.
Where are secretory proteins normally produced and folded?
The rough ER
Proteins w high isoelectric points (like 9) typically have what charge at physiological pH (7)?
+
What is the isoelectric point of a protein?
The pH of a solution at which the net charge of a protein becomes zero
What happens if the solution pH is above the pI of a protein?
The surface of the protein will become predominantly negatively charged
What happens if the solution pH is below the pI of a protein?
The surface of the protein will become predominantly positively charged
What happens if the solution pH = pI of a protein?
Protein is neutral or has a net charge 0
Proteins that are translocated into the nucleus usually contain a
Nuclear localization sequence
If a protein or enzyme activates transcription factors for the target genes of another kind of protein, what this protein or enzyme likely have? Why?
A nuclear localization sequence bc transcription factors are found in the nucleus, meaning the protein or enzyme must enter the nucleus to activate these transcription factors and in turn, these genes
What does ubiquitination do?
Targets a protein for degradation by a proteasome