7.2 : Transcription & Gene Expression Flashcards

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1
Q

where does transcription occur and what is it?

A
  • occurs in the nucleus.
  • a complementary copy of the genetic information in a part of a DNA molecule (a gene) that is made by the building of a molecule of mRNA.
  • when DNA triplet codes are transcribed into codons in mRNA.
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2
Q

enzyme in transcription & what is the differing nucleotide in RNA than DNA?

A
  • RNA polymerase

- RNA has Uridine (U) in RNA synthesis (not Thymine)

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3
Q

what is the coding strand?

A

one strand of the DNA double helix that serves as a template for the synthesis of mRNA.

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4
Q

how does transcription occur?

A

DNA double helix unwinds –> hydrogen bonds are weakened and broken where the gene is being transcribed –> RNA polymerase recognises this & binds to promoter region (‘start signal’ for transcription - located before the gene) –> RNA polymerase draws & selects free nucleotides from the surrounding pool of nucleotides (as nucleotide triphosphates) & matches complementary nucleotides –> working in a 5’-3’ direction–> RNA synthesis occurs (nucleotides joined onto growing mRNA strand = CONDENSATION REACTION).
–> transcription initiated –> RNA polymerase moves along DNA –> unwinding helix –> exposing DNA nucleotides –> RNA nucleotides can pair & mRNA strand is formed & peels away

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5
Q

how do the newly formed complementary bases stay intact?

A

due to hydrogen bonds that form between complementary bases ( A & U, C & G)

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6
Q

where does the condensation reaction occur in a growing mRNA strand?

A

when a growing mRNA strand is forming, the sugar and phosphate groups of adjacent nucleotides condense together by RNA polymerase (enzyme).

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7
Q

when does the transcription process stop?

A

until a base sequence referred to as the ‘transcription termination region’ is reached –> at this signal, RNA polymerase & the new completed mRNA strand –> freed from the site of the gene –> DNA double strand reforms into a compact helix at the site of transcription.
–> mRNA leaves the nucleus through pores in nuclear membrane –> passes to ribosomes (cytoplasm) –> where genetic info is read and used.

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8
Q

what do many genes in eukaryotes have within their boundaries & what are these?

A

non-coding DNA sequences - Introns : non - coding regions of an RNA transcript (= RNA complementary copy of a gene - after transcription) or the DNA encoding it, that are eliminated by splicing before translation.

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9
Q

what are exons?

A

the part of a gene that codes for amino acids (genetic information)

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10
Q

why does a gene consisting of exons and introns have to go through post transcriptional modification?

A

when a gene that consists of exons and introns is transcribed into mRNA (mRNA formed) –> it will contain a sequence of introns & exons exactly as they occur in DNA –> would cause problems when being transcribed & read in ribosomes (protein synthesis) –> as it is unmodified.

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11
Q

what is post-transcriptional modification?

A

a enzyme-catalysed reaction in which the introns (non-coding) are removed as soon as the mRNA strand is formed. = part of RNA chain that is not meant to be translated into proteins

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12
Q

what is RNA splicing?

A

a process that removes introns (non-coding) from pre-mRNA and joins exons together to enable translation.
(resulting in shortened mRNA lengths = mature –> passes to cytoplasm –> involved in protein synthesis in ribosomes)

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13
Q

what do genes of prokaryotes not have?

A

do not have introns –> can’t undergo splicing due to absence of enzymes required.

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14
Q

what do all cells in an organism have in relation to genome?

A

they all have the same genome –> expression of genes is related to when & where the proteins they code for are needed.

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15
Q

example of genes that are expressed all the time

A

genes that are responsible for routines & metabolic functions –> seen in respiration.

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16
Q

example of genes that are expressed at a selected stage in a cell / tissue development

A

seen in cells from stem cells that develop to muscle fibres / neurons.

17
Q

example of genes that are only expressed in mature cells

A

seen in genes responsible for antibody production in mature plasma cell.

18
Q

example of genes that are expressed in receipt of an internal/external signal.

A

seen when a particular hormone/metabolic signal or nerve impulse is received by cell (activated gene)
–> gene for insulin production in B cells in islets

19
Q

what is a chromatin?

A

chromatin consists of complexes of histones and DNA , which coils up to make a chromosome inside the nucleus.

20
Q

what are chromatids & where are they found?

A
  • two strands of replicated chromosome.

- found in a chromatin which has two sister chromatids.

21
Q

what are histones?

A

proteins that aid in condensing the DNA in the nucleus into chromatin.

22
Q

how is DNA structured within a chromatin?

A

In a chromatin –> DNA double helix is wrapped around histones –> forming histone protein beads / nucleosomes (stable protein-DNA complexes)

23
Q

what role does acetylation play in histone tails?

A

histone tails can be chemically modified by enzymes by acetylation –> addition or removal of an acetyl group.

24
Q

what is histone acetylation?

A

first step in the initiation of transcription of a gene = the addition of an acetyl group to a particular amino acid (lysine) at the end of histone tails –> loosens the tight binding of nucleosomes.

25
Q

what are nucleosomes?

A

subunit of chomatins –> each is composed of two turns of DNA wrapped around a set of eight histones (histone octamer)

26
Q

what occurs after loosening between nucleosomes has taken place (due to histone acetylation)?

A

where loosening has occured –> transcription enzymes & other proteins have access –> it can take place (not possible when nucleosomes are tightly bound)

27
Q

what do eukaryotes bind to before mRNA transcription?

A

before mRNA is translated by RNA polymerase –> it binds with general transcription factors (=proteins) at the promoter (sequence of bases).
= transcription complex of proteins (RNA polymerase + general transcription factors) –> when this is formed –> transcription of template (non-coding) strand of gene can occur.

28
Q

what are promoter regions?

A

region where the mRNA will bind to general transcription factors (before the start of a gene’s sequence of bases)
- an example of a length of non-coding DNA with a specific function.

29
Q

how can the rate of transcription be increased/decreased & how does this occur?

A
  • by the binding of specific translation factors on the enhancer site for the gene.
  • when the activator proteins bind to enhancer site –> a new complex is formed & makes contact with polymerase-transition factor complex –> rate of gene expression increases.
30
Q

what is methylation?

A

the addition of a methyl group (-CH3) within the chromatin, which occurs whilst the DNA is wrapped around histones. (enzyme catalysed reaction to the base cytosine).