5.9 - Emerging Treatments Flashcards

1
Q

What are inborn errors of metabolism?

A
  • largest group of genetic diseases
  • affects various pathways including carbohydrate, fatty acid and protein metabolism
  • generally caused by lack of enzyme in that pathway - means no product is formed which are vital for health
  • also causes increase in substrate concentration which can cause disease symptoms
  • also the substrate could be pushed to make an alternate product which can result in disease phenotype
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2
Q

What are some examples of inborn errors of metabolism?

A
  • PKU - phenylketonuria
  • MCAD deficiency
  • Maple Syrup Urine Disease
  • homocystinuria
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3
Q

What is PKU?

A
  • phenylketonuria
  • lack of phenylalanine hydroxylase which converts phenylalanine to tyrosine = less tyrosine, more phenylalanine
  • this pushes phenylalanine down an alternate path to produce phenylketones which are toxic and cause disease symptoms
  • untreated PKU symptoms include major cognitive impairment, behavioural difficulties, fairer skin/hair/eyes than siblings (due to lack of melanin) and recurrent vomiting
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4
Q

How is PKU treated?

A
  • with a low protein diet and tyrosine supplements
  • 1934 - PKU identified but thought to be untreatable
  • 1953 - lack of PAH identified as cause & role of dietary phenylalanine in disease found
  • 1954 - low protein diet therapy introduced, to be effective needs to start before symptoms (as some are irreversible)
  • 1960s - PKU screening introduced
  • 1984 - PAH mutation identified
  • before treatment, need to identify the cause (mutation in PAH) but not necessarily the gene involved
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5
Q

What is haemophilia?

A
  • blood clotting disorder, known since ancient times
  • uncontrolled bleeding
  • bleeding into joints - causes excruciating pain
  • bleeding into brain
  • internal bleeding
  • fatal if untreated
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6
Q

How is haemophilia treated?

A
  • 1930s - diluted snake venom (contains clotting factors) used topically
  • 1940s - whole blood transfusions (very large volumes required = painful)
  • 1952 - factor VIII discovered
  • 1955 - first infusions of factor VIII in plasma form (large volumes required)
  • 1964 - cryoprecipitate discovered
  • 1968 - first FVIII concentrate available
  • 1970s - freeze-dried plasma-derived factor concentrates available
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7
Q

What was the haemophilia treatment blood scandal?

A
  • in 70s&80s, between 5k and 30k were given clotting factors contaminated with HIV and hepatitis, and so far 2500 have died from this
  • there is evidence this contamination was known about at the time
  • how was this solved?
  • 80s - methods of heat treating to kill virus, FVIII gene cloned
  • 90s - recombinant FVIII treatment, gets around the issue of blood donated FVIII
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8
Q

What other diseases are treated by replacement?

A
  • growth hormone deficiency - injection of growth hormone which is now recombinant (originally was cadaver-derived and caused patients to develop CJD)
  • lysosomal storage disease which affects lysosomal breakdown of products in cell e.g:
  • Fabry disease - injection of recombinant alpha galactosidase A
  • Pompe disease - injection of alpha galactosidase
  • these treatments are not mutation specific so can be given to any patient with the condition
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9
Q

What are the stages of drug development?

A
  • first stage - discovery/preclinical - testing in cells, longest part is lab-based
  • then testing in animals
  • moves on to clinical phase - 3 phases:
  • phase I - check safety in healthy volunteers (<100)
  • phase II - check therapeutic effect in few patients (100-300)
  • phase III - large scale therapeutic trials (200-3000)
  • approval by EMA (Europe) / FDA (America) needed
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10
Q

How is drug approval for NHS done?

A
  • by NICE in England & Wales
  • by Healthcare Improvement Scotland in Scotland
  • they also give guidelines for treating conditions
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11
Q

What do pharmacological therapies targeting the protein do?

A
  • treat the condition not the symptoms
  • these are treatments not cures
  • try to normalise function of mutant protein
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12
Q

What are pharmacological chaperones?

A
  • protein folding in cells is complex and sometimes fails
  • chaperones aid in folding process
  • system in ER degrades misfolded proteins
  • misfolded proteins are subject to degradation by various pathways
  • some mutations prevent proteins folding properly
  • if correctly folded, protein is active and moved down secretory pathway –> cytoplasm / out of cell
  • quality control system, ensures only correctly folded proteins end up in target
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13
Q

What is Fabry disease?

A
  • deficiency of alpha-galactosidase A and subsequent build up of globotriaosylceramide (glycosphingolipid)
  • some mutations that cause Fabry are ones that cause protein misfolds
  • treatment is with a small molecule chaperone Migalastat - similar to beta-D-galactose which is the substrate for alpha-galactosidase A
  • stabilises enzyme in correct shape
  • Migalastat binds to the misfolded protein and rescues the folding process = not degraded = protein can travel through ER and increases activity of enzymes in lysosome
  • NICE approved in Feb 2017
  • mutation specific - only treats those where cause of disease is a mutation causing misfolding
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14
Q

What are pharmacological modulators?

A
  • commonly used drugs
  • can be receptor agonists/antagonists
  • can be ion channel activators/blockers
  • can be enzyme activators/inhibitors
  • can design one that has these effects on mutant receptor/channel e.g. Bcl-abl Kinase inhibitors for treatment of cancers caused by Philadelphia chromosome
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15
Q

How have pharmacological modulators been used to treat cystic fibrosis?

A
  • CF - defective chloride channel where mutations (33) cause the channel not to open
  • can design a drug which causes activation - Ivacaftor
  • mutation specific - only effective where a mutation prevents channel from opening
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16
Q

How has combination therapy been used to treat cystic fibrosis?

A
  • some cases of CF caused by mutation (f508del) that causes both misfolding and an inactive channel
  • can be treated with combination of a chaperone and activator e.g. Orkambi (Ivacaftor/lumacaftor) - NICE approved in Oct 2019
  • is not a cure but improves lung function - reverses effect of mutation instead of just treating symptoms
17
Q

What are drugs that read through premature stop codons?

A
  • some diseases are caused by a non-sense mutation that introduces a stop codon prematurely in the protein sequence
  • this prevents protein production and ends up with a shorter protein because release factors bind = truncated protein released
  • can use drugs that prevent this e.g. aminoglycoside antibiotics bind to bacterial ribosomes and cause mistranslation
  • drugs based on these read through non-sense mutations and blocks the effect of release factors = allows full length protein with only a minor change to the sequence (sometimes has a point mutation as tRNA may not always be correct) so still mostly active
18
Q

How do drugs that read through premature stop codons treat DMD?

A
  • Duchenne muscular dystrophy caused by premature stop codon = truncated dystrophin
  • Becker muscular dystrophy = missing section
  • if we read through the premature stop codon we get a phenotype more like BMD (milder)
  • Ataluren approved in EU not US, and NICE approved 2016
  • non-sense mutation specific so MD caused by other mutation types cannot be treated by Ataluren
  • not a cure but reduces symptoms and increases life expectancy
19
Q

What is gene therapy?

A
  • for a recessive disease, we replace defective gene
  • for a dominant disease, we delete defective gene
  • very difficult to achieve in practice - achieving specificity, getting therapy to right place, maintaining expression
  • much easier in vitro (in glass - test tube) + ex vivo (out of the living) than in vivo (in living)
20
Q

What is mitochondrially inherited disease therapy?

A
  • only effective therapy is gene therapy
  • requires IVF
  • maternal spindle transfer - take chromosomes from unfertilised egg with mutated mitochondrial DNA and transfer to unfertilised donor egg with removed nucleus which is then fertilised in vitro and develops into an embryo
  • pronuclear transfer - egg with mutated mitochondrial DNA is fertilised in vitro, resulting pronucleus is removed and transferred to a fertilised donor egg with a removed pronucleus, and fused egg develops normally
  • approved for use in UK but controversy - known as ‘three-parent babies’ but inaccurate as genome has 3bil bp vs 16k bp in mitochondrial DNA, so minute in comparison
21
Q

What is gene silencing?

A
  • used for dominant diseases - gain of function, switches off mutant copy of the gene
  • can be used for recessive diseases - downstream effects
  • can be used for non-genetic diseases
  • several potential methods: antisense oligonucleotides, RNAi
22
Q

How are anti-sense oligonucleotides used as treatment?

A
  • can be included in pharmacological agents but targeted against the genes that cause disease rather than proteins
  • short modified nucleic acid complementary to mRNA of target gene
  • they are modified to prevent degradation and allow entry to cell
  • they bind to target and block translation of target mRNA causing it to be degraded, or can alter splicing pattern of mRNA
  • relatively cheap to make
  • ASO = in-vivo therapy gene silencing
23
Q

What are anti-sense oligonucleotides useful to treat?

A
  • useful for diseases caused by gain of function and a number of them are now approved
  • e.g. Inotersen - treats transthyretin-related hereditary amyloidosis (TRHA), caused by mutation in transthyretin (TTH) that prevents it from forming tetramers and causes it to form aggregates instead which damages tissue - progressive and fatal disease
  • Inotersen can bind to both wild type and mutant form of TTH meaning they are degraded and can no longer produce protein and therefore aggregates - slows down progression
  • mutation specific
24
Q

What is RNAi (siRNA)?

A
  • dsRNA complementary to target
  • modification prevents degradation and allows entry to cell
  • activated via Dicer/Risc pathway
  • targeted RNA is cleaved –> gene silenced
  • RNAi = in vivo therapy gene silencing
  • e.g. Lumarisan - treats primary hyperoxaluria type 1 caused by a mutation in AGT = excess glyoxylate builds up = broken down to oxalate –> calcium oxalate = kidney damage
  • not approved but on MHRA-EAMS
25
Q

How can anti-sense oligonucleotides be involved in exon skipping?

A
  • during pre-RNA processing, oligonucleotides cause exons to be skipped by binding to exon acceptor sites so they can be used to skip disease-causing exons
  • they can be used to put reading frame back in sync by blocking exon that causes truncated protein to form
  • useful in limited circumstances e.g. exon being skipped must not be vital for protein function
  • generally only used for large protein as in small proteins, skipping several exons is more likely to produce a non-functional protein
26
Q

How is exon skipping used to treat DMD?

A
  • DMD caused by small deletion that shifts reading frame –> truncated protein - premature stop codon
  • BMD caused by large deletion but reading frame intact
  • exon skipping to convert DMD –> BMD (milder) - prevent incorporation of mutant exon that codes for premature stop codon
  • Eteplirsen - oligonucleotide causes skipping of exon 51 –> production of partially active dystrophin
  • approved for use in USA but controversial
  • not approved in Europe - more data needed
27
Q

How does virus gene therapy work?

A
  • can engineer a virus’ DNA to carry a therapeutic gene
  • wide variety of viruses used e.g. AAV, adenovirus, lentivirus (e.g. HIV), vaccinia
  • virus choice depends on target tissue - viral tropism (each virus infects particular kind of cells)
  • amount of DNA limited depends on virus - each virus has different amount of DNA
  • making use of ability to take over host cell machinery
28
Q

What is SCID?

A
  • severe combined immuno-deficiency
  • bubble baby disease
  • lack both B-cell and T-cell mediated response
  • several forms: X-linked (X-SCID 70%), adenosine deaminase deficiency (ADA-SCID 15%)
  • can be treated with bone marrow transplant - not possible for all children (80% ADA-SCID = no match), and has its own risks
29
Q

What is in-vitro gene therapy for ADA-SCID?

A
  • Strimvelis - similar to autologous transplant - transplanting back patient’s own bone marrow cells
  • take bone marrow from patient, isolate haemopoietic stem cells, isolate and expand CD34+ cells
  • transfect them with a lentivirus that encodes ADA and grow transformed cells
  • treat patient with busulfan to kill their own HSCs, then reinfuse transformed cells into patient to replace faulty HSCs with healthy ones
30
Q

How does supplementation (in vivo therapy) work?

A
  • where you lack a copy of a functional gene (recessive diseases) and can use a virus to carry in a working copy
  • can inject systemically but most successful in vivo therapies have been local injections in eye, spine and brain
  • many in vivo treatments in development - only one approved
31
Q

How is supplementation used to treat Leber congenital amaurosis type 2?

A
  • recessive disease caused by mutation RPE65 (retinal pigment epithelium-specific kilodalton 65 which is involved in generation of visual pigment)
  • causes progressive blindness through loss of retinal cells
  • treated through Luxturna rAAV2 expressing RPE65 - recombinant AAV virus contains RPE65
  • injected directly into eye behind retina - vector taken up by cells and produces RPE65 proteins = some restoration of visual function
  • not a cure - greatly improves vision but patients need sufficiently remaining cells
  • EMA approved Nov 2018, NICE approved Sep 2019
32
Q

How is supplementation used to treat haemophilia?

A
  • recently licensed gene therapy for haemophilia A in both USA and Europe, not approved for NHS used
  • AAV based therapy - virus injected into liver and factor VIII produced
  • compared to injections: fewer side effects, no weekly injections, better QOL
  • currently on trial in haemophilia B - AAV based
33
Q

How can gene therapies be used in the future?

A
  • number of clinical trials of gene cell therapies in UK increasing annually
  • large number of potential treatments being investigated
  • cures more distant but may be possible
  • use of gene therapy approaches to treat non-genetic disease e.g. COVID vaccine, inclirisan (siRNA to treat high cholesterol - switches off enzyme involved in cholesterol synthesis)
  • patient expectations high - plays role